Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002706

Physical Location & Seq

Genomic Coordinates Forward (+)

11556062 .. 11559032

Gene Structure 2971 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g14890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCCATAAGGCCCTCCTTGGAATTCACCGTCTCCTACCACCACAACCTTCTCTCTCTCTTCCTCGCGCGCCGGCACCCTCCGCCGTCTCCTCTCTCCTTCTCCTCCCACCACTTCCACCCTTCCCCGCCGCCTCTAGTCCGCTGCATCGCATCCTCAGCAACTCCTCTCCCTCACCGCCAAACGACCTTTCACCGCCCCCCAAGGCCGCTTCATCCTTATCACGAAACCCTGGCGCAGAAGATCTGTAAATCGATTCGCCGCCCTGGCGCCGCCTCCAAGGCTAGGACTTACGCCGATGTCAACGTCATCCGACCCAAGGACTACTGGGACTACGAGTCCCTCACCGTCCAATGGGGGGAGCAGGATGATTACGAGGTGGTGAAGAAGGTTGGGAGAGGAAAGTACAGTGAAGTGTTTGAAGGGGTTCACTGTACCGATAACGAAAAATGTATTATCAAGATTCTCAAACCTGTTAAAAAAAAGAAGATTAAGAGGGAGATAAAAATATTGCAGAATCTCTGTGGGGGGCCAAATATTGTGAAGTTGCTTGATATTGTCAGAGATCAGCAATCTAAGACCCCTAGTCTTATATTCGAATATGTGAATAATACAGATTTTAAAGTCCTTTATCCGACACTCTCGGACTTTGACATACGATATTACATCTATGAACTTCTCAAGGCTTTGGATTATTGCCACTCACAAGGTATTATGCATCGAGATGTGAAGCCCCATAATGTTATGATTGATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0031974 GO:0031981 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

253

Amino Acids

29.28

Weight (kDa)

