Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002706

Physical Location & Seq

Genomic Coordinates Reverse (-)

7591619 .. 7610333

Gene Structure 18715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG035300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAGACATCACCACTTTAACAACAAAAACTACCATAATTGTCTCATCGTCATAGCCATGGTGGAGAATTTCTTGAATGGAGGAGAATTTCTTGGGGAATTCATGAATTTGGAGGAGAATTTCTTCCAGTATTTCCAGGAAGACGAAGAGCACACGACCTTCCCCAAGCTCCCTGTCCCTACTACTTCAACTCCATTTGACGATTTCACCCTTCATCTGAGTCTGTATTTGATGGAGTTGGTGATAAGGTTGTGGGTGTGTTGGTTGAATATAGCTTTGGTTGTTGAATTGGCAGGTGGAGCAGCACAGAGAGACATTGGAGGAGACCACCCAAAATGGGTTCAGGCCTTGGAAGTGGAAAAGTCCATTGAGTCCAATTCCCAAGAGAGTGATGATGTGAAGGAAAAAAAAGCCCGACCCTTCAATTTATCTTGCAGCCGCCAAGAGACTCAGAATATTAGGAAGAGAGTGTGTGGCTGTGGAAGACAGTGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

165

Amino Acids

19.18

Weight (kDa)

5.47

Isoelectric Point (pI)

