Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003247

Physical Location & Seq

Genomic Coordinates Reverse (-)

4241981 .. 4246399

Gene Structure 4419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00161520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGATGGCACCCTTCTCAACAGTAAAACTCAAATCAGTTCAACAACTGCAAAGGCTCTTAAAGAGGTCTCATCAAGGGGTGTGAAAATAGTGATAGCAACTGGAAAAACTCGCTCAGCTGTGATCAACATTTTTAAAATGGTAGACTTAGCAGGAAAAGATGGCATTGTTTCAGAATTTTCTCCTGGGGTTTTCTGCCAGGGATTGCTTGTTTATGGTAAGCAAGGTCGGGAAATCTTTAAAGGGAATTTAGATCCAAATGTCTGCAGAGAGGTGTGCCTTTACTCTTGGGAGAATAGGATACCTCTTATTGCTTACAGTGAGGATCGTTGCTTCACTCTATTTGACCACCCACTAGTTGACTCACTACATACTGTATATCATGAGCCAAAGGGGGAGATCATGCCTTCAGTTGAGCATCTCTTGGCTGCTGGTGACATACAGAAAGTAATCTTCATGGACACTGCCGAAGGAGTCGCAACTACTTTGAGGCCATACTGGTCAGGAGCAATTAGAGATCGTGCAGCAGTTGTTCAAGCTCAGCCGGACATGCTTGAAATTGTCCCTCCGGGGACCTCAAAAGGGAGTGGAGTAAAATTGCTGCTTGATCATTTGGGCATCACTCCAAAGGAGATCATGGCTATAGGCGATGGAGAAAATGACGTTGAGATGCTTGAACTAGCTTCTTTGGGTGTTGCTCTTAGCAATGGTTCAGAGAAAACAAAAGCTGTGGCTAATTTAATTGGTGCCGGTAACGACGAAGATGGTGCAGCTGATGCGATCTACCGGTATGCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0042578 GO:0043167 GO:0043169 GO:0044237 GO:0046872 GO:0050308

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_3 UPF0054

Protein Analysis

266

Amino Acids

28.63

Weight (kDa)

5.2

Isoelectric Point (pI)

