AT2G25870

Uncharacterized protein family UPF0054

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
11030970 .. 11034580
3611 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G25870.1

Sequence Viewer

Length: 1755 bp
ATGCTCTCTCGTGTCTGCCCAACCCTCCGCTATAATCGTATCTGGTCTGCTCATGCGCGTGAAATGCCACGCGCCACCCTCCTTCTCCTCCAACCCAACTTCTTCCACTCTTCCCCCAAAACTGCTCTTGTGAATCGTCTCGATGTTACTTCATCGGAGTTTTCTTCCATGTTCCGTCGGAGCTTCCACGCTTTACGCAGCACCGTAGGAGACTGGAGAAAGCTTCCGAAACCGCCGGGTCAGGTTTTTGCGGAGAGGAGAGAATACAGGAAGATTAGAAGGAGAGCTCCGAAGAAGAAACAGGAATTGGAGCTTAGTGTTAGTATCTGCATCGAAGAACAGCTTCCTGATGATCTCGAGATTCAGAATATTGCAGAAATGCTTCGTCTCAATGTACCTATGGCAATGACATTGGCTTTCAATGGTTTGAAAGATTCAAAGTATAAAACAAGAGAGACTGATATAGAAGATCTTGGTGGGTATGAAACTGTTGAATTATCGGTGATGCTTTGTAATGATGATTTTATTTGTAAACTCAACAAAGAGTGGAGAGGTGAAGATCATGCTACTGATGTGCTTTCCATGTCACAACATGTCCCTGAACTGAAGCTTCCAGTACTTATGATGGGAGATCTCGTCATTTCTGTTGAGACAGCTGCAAGGCAAGCTGCAGAGAGAGGGCATACTCTTCTTGATGAAATACGCATTCTTGTGATTCATGGGTTGCTACATCTACTGGGATTTGATCATGAAATCAGCGACGAGGCTGAGCAAGAAATGGAAGAGGAAGAGGAGTTGTTGCTAAAAAACCTTGGGTGGAAAGGAAAAGGACTCATTCAGAGTGCATATGACATTCAAAAAACAACTACAGTTCAGCCGGAGAAATCAGATGACAGGAAGGAAGGGGATGGCCTAAGATTGTACAAACCAAAGTTCTCCTATATATTCTGTGATATGGATGGTACACTGCTTAACAGTAAAAGTCAGATTTCGGAGGCAAATGCAAAAGCTTTAAAAGAAGCCCTTCTGAGGGGACTTAAAGTAGTCATAGCTACGGGGAAGTCCCGCCCAGGTGCGATCAGAATCTTGAAGACGGCTGATCTAACTGGATCCGATGGCATTATCTCAGAGTCCTCTCCAGGCGTTTTCGTTCAGGGATTACTTGTCTATGGTAGACAAGGGAAAGAAGTGTATCGAGGAAACTTAGACCGAGATGTCTGCAGAGAGACCTGTCTTTATTCTTTGGAGCATCGAATTCCTCTCATTGCATTCAGCCAGGATCGCTGCTTGACATTGTTTGACCACCCTCTTGTCGACTCTCTTCACACAATCTACAATGAGCCAAAGGCCGAAATTATATCATCGGTTGATCAACTGATAGCTGAAGCTGACATTCAGAAAGTGATATTTATGGACACAACCGAGGGAGTCTCATCTGTTATCCGTCCGTATTGGTCAGAAGCTACAGGAGACCGTGCTAATGTTGTTCAAGCTCAATCAGACATGCTAGAAATCGTCCCACCCGGAACCTCCAAAGGGAATGGTGTAAAAATGCTACTCAATCATTTGGGCGTTTCACCGGATGAGATAATGGCGATTGGAGATGGAGAAAATGACATAGAGATGCTGCAACTGGCCTCGTTGGGAGTTGCTCTGAGCAACGGTGCAGAAAAAACAAAGGCGGTGGCTGATGTGATTGGTGTGAGCAACGACCAAGATGGTGTTGCTGATGCCATCTACCGCTACGCATTCTGA