48.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23070
fragaria_vesca	FvH4_1g17410
malus_domestica	MD02G1183300.v1.1 MD08G1087500.v1.1 MD15G1295000.v1.1
prunus_persica	Prupe.6G222700_v2.0.a1 Prupe.6G222700_v2.0.a1
pyrus_communis	pycom02g14890 pycom02g14900
rosa_chinensis	RchiOBHm_Chr2g0107601 RchiOBHm_Chr4g0423111
rosa_laevigata	RLG00000015367 RLG00000017594 RLG00000019619 RLG00000033266
rosa_multiflora	Rmu_co8147378.1_g000001 Rmu_sc0000800.1_g000031 Rmu_sc0028958.1_g000001
rosa_roxburghii	Rroxscaffold_2G00122390 Rroxscaffold_2G00136160 Rroxscaffold_6G00412260
rosa_rugosa	Rorug01G0255400 Rorug02G0145700 Rorug02G0145800 Rorug02G0145900
rosa_samantha	Rh2AG195200 Rh2BG207800 Rh2CG200400 Rh2CG269000 Rh2DG202800 Rh4AG035300 Rh4AG243500 Rh4BG128100 Rh4BG248200 Rh4CG032800 Rh5CG247100 Rh6AG034200 Rh7AG164100
rosa_wichuraiana	Rw2G015470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	284
Acc36I	ACCTGC	1 cut(s)	284
AciI	CCGC	1 cut(s)	439
AcsI	RAATTY	5 cut(s)	67, 86, 98, 106, 118
AfiI	CCNNNNNNNGG	1 cut(s)	337
AgsI	TTSAA	5 cut(s)	76, 189, 268, 287, 424
AjnI	CCWGG	1 cut(s)	135
AjuI	GAANNNNNNNTTGG	2 cut(s)	260, 292
AluBI	AGCT	2 cut(s)	169, 275
AluI	AGCT	2 cut(s)	169, 275
Alw21I	GWGCWC	1 cut(s)	153
Alw26I	GTCTC	4 cut(s)	47, 306, 318, 440
AoxI	GGCC	1 cut(s)	345
ApeKI	GCWGC	2 cut(s)	302, 435
ApoI	RAATTY	5 cut(s)	67, 86, 98, 106, 118
Asp700I	GAANNNNTTC	1 cut(s)	122
AsuHPI	GGTGA	2 cut(s)	199, 253
BbsI	GAAGAC	2 cut(s)	147, 490
Bbv12I	GWGCWC	1 cut(s)	153
BbvI	GCAGC	2 cut(s)	314, 447
BccI	CCATC	1 cut(s)	226
BciT130I	CCWGG	1 cut(s)	137
BcoDI	GTCTC	4 cut(s)	47, 306, 318, 440
BfuAI	ACCTGC	1 cut(s)	284
BisI	GCNGC	3 cut(s)	303, 436, 439
BlsI	GCNGC	3 cut(s)	304, 437, 440
Bme1390I	CCNGG	1 cut(s)	137
BmrFI	CCNGG	1 cut(s)	137
BpiI	GAAGAC	2 cut(s)	147, 490
BsaI	GGTCTC	1 cut(s)	318
BsaJI	CCNNGG	2 cut(s)	57, 348
BsaXI	ACNNNNNCTCC	2 cut(s)	175, 205
Bsc4I	CCNNNNNNNGG	1 cut(s)	337
Bse1I	ACTGG	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	137
BseDI	CCNNGG	2 cut(s)	57, 348
BseLI	CCNNNNNNNGG	1 cut(s)	337
BseMII	CTCAG	2 cut(s)	209, 464
BseNI	ACTGG	1 cut(s)	127
BseRI	GAGGAG	3 cut(s)	96, 128, 336
BseXI	GCAGC	2 cut(s)	314, 447
BshFI	GGCC	1 cut(s)	347
BsiHKAI	GWGCWC	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	1 cut(s)	337
BsmAI	GTCTC	4 cut(s)	47, 306, 318, 440
BsmFI	GGGAC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	347
Bso31I	GGTCTC	1 cut(s)	318
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp19I	CCATGG	1 cut(s)	57
BspACI	CCGC	1 cut(s)	439
BspANI	GGCC	1 cut(s)	347
BspCNI	CTCAG	2 cut(s)	210, 463
BspHI	TCATGA	1 cut(s)	102
BspMI	ACCTGC	1 cut(s)	284
BspQI	GCTCTTC	1 cut(s)	141
BspTNI	GGTCTC	1 cut(s)	318
BsrI	ACTGG	1 cut(s)	127
BssECI	CCNNGG	2 cut(s)	57, 348
BssT1I	CCWWGG	2 cut(s)	57, 348
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	1 cut(s)	489
Bst6I	CTCTTC	2 cut(s)	141, 458
BstDEI	CTNAG	2 cut(s)	218, 450
BstDSI	CCRYGG	1 cut(s)	57
BstMAI	GTCTC	4 cut(s)	47, 306, 318, 440
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstNI	CCWGG	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	135