9.45

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	125 - 251	7e-31	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	127 - 251	1.5e-13	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23070
fragaria_vesca	FvH4_1g17410
malus_domestica	MD02G1183300.v1.1 MD08G1087500.v1.1 MD15G1295000.v1.1
prunus_persica	Prupe.6G222700_v2.0.a1 Prupe.6G222700_v2.0.a1
pyrus_communis	pycom02g14890 pycom02g14900
rosa_chinensis	RchiOBHm_Chr2g0107601 RchiOBHm_Chr4g0423111
rosa_laevigata	RLG00000015367 RLG00000017594 RLG00000019619 RLG00000033266
rosa_multiflora	Rmu_co8147378.1_g000001 Rmu_sc0000800.1_g000031 Rmu_sc0028958.1_g000001
rosa_roxburghii	Rroxscaffold_2G00122390 Rroxscaffold_2G00136160 Rroxscaffold_6G00412260
rosa_rugosa	Rorug01G0255400 Rorug02G0145700 Rorug02G0145800 Rorug02G0145900
rosa_samantha	Rh2AG195200 Rh2BG207800 Rh2CG200400 Rh2CG269000 Rh2DG202800 Rh4AG035300 Rh4AG243500 Rh4BG128100 Rh4BG248200 Rh4CG032800 Rh5CG247100 Rh6AG034200 Rh7AG164100
rosa_wichuraiana	Rw2G015470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	75, 269
AccII	CGCG	2 cut(s)	68, 70
AciI	CCGC	9 cut(s)	83, 128, 131, 142, 178, 196, 209, 262, 273
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	23
AcyI	GRCGYC	1 cut(s)	270
AfaI	GTAC	2 cut(s)	407, 436
AfiI	CCNNNNNNNGG	4 cut(s)	285, 319, 354, 358
AgsI	TTSAA	1 cut(s)	422
AhdI	GACNNNNNGTC	2 cut(s)	337, 585
AjnI	CCWGG	2 cut(s)	231, 265
AjuI	GAANNNNNNNTTGG	2 cut(s)	174, 206
Alw26I	GTCTC	2 cut(s)	37, 93
AoxI	GGCC	4 cut(s)	3, 11, 206, 530
ApeKI	GCWGC	1 cut(s)	144
ApoI	RAATTY	1 cut(s)	23
Asp700I	GAANNNNTTC	1 cut(s)	426
AspLEI	GCGC	4 cut(s)	70, 72, 238, 272
AspS9I	GGNCC	2 cut(s)	12, 530
AsuHPI	GGTGA	5 cut(s)	19, 167, 185, 337, 394
AsuII	TTCGAA	1 cut(s)	597
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	75, 269
BbvCI	CCTCAGC	1 cut(s)	157
BbvI	GCAGC	1 cut(s)	131
BceAI	ACGGC	1 cut(s)	70
BciT130I	CCWGG	2 cut(s)	233, 267
BcoDI	GTCTC	2 cut(s)	37, 93
BfaI	CTAG	3 cut(s)	137, 285, 585
BfoI	RGCGCY	1 cut(s)	273
BglI	GCCNNNNNGGC	2 cut(s)	267, 281
BglII	AGATCT	1 cut(s)	243
BisI	GCNGC	5 cut(s)	131, 145, 209, 262, 273
BlsI	GCNGC	5 cut(s)	132, 146, 210, 263, 274
Bme1390I	CCNGG	2 cut(s)	233, 267
BmeRI	GACNNNNNGTC	2 cut(s)	337, 585
BmgT120I	GGNCC	2 cut(s)	12, 530
BmiI	GGNNCC	3 cut(s)	77, 271, 531
BmrFI	CCNGG	2 cut(s)	233, 267
BmrI	ACTGGG	1 cut(s)	337
BmsI	GCATC	3 cut(s)	156, 161, 727
BmuI	ACTGGG	1 cut(s)	337
Bpu10I	CCTNAGC	1 cut(s)	157
Bpu14I	TTCGAA	1 cut(s)	597
BpuEI	CTTGAG	1 cut(s)	665
Bsa29I	ATCGAT	2 cut(s)	254, 754
BsaHI	GRCGYC	1 cut(s)	270