Protein Analysis

584

Amino Acids

65.3

Weight (kDa)

5.39

Isoelectric Point (pI)

39.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YbeY PF02130 161 - 270 4.4e-31 Endoribonuclease YbeY
Hydrolase_3 PF08282 315 - 579 9.1e-54 haloacid dehalogenase-like hydrolase
Hydrolase PF00702 489 - 546 6.6e-06 haloacid dehalogenase-like hydrolase
S6PP PF05116 489 - 558 6.3e-10 Sucrose-6F-phosphate phosphohydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1214
AccI GTMKAC 2 cut(s) 1174, 1314
AccII CGCG 2 cut(s) 58, 72
AciI CCGC 6 cut(s) 28, 233, 251, 1066, 1682, 1741
AclWI GGATC 3 cut(s) 1104, 1117, 1287
AcsI RAATTY 1 cut(s) 1254
AcuI CTGAAG 2 cut(s) 626, 1404
AfaI GTAC 4 cut(s) 396, 618, 923, 964
AfiI CCNNNNNNNGG 3 cut(s) 1029, 1030, 1536
AflIII ACRYGT 1 cut(s) 592
AgsI TTSAA 7 cut(s) 421, 430, 438, 494, 857, 1090, 1490
AjnI CCWGG 3 cut(s) 1069, 1138, 1275
AjuI GAANNNNNNNTTGG 2 cut(s) 290, 322
Alw21I GWGCWC 1 cut(s) 289
Alw26I GTCTC 8 cut(s) 143, 204, 392, 449, 644, 1220, 1435, 1464
AlwI GGATC 3 cut(s) 1104, 1117, 1287
Ama87I CYCGRG 1 cut(s) 356
AoxI GGCC 3 cut(s) 910, 1347, 1635
ApeKI GCWGC 5 cut(s) 198, 656, 668, 1284, 1627
ApoI RAATTY 1 cut(s) 1254
Asp700I GAANNNNTTC 3 cut(s) 342, 381, 1023
AspLEI GCGC 2 cut(s) 58, 74
AsuC2I CCSGG 2 cut(s) 237, 1524
AsuHPI GGTGA 3 cut(s) 514, 566, 1569
AvaI CYCGRG 1 cut(s) 356
BamHI GGATCC 1 cut(s) 1109
BanII GRGCYC 1 cut(s) 289
BauI CACGAG 1 cut(s) 9
BbsI GAAGAC 1 cut(s) 1097
Bbv12I GWGCWC 1 cut(s) 289
BbvI GCAGC 5 cut(s) 210, 643, 655, 1271, 1614
BccI CCATC 7 cut(s) 619, 902, 953, 1109, 1598, 1712, 1742
BceAI ACGGC 1 cut(s) 1110
BcgI CGANNNNNNTGC 2 cut(s) 1200, 1234
BciT130I CCWGG 3 cut(s) 1071, 1140, 1277
BclI TGATCA 2 cut(s) 745, 1369
BcnI CCSGG 2 cut(s) 237, 1524
BcoDI GTCTC 8 cut(s) 143, 204, 392, 449, 644, 1220, 1435, 1464
BfaI CTAG 1 cut(s) 1508
BfmI CTRYAG 4 cut(s) 669, 867, 1219, 1464
BglII AGATCT 2 cut(s) 469, 631
BisI GCNGC 5 cut(s) 199, 657, 669, 1285, 1628
BlpI GCTNAGC 1 cut(s) 768
BlsI GCNGC 5 cut(s) 200, 658, 670, 1286, 1629
BmcAI AGTACT 1 cut(s) 618
Bme1390I CCNGG 5 cut(s) 237, 1071, 1140, 1277, 1524
BmeT110I CYCGRG 1 cut(s) 356
BmiI GGNNCC 2 cut(s) 1111, 1528
BmrFI CCNGG 5 cut(s) 237, 1071, 1140, 1277, 1524
