Rh6AG034200
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002706
Physical Location & Seq
Reverse (-)
4324668 .. 4333157
8490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG034200.1

Sequence Viewer

Length: 396 bp
ATGGAGTTGGTGATAAGGTTGTGGGTGTGTTGGTTGAATCTAGCTTTGGTTGTTGAATTGGCAGGTGGAGCAGCACAGAGAGACATTGGAGGAGACCACCCAAAATGGGTTCAGGCCTTGGAAGTGGAAAAGTCCATTGAGTCCAATTCCCAAGAGAGTGAGTATTTCAAAGGTTCTGAGCTTCTTGTTGATCTACAAGATTATGACTATTCTTTGGACTTGTGGAGTCTTGGTTGTATGTTTCCTGGAATGATATTTCGTAAGAAGCCATTTTTTTTTGGACGTGATAACTATGATCAGCTAGTGAAAATAGCAAAGAGTTGGCAAAGAACCCAACATACTATTGCATCCAAACTAGAGAAGAAAAGCAGCAAGAAGTTTACAGATAGTGCATAA

Protein Analysis

131

Amino Acids

15.1

Weight (kDa)

6.11

Isoelectric Point (pI)

37.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 48 - 127 9.6e-07 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 53
Acc36I ACCTGC 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 3 cut(s) 37, 56, 169
AjiI CACGTC 1 cut(s) 284
AjnI CCWGG 1 cut(s) 244
AjuI GAANNNNNNNTTGG 2 cut(s) 29, 61
AluBI AGCT 3 cut(s) 44, 181, 301
AluI AGCT 3 cut(s) 44, 181, 301
Alw26I GTCTC 2 cut(s) 75, 87
AoxI GGCC 1 cut(s) 114
ApeKI GCWGC 2 cut(s) 71, 369
AsuHPI GGTGA 1 cut(s) 22
BbvI GCAGC 2 cut(s) 83, 381
BciT130I CCWGG 1 cut(s) 246
BclI TGATCA 1 cut(s) 295
BcoDI GTCTC 2 cut(s) 75, 87
BfaI CTAG 3 cut(s) 41, 302, 356
BfuAI ACCTGC 1 cut(s) 53
BisI GCNGC 2 cut(s) 72, 370
BlsI GCNGC 2 cut(s) 73, 371
Bme1390I CCNGG 1 cut(s) 246
BmgBI CACGTC 1 cut(s) 284
BmrFI CCNGG 1 cut(s) 246
BmsI GCATC 1 cut(s) 356
BsaI GGTCTC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 117
BsaXI ACNNNNNCTCC 2 cut(s) 217, 247
Bsc4I CCNNNNNNNGG 1 cut(s) 106
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 117
BseGI GGATG 1 cut(s) 347
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMII CTCAG 1 cut(s) 168
BseRI GAGGAG 1 cut(s) 105
BseXI GCAGC 2 cut(s) 83, 381
BshFI GGCC 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 106
BsmAI GTCTC 2 cut(s) 75, 87
BsnI GGCC 1 cut(s) 116
Bso31I GGTCTC 1 cut(s) 87
Bsp143I GATC 2 cut(s) 190, 295
BspANI GGCC 1 cut(s) 116
BspCNI CTCAG 1 cut(s) 169
BspMI ACCTGC 1 cut(s) 53
BspTNI GGTCTC 1 cut(s) 87
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 2 cut(s) 190, 295
BssT1I CCWWGG 1 cut(s) 117
Bst2UI CCWGG 1 cut(s) 246
BstDEI CTNAG 1 cut(s) 177
BstF5I GGATG 1 cut(s) 347
BstKTI GATC 2 cut(s) 193, 298
BstMAI GTCTC 2 cut(s) 75, 87
BstMBI GATC 2 cut(s) 190, 295