BsaJI	CCNNGG	6 cut(s)	18, 203, 231, 265, 279, 318
Bsc4I	CCNNNNNNNGG	4 cut(s)	285, 319, 354, 358
Bse118I	RCCGGY	1 cut(s)	72
Bse1I	ACTGG	1 cut(s)	332
BseBI	CCWGG	2 cut(s)	233, 267
BseCI	ATCGAT	2 cut(s)	254, 754
BseDI	CCNNGG	6 cut(s)	18, 203, 231, 265, 279, 318
BseGI	GGATG	4 cut(s)	152, 214, 309, 373
BseLI	CCNNNNNNNGG	4 cut(s)	285, 319, 354, 358
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	332
BsePI	GCGCGC	1 cut(s)	68
BseRI	GAGGAG	3 cut(s)	81, 94, 156
BseXI	GCAGC	1 cut(s)	131
Bsh1236I	CGCG	2 cut(s)	68, 70
BshFI	GGCC	4 cut(s)	5, 13, 208, 532
BshNI	GGYRCC	2 cut(s)	75, 269
BshVI	ATCGAT	2 cut(s)	254, 754
BsiSI	CCGG	1 cut(s)	73
BslFI	GGGAC	2 cut(s)	325, 344
BslI	CCNNNNNNNGG	4 cut(s)	285, 319, 354, 358
BsmAI	GTCTC	2 cut(s)	37, 93
BsmBI	CGTCTC	2 cut(s)	37, 93
BsmFI	GGGAC	2 cut(s)	325, 344
BsnI	GGCC	4 cut(s)	5, 13, 208, 532
Bsp119I	TTCGAA	1 cut(s)	597
Bsp143I	GATC	3 cut(s)	243, 565, 751
BspACI	CCGC	9 cut(s)	83, 128, 131, 142, 178, 196, 209, 262, 273
BspANI	GGCC	4 cut(s)	5, 13, 208, 532
BspCNI	CTCAG	1 cut(s)	170
BspDI	ATCGAT	2 cut(s)	254, 754
BspFNI	CGCG	2 cut(s)	68, 70
BspLI	GGNNCC	3 cut(s)	77, 271, 531
BspT104I	TTCGAA	1 cut(s)	597
BspT107I	GGYRCC	2 cut(s)	75, 269
BsrFI	RCCGGY	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	332
BssAI	RCCGGY	1 cut(s)	72
BssECI	CCNNGG	6 cut(s)	18, 203, 231, 265, 279, 318
BssHII	GCGCGC	1 cut(s)	68
BssMI	GATC	3 cut(s)	243, 565, 751
BssNI	GRCGYC	1 cut(s)	270
BssT1I	CCWWGG	4 cut(s)	18, 203, 279, 318
Bst2UI	CCWGG	2 cut(s)	233, 267
Bst4CI	ACNGT	4 cut(s)	31, 349, 410, 434
Bst6I	CTCTTC	1 cut(s)	65
BstACI	GRCGYC	1 cut(s)	270
BstBI	TTCGAA	1 cut(s)	597
BstC8I	GCNNGC	2 cut(s)	70, 74
BstDEI	CTNAG	2 cut(s)	157, 576
BstF5I	GGATG	4 cut(s)	152, 214, 309, 373
BstFNI	CGCG	2 cut(s)	68, 70
BstH2I	RGCGCY	1 cut(s)	273
BstHHI	GCGC	4 cut(s)	70, 72, 238, 272
BstKTI	GATC	3 cut(s)	246, 568, 754
BstMAI	GTCTC	2 cut(s)	37, 93
BstMBI	GATC	3 cut(s)	243, 565, 751
BstMWI	GCNNNNNNNGC	4 cut(s)	82, 158, 267, 281
BstNI	CCWGG	2 cut(s)	233, 267
BstSCI	CCNGG	2 cut(s)	231, 265
BstUI	CGCG	2 cut(s)	68, 70
BstV1I	GCAGC	1 cut(s)	131
BstX2I	RGATCY	1 cut(s)	243
BstYI	RGATCY	1 cut(s)	243
Bsu15I	ATCGAT	2 cut(s)	254, 754
BsuRI	GGCC	4 cut(s)	5, 13, 208, 532
BsuTUI	ATCGAT	2 cut(s)	254, 754
BtgZI	GCGATG	1 cut(s)	133
BtsCI	GGATG	4 cut(s)	152, 214, 309, 373
BtsIMutI	CAGTG	2 cut(s)	415, 430
Cac8I	GCNNGC	2 cut(s)	70, 74
CfoI	GCGC	4 cut(s)	70, 72, 238, 272
Cfr10I	RCCGGY	1 cut(s)	72
Cfr13I	GGNCC	2 cut(s)	12, 530
ClaI	ATCGAT	2 cut(s)	254, 754
Csp6I	GTAC	2 cut(s)	406, 435