BmrI ACTGGG 1 cut(s) 746
BmsI GCATC 5 cut(s) 339, 495, 1258, 1614, 1720
BmuI ACTGGG 1 cut(s) 746
BpiI GAAGAC 1 cut(s) 1097
BplI GAGNNNNNCTC 2 cut(s) 1415, 1447
BpmI CTGGAG 2 cut(s) 235, 1122
Bpu1102I GCTNAGC 1 cut(s) 768
BpuMI CCSGG 2 cut(s) 237, 1524
BsaBI GATNNNNATC 1 cut(s) 1082
BsaI GGTCTC 2 cut(s) 1220, 1464
BsaJI CCNNGG 3 cut(s) 811, 1069, 1422
BsaWI WCCGGW 1 cut(s) 1579
BsaXI ACNNNNNCTCC 2 cut(s) 621, 651
Bsc4I CCNNNNNNNGG 3 cut(s) 1029, 1030, 1536
Bse1I ACTGG 5 cut(s) 218, 614, 741, 1111, 1638
Bse3DI GCAATG 2 cut(s) 411, 1263
Bse8I GATNNNNATC 1 cut(s) 1082
BseBI CCWGG 3 cut(s) 1071, 1140, 1277
BseDI CCNNGG 3 cut(s) 811, 1069, 1422
BseGI GGATG 3 cut(s) 913, 964, 1588
BseJI GATNNNNATC 1 cut(s) 1082
BseLI CCNNNNNNNGG 3 cut(s) 1029, 1030, 1536
BseMI GCAATG 2 cut(s) 411, 1263
BseMII CTCAG 4 cut(s) 759, 1019, 1140, 1646
BseNI ACTGG 5 cut(s) 218, 614, 741, 1111, 1638
BseRI GAGGAG 3 cut(s) 77, 271, 806
BseXI GCAGC 5 cut(s) 210, 643, 655, 1271, 1614
BsgI GTGCAG 1 cut(s) 1686
Bsh1236I CGCG 2 cut(s) 58, 72
BshFI GGCC 3 cut(s) 912, 1349, 1637
BsiHKAI GWGCWC 1 cut(s) 289
BsiHKCI CYCGRG 1 cut(s) 356
BsiSI CCGG 4 cut(s) 236, 878, 1524, 1580
BslFI GGGAC 4 cut(s) 581, 1047, 1048, 1502
BslI CCNNNNNNNGG 3 cut(s) 1029, 1030, 1536
BsmAI GTCTC 8 cut(s) 143, 204, 392, 449, 644, 1220, 1435, 1464
BsmBI CGTCTC 2 cut(s) 143, 392
BsmFI GGGAC 4 cut(s) 581, 1047, 1048, 1502
BsmI GAATGC 3 cut(s) 705, 1268, 1748
BsnI GGCC 3 cut(s) 912, 1349, 1637
Bso31I GGTCTC 2 cut(s) 1220, 1464
BsoBI CYCGRG 1 cut(s) 356
Bsp1286I GDGCHC 1 cut(s) 289
Bsp1407I TGTACA 1 cut(s) 921
Bsp1720I GCTNAGC 1 cut(s) 768
BspACI CCGC 6 cut(s) 28, 233, 251, 1066, 1682, 1741
BspANI GGCC 3 cut(s) 912, 1349, 1637
BspCNI CTCAG 4 cut(s) 760, 1020, 1139, 1647
BspFNI CGCG 2 cut(s) 58, 72
BspHI TCATGA 1 cut(s) 748
BspLI GGNNCC 2 cut(s) 1111, 1528
BspMAI CTGCAG 2 cut(s) 673, 1223
BspPI GGATC 3 cut(s) 1104, 1117, 1287
BspTNI GGTCTC 2 cut(s) 1220, 1464
BsrDI GCAATG 2 cut(s) 411, 1263
BsrGI TGTACA 1 cut(s) 921
BsrI ACTGG 5 cut(s) 218, 614, 741, 1111, 1638
BssECI CCNNGG 3 cut(s) 811, 1069, 1422
BssSI CACGAG 1 cut(s) 9
BssT1I CCWWGG 1 cut(s) 811
Bst2BI CACGAG 1 cut(s) 9
Bst2UI CCWGG 3 cut(s) 1071, 1140, 1277