BstV1I	GCAGC	2 cut(s)	314, 447
BstV2I	GAAGAC	2 cut(s)	147, 490
BsuRI	GGCC	1 cut(s)	347
BtgI	CCRYGG	1 cut(s)	57
BtsIMutI	CAGTG	1 cut(s)	494
BveI	ACCTGC	1 cut(s)	284
CciI	TCATGA	1 cut(s)	102
CviAII	CATG	2 cut(s)	58, 103
CviJI	RGCY	7 cut(s)	56, 169, 275, 347, 413, 438, 477
CviKI_1	RGCY	7 cut(s)	56, 169, 275, 347, 413, 438, 477
DdeI	CTNAG	2 cut(s)	218, 450
Eam1104I	CTCTTC	2 cut(s)	141, 458
EarI	CTCTTC	2 cut(s)	141, 458
Eco130I	CCWWGG	2 cut(s)	57, 348
Eco147I	AGGCCT	1 cut(s)	347
Eco31I	GGTCTC	1 cut(s)	318
EcoRI	GAATTC	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	135
EcoT14I	CCWWGG	2 cut(s)	57, 348
ErhI	CCWWGG	2 cut(s)	57, 348
FaeI	CATG	2 cut(s)	61, 106
FaiI	YATR	5 cut(s)	36, 53, 59, 104, 272
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	2 cut(s)	57, 102
Fnu4HI	GCNGC	3 cut(s)	303, 436, 439
Fsp4HI	GCNGC	3 cut(s)	303, 436, 439
GluI	GCNGC	3 cut(s)	303, 436, 439
HaeIII	GGCC	1 cut(s)	347
Hin1II	CATG	2 cut(s)	61, 106
HinfI	GANTC	3 cut(s)	220, 371, 448
HphI	GGTGA	2 cut(s)	199, 253
Hpy188I	TCNGA	2 cut(s)	219, 453
Hpy188III	TCNNGA	2 cut(s)	73, 103
HpyAV	CCTTC	4 cut(s)	169, 221, 394, 430
HpyCH4III	ACNGT	1 cut(s)	489
HpyCH4V	TGCA	1 cut(s)	435
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	2 cut(s)	218, 450
Hsp92II	CATG	2 cut(s)	61, 106
LguI	GCTCTTC	1 cut(s)	141
LmnI	GCTCC	2 cut(s)	174, 299
LpnPI	CCDG	6 cut(s)	122, 140, 149, 186, 279, 329
Lsp1109I	GCAGC	2 cut(s)	314, 447
MboII	GAAGA	5 cut(s)	115, 152, 158, 475, 495
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	9 cut(s)	37, 67, 86, 98, 106, 118, 287, 376, 424
MlyI	GAGTC	3 cut(s)	229, 380, 442
MnlI	CCTC	3 cut(s)	74, 106, 314
MroXI	GAANNNNTTC	1 cut(s)	122
MseI	TTAA	1 cut(s)	18
MslI	CAYNNNNRTG	1 cut(s)	56
MspR9I	CCNGG	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	137
MwoI	GCNNNNNNNGC	1 cut(s)	299
NcoI	CCATGG	1 cut(s)	57
NlaIII	CATG	2 cut(s)	61, 106
PagI	TCATGA	1 cut(s)	102
PaqCI	CACCTGC	1 cut(s)	284
PceI	AGGCCT	1 cut(s)	347
PciSI	GCTCTTC	1 cut(s)	141
PdmI	GAANNNNTTC	1 cut(s)	122
PfoI	TCCNGGA	1 cut(s)	135
PkrI	GCNGC	3 cut(s)	304, 437, 440
PleI	GAGTC	3 cut(s)	228, 379, 442
PpsI	GAGTC	3 cut(s)	228, 379, 442
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
RseI	CAYNNNNRTG	1 cut(s)	56
SapI	GCTCTTC	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	3 cut(s)	303, 436, 439
SchI	GAGTC	3 cut(s)	229, 380, 442
ScrFI	CCNGG	1 cut(s)	137
SduI	GDGCHC	1 cut(s)	153
SetI	ASST	5 cut(s)	161, 171, 251, 277, 298
SmiMI	CAYNNNNRTG	1 cut(s)	56
Sse9I	AATT	9 cut(s)	37, 67, 86, 98, 106, 118, 287, 376, 424
SseBI	AGGCCT	1 cut(s)	347
SsiI	CCGC	1 cut(s)	439
SspI	AATATT	1 cut(s)	457
StuI	AGGCCT	1 cut(s)	347
StyD4I	CCNGG	1 cut(s)	135
StyI	CCWWGG	2 cut(s)	57, 348
TaaI	ACNGT	1 cut(s)	489
TasI	AATT	9 cut(s)	37, 67, 86, 98, 106, 118, 287, 376, 424
TauI	GCSGC	1 cut(s)	441
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TscAI	CASTG	1 cut(s)	494
TseI	GCWGC	2 cut(s)	302, 435
TspDTI	ATGAA	3 cut(s)	91, 119, 203
TspRI	CASTG	1 cut(s)	494
XapI	RAATTY	5 cut(s)	67, 86, 98, 106, 118
XmnI	GAANNNNTTC	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.