Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8147378.1

Orthogroup ID

OG0002706

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 384

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8147378.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

attacttattcaaagatatttgacatgcaggccattgattttctggataaactccttcggtatgatcatcaagacaggctaactgcaaaagaagccatgggccatccgtatttctcccaagtgagggcagcagaaagcagcaggatgcggacacaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005956 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0031974 GO:0031981 GO:0032991 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

52

Amino Acids

6.18

Weight (kDa)

8.35

Isoelectric Point (pI)

23.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23070
fragaria_vesca	FvH4_1g17410
malus_domestica	MD02G1183300.v1.1 MD08G1087500.v1.1 MD15G1295000.v1.1
prunus_persica	Prupe.6G222700_v2.0.a1 Prupe.6G222700_v2.0.a1
pyrus_communis	pycom02g14890 pycom02g14900
rosa_chinensis	RchiOBHm_Chr2g0107601 RchiOBHm_Chr4g0423111
rosa_laevigata	RLG00000015367 RLG00000017594 RLG00000019619 RLG00000033266
rosa_multiflora	Rmu_co8147378.1_g000001 Rmu_sc0000800.1_g000031 Rmu_sc0028958.1_g000001
rosa_roxburghii	Rroxscaffold_2G00122390 Rroxscaffold_2G00136160 Rroxscaffold_6G00412260
rosa_rugosa	Rorug01G0255400 Rorug02G0145700 Rorug02G0145800 Rorug02G0145900
rosa_samantha	Rh2AG195200 Rh2BG207800 Rh2CG200400 Rh2CG269000 Rh2DG202800 Rh4AG035300 Rh4AG243500 Rh4BG128100 Rh4BG248200 Rh4CG032800 Rh5CG247100 Rh6AG034200 Rh7AG164100
rosa_wichuraiana	Rw2G015470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	148
AfiI	CCNNNNNNNGG	2 cut(s)	123, 124
AgsI	TTSAA	1 cut(s)	12
AoxI	GGCC	2 cut(s)	30, 100
ApeKI	GCWGC	2 cut(s)	128, 138
AspS9I	GGNCC	1 cut(s)	100
BbvI	GCAGC	2 cut(s)	140, 150
BccI	CCATC	1 cut(s)	111
BclI	TGATCA	1 cut(s)	64
BisI	GCNGC	2 cut(s)	129, 139
BlsI	GCNGC	2 cut(s)	130, 140
BmgT120I	GGNCC	1 cut(s)	100
BmsI	GCATC	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 124
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	2 cut(s)	103, 150
BseLI	CCNNNNNNNGG	2 cut(s)	123, 124
BseXI	GCAGC	2 cut(s)	140, 150
BshFI	GGCC	2 cut(s)	32, 102
BslI	CCNNNNNNNGG	2 cut(s)	123, 124
BsnI	GGCC	2 cut(s)	32, 102
Bsp143I	GATC	1 cut(s)	64
Bsp19I	CCATGG	1 cut(s)	96
BspACI	CCGC	1 cut(s)	148
BspANI	GGCC	2 cut(s)	32, 102
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	1 cut(s)	64
BssT1I	CCWWGG	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	30
BstDSI	CCRYGG	1 cut(s)	96
BstF5I	GGATG	2 cut(s)	103, 150
BstKTI	GATC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstNSI	RCATGY	1 cut(s)	28
BstV1I	GCAGC	2 cut(s)	140, 150
BsuRI	GGCC	2 cut(s)	32, 102
BtgI	CCRYGG	1 cut(s)	96
BtsCI	GGATG	2 cut(s)	103, 150
Cac8I	GCNNGC	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	100
CviAII	CATG	2 cut(s)	25, 97
CviJI	RGCY	4 cut(s)	32, 79, 95, 102
CviKI_1	RGCY	4 cut(s)	32, 79, 95, 102
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	96
EcoT14I	CCWWGG	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	2 cut(s)	28, 100
FaiI	YATR	3 cut(s)	26, 63, 98
FatI	CATG	2 cut(s)	24, 96
FbaI	TGATCA	1 cut(s)	64
Fnu4HI	GCNGC	2 cut(s)	129, 139
FokI	GGATG	1 cut(s)	90
Fsp4HI	GCNGC	2 cut(s)	129, 139
GluI	GCNGC	2 cut(s)	129, 139
HaeIII	GGCC	2 cut(s)	32, 102
Hin1II	CATG	2 cut(s)	28, 100
Hpy188III	TCNNGA	2 cut(s)	44, 71
HpyAV	CCTTC	1 cut(s)	65
HpyCH4V	TGCA	2 cut(s)	28, 86
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
Hsp92II	CATG	2 cut(s)	28, 100
Ksp22I	TGATCA	1 cut(s)	64
Kzo9I	GATC	1 cut(s)	64
LpnPI	CCDG	4 cut(s)	14, 29, 61, 127
Lsp1109I	GCAGC	2 cut(s)	140, 150
LweI	GCATC	1 cut(s)	135
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MnlI	CCTC	1 cut(s)	117
MwoI	GCNNNNNNNGC	1 cut(s)	92
NcoI	CCATGG	1 cut(s)	96
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	2 cut(s)	28, 100
NspI	RCATGY	1 cut(s)	28
PkrI	GCNGC	2 cut(s)	130, 140
PspPI	GGNCC	1 cut(s)	100
SatI	GCNGC	2 cut(s)	129, 139
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	1 cut(s)	100
SfaNI	GCATC	1 cut(s)	135
SgeI	CNNG	8 cut(s)	37, 41, 56, 83, 88, 109, 131, 154
SsiI	CCGC	1 cut(s)	148
StyI	CCWWGG	1 cut(s)	96
TseI	GCWGC	2 cut(s)	128, 138
TspGWI	ACGGA	1 cut(s)	96
XceI	RCATGY	1 cut(s)	28
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.