Bst4CI ACNGT 6 cut(s) 205, 490, 871, 977, 1475, 1664
Bst6I CTCTTC 5 cut(s) 115, 693, 777, 783, 1326
BstAUI TGTACA 1 cut(s) 921
BstC8I GCNNGC 1 cut(s) 666
BstDEI CTNAG 7 cut(s) 314, 768, 914, 1028, 1126, 1204, 1655
BstF5I GGATG 3 cut(s) 913, 964, 1588
BstFNI CGCG 2 cut(s) 58, 72
BstHHI GCGC 2 cut(s) 58, 74
BstMAI GTCTC 8 cut(s) 143, 204, 392, 449, 644, 1220, 1435, 1464
BstMWI GCNNNNNNNGC 3 cut(s) 64, 665, 1281
BstNI CCWGG 3 cut(s) 1071, 1140, 1277
BstNSI RCATGY 2 cut(s) 596, 1507
BstSCI CCNGG 5 cut(s) 235, 1069, 1138, 1275, 1522
BstSFI CTRYAG 4 cut(s) 669, 867, 1219, 1464
BstUI CGCG 2 cut(s) 58, 72
BstV1I GCAGC 5 cut(s) 210, 643, 655, 1271, 1614
BstV2I GAAGAC 1 cut(s) 1097
BstX2I RGATCY 3 cut(s) 469, 631, 1109
BstYI RGATCY 3 cut(s) 469, 631, 1109
BsuRI GGCC 3 cut(s) 912, 1349, 1637
BtsCI GGATG 3 cut(s) 913, 964, 1588
BtsI GCAGTG 1 cut(s) 965
BtsIMutI CAGTG 1 cut(s) 965
Cac8I GCNNGC 1 cut(s) 666
CciI TCATGA 1 cut(s) 748
CfoI GCGC 2 cut(s) 58, 74
Csp6I GTAC 4 cut(s) 395, 617, 922, 963
CspCI CAANNNNNGTGG 2 cut(s) 1665, 1700
CviAII CATG 8 cut(s) 53, 169, 563, 583, 593, 719, 749, 1504
CviQI GTAC 4 cut(s) 395, 617, 922, 963
DdeI CTNAG 7 cut(s) 314, 768, 914, 1028, 1126, 1204, 1655
DraI TTTAAA 1 cut(s) 1014
DrdI GACNNNNNNGTC 1 cut(s) 1214
DseDI GACNNNNNNGTC 1 cut(s) 1214
Eam1104I CTCTTC 5 cut(s) 115, 693, 777, 783, 1326
EarI CTCTTC 5 cut(s) 115, 693, 777, 783, 1326
Ecl136II GAGCTC 1 cut(s) 287
Eco130I CCWWGG 1 cut(s) 811
Eco24I GRGCYC 1 cut(s) 289
Eco31I GGTCTC 2 cut(s) 1220, 1464
Eco53kI GAGCTC 1 cut(s) 287
Eco57I CTGAAG 2 cut(s) 626, 1404
Eco88I CYCGRG 1 cut(s) 356
EcoICRI GAGCTC 1 cut(s) 287
EcoRI GAATTC 1 cut(s) 1254
EcoRII CCWGG 3 cut(s) 1069, 1138, 1275
EcoT14I CCWWGG 1 cut(s) 811
EcoT38I GRGCYC 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 811
Esp3I CGTCTC 2 cut(s) 143, 392
FaeI CATG 8 cut(s) 56, 172, 566, 586, 596, 722, 752, 1507
FalI AAGNNNNNCTT 4 cut(s) 327, 359, 1008, 1040
FaqI GGGAC 4 cut(s) 581, 1047, 1048, 1502
FatI CATG 8 cut(s) 52, 168, 562, 582, 592, 718, 748, 1503
FauI CCCGC 1 cut(s) 1073
FauNDI CATATG 1 cut(s) 847
FbaI TGATCA 2 cut(s) 745, 1369
FblI GTMKAC 2 cut(s) 1174, 1314
Fnu4HI GCNGC 5 cut(s) 199, 657, 669, 1285, 1628