CviJI	RGCY	7 cut(s)	5, 13, 208, 284, 532, 686, 733
CviKI_1	RGCY	7 cut(s)	5, 13, 208, 284, 532, 686, 733
CviQI	GTAC	2 cut(s)	406, 435
DdeI	CTNAG	2 cut(s)	157, 576
DinI	GGCGCC	1 cut(s)	271
DpnI	GATC	3 cut(s)	245, 567, 753
DpnII	GATC	3 cut(s)	243, 565, 751
DraI	TTTAAA	1 cut(s)	622
DriI	GACNNNNNGTC	2 cut(s)	337, 585
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	65
Eam1105I	GACNNNNNGTC	2 cut(s)	337, 585
EarI	CTCTTC	1 cut(s)	65
EciI	GGCGGA	1 cut(s)	72
Eco130I	CCWWGG	4 cut(s)	18, 203, 279, 318
EcoO109I	RGGNCCY	1 cut(s)	12
EcoRI	GAATTC	1 cut(s)	23
EcoRII	CCWGG	2 cut(s)	231, 265
EcoT14I	CCWWGG	4 cut(s)	18, 203, 279, 318
EcoT22I	ATGCAT	1 cut(s)	720
EgeI	GGCGCC	1 cut(s)	271
EheI	GGCGCC	1 cut(s)	271
ErhI	CCWWGG	4 cut(s)	18, 203, 279, 318
Esp3I	CGTCTC	2 cut(s)	37, 93
FaiI	YATR	8 cut(s)	8, 593, 603, 656, 672, 716, 738, 746
FaqI	GGGAC	2 cut(s)	325, 344
FauI	CCCGC	1 cut(s)	135
Fnu4HI	GCNGC	5 cut(s)	131, 145, 209, 262, 273
FokI	GGATG	4 cut(s)	139, 201, 296, 380
Fsp4HI	GCNGC	5 cut(s)	131, 145, 209, 262, 273
FspBI	CTAG	3 cut(s)	137, 285, 585
GlaI	GCGC	4 cut(s)	69, 71, 237, 271
GluI	GCNGC	5 cut(s)	131, 145, 209, 262, 273
HaeII	RGCGCY	1 cut(s)	273
HaeIII	GGCC	4 cut(s)	5, 13, 208, 532
HapII	CCGG	1 cut(s)	73
HhaI	GCGC	4 cut(s)	70, 72, 238, 272
Hin1I	GRCGYC	1 cut(s)	270
Hin6I	GCGC	4 cut(s)	68, 70, 236, 270
HinP1I	GCGC	4 cut(s)	68, 70, 236, 270
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	4 cut(s)	256, 338, 463, 517
HpaII	CCGG	1 cut(s)	73
HphI	GGTGA	5 cut(s)	19, 167, 185, 337, 394
Hpy166II	GTNNAC	2 cut(s)	304, 430
Hpy188I	TCNGA	4 cut(s)	314, 563, 636, 646
Hpy188III	TCNNGA	3 cut(s)	224, 460, 722
Hpy8I	GTNNAC	2 cut(s)	304, 430
HpyAV	CCTTC	5 cut(s)	59, 109, 132, 382, 416
HpyCH4III	ACNGT	4 cut(s)	31, 349, 410, 434
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	3 cut(s)	147, 514, 718
HpyF10VI	GCNNNNNNNGC	4 cut(s)	82, 158, 267, 281
HpyF3I	CTNAG	2 cut(s)	157, 576
HpySE526I	ACGT	1 cut(s)	306
Hsp92I	GRCGYC	1 cut(s)	270
HspAI	GCGC	4 cut(s)	68, 70, 236, 270
KasI	GGCGCC	1 cut(s)	269
KroI	GCCGGC	1 cut(s)	72
KroNI	GCCGGC	1 cut(s)	74
Kzo9I	GATC	3 cut(s)	243, 565, 751
LmnI	GCTCC	1 cut(s)	361
LpnPI	CCDG	8 cut(s)	86, 218, 245, 252, 279, 313, 350, 486
Lsp1109I	GCAGC	1 cut(s)	131
LweI	GCATC	3 cut(s)	156, 161, 727
MaeI	CTAG	3 cut(s)	137, 285, 585
MaeII	ACGT	1 cut(s)	306
MalI	GATC	3 cut(s)	245, 567, 753
MboI	GATC	3 cut(s)	243, 565, 751
MboII	GAAGA	4 cut(s)	52, 253, 397, 499
MflI	RGATCY	1 cut(s)	243
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	23
