Rorug02G0145900
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
12821341 .. 12821644
304 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0145900.1

Sequence Viewer

Length: 216 bp
ATGGTGTCGAGTACTGGTGGGAGAGGTGCTGCTGTGGAAGACGACCAAGGTAGGGTCTGGTTTTGCGGTGGTATTGCTATTGCAGGTTATATAGACAAAAGGGTTGTTGGTATTGGCGACGGAGGCGAGACCTGTGGTGGTGGCGTTGCAGGGGCTGAGCTTGGCGGCATGGCAGGGGCTGCGTTCGTCATGCTTGCTAAGGTTCTCCTAGTTTAG

Protein Analysis

71

Amino Acids

6.87

Weight (kDa)

4.66

Isoelectric Point (pI)

17.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 74
AciI CCGC 2 cut(s) 66, 165
AfaI GTAC 1 cut(s) 13
AfiI CCNNNNNNNGG 1 cut(s) 52
AluBI AGCT 1 cut(s) 160
AluI AGCT 1 cut(s) 160
Alw26I GTCTC 1 cut(s) 122
AlwNI CAGNNNCTG 2 cut(s) 155, 179
ApeKI GCWGC 2 cut(s) 29, 179
BbsI GAAGAC 1 cut(s) 45
BbvI GCAGC 2 cut(s) 16, 166
BcoDI GTCTC 1 cut(s) 122
BfaI CTAG 1 cut(s) 209
BfuAI ACCTGC 1 cut(s) 74
BisI GCNGC 3 cut(s) 30, 166, 180
BlpI GCTNAGC 1 cut(s) 156
BlsI GCNGC 3 cut(s) 31, 167, 181
BmcAI AGTACT 1 cut(s) 13
BpiI GAAGAC 1 cut(s) 45
Bpu10I CCTNAGC 1 cut(s) 198
Bpu1102I GCTNAGC 1 cut(s) 156
BsaI GGTCTC 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 46
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse1I ACTGG 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 46
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMII CTCAG 1 cut(s) 147
BseNI ACTGG 1 cut(s) 19
BseXI GCAGC 2 cut(s) 16, 166
BslI CCNNNNNNNGG 1 cut(s) 52
BsmAI GTCTC 1 cut(s) 122
Bso31I GGTCTC 1 cut(s) 122
Bsp1720I GCTNAGC 1 cut(s) 156
BspACI CCGC 2 cut(s) 66, 165
BspCNI CTCAG 1 cut(s) 148
BspMI ACCTGC 1 cut(s) 74
BspTNI GGTCTC 1 cut(s) 122
BsrI ACTGG 1 cut(s) 19
BssECI CCNNGG 1 cut(s) 46
BssT1I CCWWGG 1 cut(s) 46
BstAPI GCANNNNNTGC 1 cut(s) 179
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 2 cut(s) 156, 198
BstMAI GTCTC 1 cut(s) 122
BstMWI GCNNNNNNNGC 2 cut(s) 123, 179
BstV1I GCAGC 2 cut(s) 16, 166
BstV2I GAAGAC 1 cut(s) 45
BveI ACCTGC 1 cut(s) 74
Cac8I GCNNGC 1 cut(s) 195
CaiI CAGNNNCTG 2 cut(s) 155, 179
Csp6I GTAC 1 cut(s) 12
CviAII CATG 2 cut(s) 169, 190
CviJI RGCY 3 cut(s) 155, 160, 179
CviKI_1 RGCY 3 cut(s) 155, 160, 179
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 2 cut(s) 156, 198
Eco130I CCWWGG 1 cut(s) 46
Eco31I GGTCTC 1 cut(s) 122
EcoT14I CCWWGG 1 cut(s) 46
ErhI CCWWGG 1 cut(s) 46
FaeI CATG 2 cut(s) 172, 193
FaiI YATR 4 cut(s) 90, 92, 170, 191
FatI CATG 2 cut(s) 168, 189
Fnu4HI GCNGC 3 cut(s) 30, 166, 180
Fsp4HI GCNGC 3 cut(s) 30, 166, 180
FspBI CTAG 1 cut(s) 209
GluI GCNGC 3 cut(s) 30, 166, 180
Hin1II CATG 2 cut(s) 172, 193
Hpy99I CGWCG 1 cut(s) 122
HpyCH4V TGCA 2 cut(s) 83, 149
HpyF10VI GCNNNNNNNGC 2 cut(s) 123, 179
HpyF3I CTNAG 2 cut(s) 156, 198
Hsp92II CATG 2 cut(s) 172, 193
LpnPI CCDG 5 cut(s) 43, 69, 135, 145, 159
Lsp1109I GCAGC 2 cut(s) 16, 166
MaeI CTAG 1 cut(s) 209
MboII GAAGA 1 cut(s) 50
MnlI CCTC 2 cut(s) 17, 116
MwoI GCNNNNNNNGC 2 cut(s) 123, 179
NlaIII CATG 2 cut(s) 172, 193
PkrI GCNGC 3 cut(s) 31, 167, 181
PstNI CAGNNNCTG 2 cut(s) 155, 179
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
SatI GCNGC 3 cut(s) 30, 166, 180
ScaI AGTACT 1 cut(s) 13
SetI ASST 6 cut(s) 28, 52, 88, 134, 162, 204
SsiI CCGC 2 cut(s) 66, 165
SspMI CTAG 1 cut(s) 209
StyI CCWWGG 1 cut(s) 46
TaqI TCGA 1 cut(s) 8
TatI WGTACW 1 cut(s) 11
TauI GCSGC 1 cut(s) 168
TseI GCWGC 2 cut(s) 29, 179
TspGWI ACGGA 1 cut(s) 135
XspI CTAG 1 cut(s) 209
ZrmI AGTACT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.