FokI GGATG 3 cut(s) 920, 971, 1595
FriOI GRGCYC 1 cut(s) 289
Fsp4HI GCNGC 5 cut(s) 199, 657, 669, 1285, 1628
FspBI CTAG 1 cut(s) 1508
GlaI GCGC 2 cut(s) 57, 73
GluI GCNGC 5 cut(s) 199, 657, 669, 1285, 1628
GsuI CTGGAG 2 cut(s) 235, 1122
HaeIII GGCC 3 cut(s) 912, 1349, 1637
HapII CCGG 4 cut(s) 236, 878, 1524, 1580
HhaI GCGC 2 cut(s) 58, 74
Hin1II CATG 8 cut(s) 56, 172, 566, 586, 596, 722, 752, 1507
Hin6I GCGC 2 cut(s) 56, 72
HinP1I GCGC 2 cut(s) 56, 72
HincII GTYRAC 1 cut(s) 1315
HindII GTYRAC 1 cut(s) 1315
HindIII AAGCTT 3 cut(s) 221, 608, 1008
HinfI GANTC 9 cut(s) 133, 361, 434, 715, 831, 1083, 1130, 1316, 1428
HpaII CCGG 4 cut(s) 236, 878, 1524, 1580
HphI GGTGA 3 cut(s) 514, 566, 1569
Hpy166II GTNNAC 4 cut(s) 533, 965, 1175, 1315
Hpy188III TCNNGA 7 cut(s) 140, 347, 356, 358, 692, 749, 1087
Hpy8I GTNNAC 4 cut(s) 533, 965, 1175, 1315
Hpy99I CGWCG 2 cut(s) 180, 764
HpyAV CCTTC 5 cut(s) 92, 273, 892, 896, 1034
HpyCH4III ACNGT 6 cut(s) 205, 490, 871, 977, 1475, 1664
HpyF10VI GCNNNNNNNGC 3 cut(s) 64, 665, 1281
HpyF3I CTNAG 7 cut(s) 314, 768, 914, 1028, 1126, 1204, 1655
Hsp92II CATG 8 cut(s) 56, 172, 566, 586, 596, 722, 752, 1507
HspAI GCGC 2 cut(s) 56, 72
Ksp22I TGATCA 2 cut(s) 745, 1369
LmnI GCTCC 4 cut(s) 180, 292, 310, 1246
Lsp1109I GCAGC 5 cut(s) 210, 643, 655, 1271, 1614
LweI GCATC 5 cut(s) 339, 495, 1258, 1614, 1720
MaeI CTAG 1 cut(s) 1508
MaeIII GTNAC 2 cut(s) 145, 585
MflI RGATCY 3 cut(s) 469, 631, 1109
MhlI GDGCHC 1 cut(s) 289
MluCI AATT 4 cut(s) 305, 494, 1254, 1353
MlyI GAGTC 4 cut(s) 825, 1139, 1310, 1437
MmeI TCCRAC 2 cut(s) 115, 158
MroXI GAANNNNTTC 3 cut(s) 342, 381, 1023
MseI TTAA 3 cut(s) 972, 1013, 1038
MslI CAYNNNNRTG 3 cut(s) 57, 710, 1622
MspA1I CMGCKG 1 cut(s) 656
MspI CCGG 4 cut(s) 236, 878, 1524, 1580
MspR9I CCNGG 5 cut(s) 237, 1071, 1140, 1277, 1524
Mva1269I GAATGC 3 cut(s) 705, 1268, 1748
MvaI CCWGG 3 cut(s) 1071, 1140, 1277
MvnI CGCG 2 cut(s) 58, 72
MwoI GCNNNNNNNGC 3 cut(s) 64, 665, 1281
NciI CCSGG 2 cut(s) 237, 1524
NdeI CATATG 1 cut(s) 847
NlaIII CATG 8 cut(s) 56, 172, 566, 586, 596, 722, 752, 1507
NlaIV GGNNCC 2 cut(s) 1111, 1528
NmuCI GTSAC 1 cut(s) 585
NspI RCATGY 2 cut(s) 596, 1507
PaeR7I CTCGAG 1 cut(s) 356
PagI TCATGA 1 cut(s) 748