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNI CCWGG 1 cut(s) 246
BstSCI CCNGG 1 cut(s) 244
BstV1I GCAGC 2 cut(s) 83, 381
BsuRI GGCC 1 cut(s) 116
BtrI CACGTC 1 cut(s) 284
BtsCI GGATG 1 cut(s) 347
BveI ACCTGC 1 cut(s) 53
CviJI RGCY 5 cut(s) 44, 116, 181, 268, 301
CviKI_1 RGCY 5 cut(s) 44, 116, 181, 268, 301
DdeI CTNAG 1 cut(s) 177
DpnI GATC 2 cut(s) 192, 297
DpnII GATC 2 cut(s) 190, 295
Eco130I CCWWGG 1 cut(s) 117
Eco147I AGGCCT 1 cut(s) 116
Eco31I GGTCTC 1 cut(s) 87
EcoRII CCWGG 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaiI YATR 5 cut(s) 204, 239, 294, 339, 394
FbaI TGATCA 1 cut(s) 295
Fnu4HI GCNGC 2 cut(s) 72, 370
FokI GGATG 1 cut(s) 334
Fsp4HI GCNGC 2 cut(s) 72, 370
FspBI CTAG 3 cut(s) 41, 302, 356
GluI GCNGC 2 cut(s) 72, 370
HaeIII GGCC 1 cut(s) 116
HinfI GANTC 3 cut(s) 37, 140, 226
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 1 cut(s) 381
Hpy188I TCNGA 1 cut(s) 178
Hpy8I GTNNAC 1 cut(s) 381
HpyCH4IV ACGT 1 cut(s) 283
HpyCH4V TGCA 2 cut(s) 347, 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 1 cut(s) 177
HpySE526I ACGT 1 cut(s) 283
Ksp22I TGATCA 1 cut(s) 295
Kzo9I GATC 2 cut(s) 190, 295
LmnI GCTCC 1 cut(s) 68
LpnPI CCDG 4 cut(s) 48, 98, 231, 258
Lsp1109I GCAGC 2 cut(s) 83, 381
LweI GCATC 1 cut(s) 356
MaeI CTAG 3 cut(s) 41, 302, 356
MaeII ACGT 1 cut(s) 283
MalI GATC 2 cut(s) 192, 297
MboI GATC 2 cut(s) 190, 295
MboII GAAGA 1 cut(s) 373
MluCI AATT 2 cut(s) 56, 145
MlyI GAGTC 2 cut(s) 149, 235
MnlI CCTC 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 246
MvaI CCWGG 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 68
NdeII GATC 2 cut(s) 190, 295
PaqCI CACCTGC 1 cut(s) 53
PceI AGGCCT 1 cut(s) 116
PfeI GAWTC 1 cut(s) 37
PfoI TCCNGGA 1 cut(s) 244
PkrI GCNGC 2 cut(s) 73, 371
PleI GAGTC 2 cut(s) 148, 234
PpsI GAGTC 2 cut(s) 148, 234
Psp6I CCWGG 1 cut(s) 244
PspGI CCWGG 1 cut(s) 244
PsrI GAACNNNNNNTAC 2 cut(s) 322, 354
SatI GCNGC 2 cut(s) 72, 370
Sau3AI GATC 2 cut(s) 190, 295
SchI GAGTC 2 cut(s) 149, 235
ScrFI CCNGG 1 cut(s) 246
SetI ASST 7 cut(s) 20, 46, 67, 175, 183, 286, 303
SfaNI GCATC 1 cut(s) 356
Sse9I AATT 2 cut(s) 56, 145
SseBI AGGCCT 1 cut(s) 116
SspMI CTAG 3 cut(s) 41, 302, 356
StuI AGGCCT 1 cut(s) 116
StyD4I CCNGG 1 cut(s) 244
StyI CCWWGG 1 cut(s) 117
TaiI ACGT 1 cut(s) 286
TasI AATT 2 cut(s) 56, 145
TfiI GAWTC 1 cut(s) 37
TseI GCWGC 2 cut(s) 71, 369
XspI CTAG 3 cut(s) 41, 302, 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.