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	270
MlyI	GAGTC	1 cut(s)	347
MmeI	TCCRAC	2 cut(s)	337, 659
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	720
MroNI	GCCGGC	1 cut(s)	72
MroXI	GAANNNNTTC	1 cut(s)	426
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	477, 492, 621
MslI	CAYNNNNRTG	1 cut(s)	723
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	144
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	2 cut(s)	233, 267
MvaI	CCWGG	2 cut(s)	233, 267
MvnI	CGCG	2 cut(s)	68, 70
MwoI	GCNNNNNNNGC	4 cut(s)	82, 158, 267, 281
NaeI	GCCGGC	1 cut(s)	74
NarI	GGCGCC	1 cut(s)	270
NdeII	GATC	3 cut(s)	243, 565, 751
NgoMIV	GCCGGC	1 cut(s)	72
NlaIV	GGNNCC	3 cut(s)	77, 271, 531
NsiI	ATGCAT	1 cut(s)	720
NspV	TTCGAA	1 cut(s)	597
PauI	GCGCGC	1 cut(s)	68
PdiI	GCCGGC	1 cut(s)	74
PdmI	GAANNNNTTC	1 cut(s)	426
PfeI	GAWTC	3 cut(s)	256, 463, 517
PkrI	GCNGC	5 cut(s)	132, 146, 210, 263, 274
PleI	GAGTC	1 cut(s)	346
PluTI	GGCGCC	1 cut(s)	273
PpsI	GAGTC	1 cut(s)	346
Psp6I	CCWGG	2 cut(s)	231, 265
PspGI	CCWGG	2 cut(s)	231, 265
PspN4I	GGNNCC	3 cut(s)	77, 271, 531
PspPI	GGNCC	2 cut(s)	12, 530
PsuI	RGATCY	1 cut(s)	243
PteI	GCGCGC	1 cut(s)	68
RsaI	GTAC	2 cut(s)	407, 436
RsaNI	GTAC	2 cut(s)	406, 435
RseI	CAYNNNNRTG	1 cut(s)	723
SaqAI	TTAA	3 cut(s)	477, 492, 621
SatI	GCNGC	5 cut(s)	131, 145, 209, 262, 273
Sau3AI	GATC	3 cut(s)	243, 565, 751
Sau96I	GGNCC	2 cut(s)	12, 530
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	2 cut(s)	233, 267
SetI	ASST	7 cut(s)	51, 191, 309, 381, 393, 475, 712
SfaNI	GCATC	3 cut(s)	156, 161, 727
SfoI	GGCGCC	1 cut(s)	271
SfuI	TTCGAA	1 cut(s)	597
SmiMI	CAYNNNNRTG	1 cut(s)	723
SmlI	CTYRAG	1 cut(s)	680
SmoI	CTYRAG	1 cut(s)	680
Sse9I	AATT	1 cut(s)	23
SsiI	CCGC	9 cut(s)	83, 128, 131, 142, 178, 196, 209, 262, 273
SspDI	GGCGCC	1 cut(s)	269
SspI	AATATT	2 cut(s)	510, 538
SspMI	CTAG	3 cut(s)	137, 285, 585
StyD4I	CCNGG	2 cut(s)	231, 265
StyI	CCWWGG	4 cut(s)	18, 203, 279, 318
TaaI	ACNGT	4 cut(s)	31, 349, 410, 434
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	4 cut(s)	254, 597, 721, 754
TasI	AATT	1 cut(s)	23
TatI	WGTACW	1 cut(s)	405
TauI	GCSGC	4 cut(s)	133, 211, 264, 275
TfiI	GAWTC	3 cut(s)	256, 463, 517
Tru1I	TTAA	3 cut(s)	477, 492, 621
Tru9I	TTAA	3 cut(s)	477, 492, 621
TscAI	CASTG	2 cut(s)	415, 437
TseI	GCWGC	1 cut(s)	144
TspDTI	ATGAA	2 cut(s)	203, 687
TspRI	CASTG	2 cut(s)	415, 437
XapI	RAATTY	1 cut(s)	23
XmnI	GAANNNNTTC	1 cut(s)	426
XspI	CTAG	3 cut(s)	137, 285, 585
Zsp2I	ATGCAT	1 cut(s)	720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.