PciI ACATGT 1 cut(s) 592
PctI GAATGC 3 cut(s) 705, 1268, 1748
PdmI GAANNNNTTC 3 cut(s) 342, 381, 1023
PfeI GAWTC 5 cut(s) 133, 361, 434, 715, 1083
PkrI GCNGC 5 cut(s) 200, 658, 670, 1286, 1629
PleI GAGTC 4 cut(s) 825, 1138, 1310, 1436
PpsI GAGTC 4 cut(s) 825, 1138, 1310, 1436
PscI ACATGT 1 cut(s) 592
Psp124BI GAGCTC 1 cut(s) 289
Psp6I CCWGG 3 cut(s) 1069, 1138, 1275
PspGI CCWGG 3 cut(s) 1069, 1138, 1275
PspN4I GGNNCC 2 cut(s) 1111, 1528
PstI CTGCAG 2 cut(s) 673, 1223
PsuI RGATCY 3 cut(s) 469, 631, 1109
PvuII CAGCTG 1 cut(s) 656
RsaI GTAC 4 cut(s) 396, 618, 923, 964
RsaNI GTAC 4 cut(s) 395, 617, 922, 963
RseI CAYNNNNRTG 3 cut(s) 57, 710, 1622
SacI GAGCTC 1 cut(s) 289
SalI GTCGAC 1 cut(s) 1313
SaqAI TTAA 3 cut(s) 972, 1013, 1038
SatI GCNGC 5 cut(s) 199, 657, 669, 1285, 1628
ScaI AGTACT 1 cut(s) 618
SchI GAGTC 4 cut(s) 825, 1139, 1310, 1437
ScrFI CCNGG 5 cut(s) 237, 1071, 1140, 1277, 1524
SduI GDGCHC 1 cut(s) 289
SfaNI GCATC 5 cut(s) 339, 495, 1258, 1614, 1720
SfcI CTRYAG 4 cut(s) 669, 867, 1219, 1464
Sfr274I CTCGAG 1 cut(s) 356
SlaI CTCGAG 1 cut(s) 356
SmiMI CAYNNNNRTG 3 cut(s) 57, 710, 1622
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 4 cut(s) 305, 494, 1254, 1353
SsiI CCGC 6 cut(s) 28, 233, 251, 1066, 1682, 1741
SspI AATATT 1 cut(s) 370
SspMI CTAG 1 cut(s) 1508
SstI GAGCTC 1 cut(s) 289
StyD4I CCNGG 5 cut(s) 235, 1069, 1138, 1275, 1522
StyI CCWWGG 1 cut(s) 811
TaaI ACNGT 6 cut(s) 205, 490, 871, 977, 1475, 1664
TaqI TCGA 6 cut(s) 141, 333, 357, 1195, 1252, 1314
TaqII GACCGA 1 cut(s) 1224
TasI AATT 4 cut(s) 305, 494, 1254, 1353
TatI WGTACW 2 cut(s) 616, 921
TfiI GAWTC 5 cut(s) 133, 361, 434, 715, 1083
Tru1I TTAA 3 cut(s) 972, 1013, 1038
Tru9I TTAA 3 cut(s) 972, 1013, 1038
TscAI CASTG 1 cut(s) 972
TseFI GTSAC 1 cut(s) 585
TseI GCWGC 5 cut(s) 198, 656, 668, 1284, 1627
Tsp45I GTSAC 1 cut(s) 585
TspDTI ATGAA 5 cut(s) 141, 498, 707, 711, 765
TspGWI ACGGA 3 cut(s) 164, 1433, 1437
TspRI CASTG 1 cut(s) 972
XapI RAATTY 1 cut(s) 1254
XceI RCATGY 2 cut(s) 596, 1507
XhoI CTCGAG 1 cut(s) 356
XmiI GTMKAC 2 cut(s) 1174, 1314
XmnI GAANNNNTTC 3 cut(s) 342, 381, 1023
XspI CTAG 1 cut(s) 1508
ZrmI AGTACT 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.