19.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_3	PF08282	1 - 261	1.9e-49	haloacid dehalogenase-like hydrolase
S6PP	PF05116	177 - 240	2.6e-09	Sucrose-6F-phosphate phosphohydrolase
Hydrolase	PF00702	186 - 228	1.4e-06	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25870
fragaria_vesca	FvH4_2g35220 FvH4_2g35230
malus_domestica	MD08G1110200.v1.1 MD08G1110300.v1.1
prunus_persica	Prupe.1G444400_v2.0.a1 Prupe.1G444400_v2.0.a1 Prupe.1G444400_v2.0.a1 Prupe.1G444400_v2.0.a1 Prupe.1G444400_v2.0.a1 Prupe.1G444500_v2.0.a1 Prupe.1G444500_v2.0.a1 Prupe.1G444500_v2.0.a1
pyrus_communis	pycom08g09180 pycom15g08410
rosa_chinensis	RchiOBHm_Chr6g0306701 RchiOBHm_Chr6g0306711
rosa_laevigata	RLG00000010771 RLG00000010772
rosa_multiflora	Rmu_sc0005201.1_g000001 Rmu_sc0017725.1_g000001 Rmu_sc0017785.1_g000007 Rmu_sc0017785.1_g000008 Rmu_sc0017786.1_g000007
rosa_roxburghii	Rroxscaffold_7G00161520 Rroxscaffold_7G00161530
rosa_rugosa	Rorug06G0351700 Rorug06G0351700
rosa_samantha	Rh6AG464100 Rh6AG464200 Rh6BG436800 Rh6BG436900 Rh6CG478300 Rh6DG465000 Rh6DG465100
rosa_wichuraiana	Rw6G040430 Rw6G040440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	8, 746
AccI	GTMKAC	1 cut(s)	144
AclWI	GGATC	2 cut(s)	248, 333
AcsI	RAATTY	2 cut(s)	176, 247
AcuI	CTGAAG	1 cut(s)	393
AfiI	CCNNNNNNNGG	1 cut(s)	582
AgeI	ACCGGT	1 cut(s)	786
AgsI	TTSAA	4 cut(s)	42, 536, 557, 677
AhlI	ACTAGT	1 cut(s)	355
AjnI	CCWGG	2 cut(s)	184, 198
AluBI	AGCT	5 cut(s)	119, 539, 683, 728, 773
AluI	AGCT	5 cut(s)	119, 539, 683, 728, 773
Alw26I	GTCTC	1 cut(s)	73
AlwI	GGATC	2 cut(s)	248, 333
AoxI	GGCC	1 cut(s)	491
ApeKI	GCWGC	4 cut(s)	428, 524, 601, 770
ApoI	RAATTY	2 cut(s)	176, 247
AsiGI	ACCGGT	1 cut(s)	786
AspS9I	GGNCC	1 cut(s)	573
AsuC2I	CCSGG	1 cut(s)	570
AsuHPI	GGTGA	1 cut(s)	446
AvaII	GGWCC	1 cut(s)	573
BanI	GGYRCC	2 cut(s)	8, 746
BbvI	GCAGC	4 cut(s)	415, 536, 588, 782
BccI	CCATC	3 cut(s)	155, 644, 758
BcgI	CGANNNNNNTGC	2 cut(s)	749, 783
BciT130I	CCWGG	2 cut(s)	186, 200
BciVI	GTATCC	1 cut(s)	294
BclI	TGATCA	2 cut(s)	123, 607
BcnI	CCSGG	1 cut(s)	570
BcoDI	GTCTC	1 cut(s)	73
BcuI	ACTAGT	1 cut(s)	355
BfaI	CTAG	2 cut(s)	356, 680
BfmI	CTRYAG	2 cut(s)	265, 642
BfuI	GTATCC	1 cut(s)	294
BisI	GCNGC	4 cut(s)	429, 525, 602, 771
BlpI	GCTNAGC	2 cut(s)	115, 540
BlsI	GCNGC	4 cut(s)	430, 526, 603, 772
Bme1390I	CCNGG	3 cut(s)	186, 200, 570
Bme18I	GGWCC	1 cut(s)	573
BmgT120I	GGNCC	1 cut(s)	573
BmiI	GGNNCC	3 cut(s)	10, 574, 748
BmrFI	CCNGG	3 cut(s)	186, 200, 570
BmsI	GCATC	4 cut(s)	427, 627, 660, 766
Bpu1102I	GCTNAGC	2 cut(s)	115, 540
BpuMI	CCSGG	1 cut(s)	570
BsaI	GGTCTC	1 cut(s)	73
BsaJI	CCNNGG	3 cut(s)	185, 199, 569
BsaWI	WCCGGW	1 cut(s)	786
Bsc4I	CCNNNNNNNGG	1 cut(s)	582
Bse118I	RCCGGY	2 cut(s)	749, 786
Bse1I	ACTGG	2 cut(s)	106, 503
Bse3DI	GCAATG	1 cut(s)	712
BseBI	CCWGG	2 cut(s)	186, 200
BseDI	CCNNGG	3 cut(s)	185, 199, 569
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	582
BseMI	GCAATG	1 cut(s)	712
BseMII	CTCAG	2 cut(s)	129, 554
BseNI	ACTGG	2 cut(s)	106, 503
BseXI	GCAGC	4 cut(s)	415, 536, 588, 782
BsgI	GTGCAG	2 cut(s)	543, 789
BshFI	GGCC	1 cut(s)	493
BshNI	GGYRCC	2 cut(s)	8, 746
BshTI	ACCGGT	1 cut(s)	786
BsiSI	CCGG	4 cut(s)	545, 569, 750, 787
BslFI	GGGAC	2 cut(s)	548, 586
BslI	CCNNNNNNNGG	1 cut(s)	582
BsmAI	GTCTC	1 cut(s)	73
BsmFI	GGGAC	2 cut(s)	548, 586
BsnI	GGCC	1 cut(s)	493
Bso31I	GGTCTC	1 cut(s)	73
Bsp143I	GATC	8 cut(s)	123, 253, 325, 399, 517, 607, 633, 780
Bsp1720I	GCTNAGC	2 cut(s)	115, 540
BspANI	GGCC	1 cut(s)	493
BspCNI	CTCAG	2 cut(s)	128, 553
BspHI	TCATGA	1 cut(s)	382
BspLI	GGNNCC	3 cut(s)	10, 574, 748
BspMAI	CTGCAG	1 cut(s)	269
BspPI	GGATC	2 cut(s)	248, 333
BspT107I	GGYRCC	2 cut(s)	8, 746
BspTNI	GGTCTC	1 cut(s)	73
BsrDI	GCAATG	1 cut(s)	712
BsrFI	RCCGGY	2 cut(s)	749, 786
BsrI	ACTGG	2 cut(s)	106, 503
BssAI	RCCGGY	2 cut(s)	749, 786
BssECI	CCNNGG	3 cut(s)	185, 199, 569
BssMI	GATC	8 cut(s)	123, 253, 325, 399, 517, 607, 633, 780
Bst2UI	CCWGG	2 cut(s)	186, 200
Bst4CI	ACNGT	3 cut(s)	23, 320, 376
BstAPI	GCANNNNNTGC	1 cut(s)	776
BstDEI	CTNAG	4 cut(s)	115, 148, 540, 701
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	8 cut(s)	126, 256, 328, 402, 520, 610, 636, 783
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	8 cut(s)	123, 253, 325, 399, 517, 607, 633, 780
BstMWI	GCNNNNNNNGC	2 cut(s)	550, 776
BstNI	CCWGG	2 cut(s)	186, 200
BstNSI	RCATGY	1 cut(s)	553
BstSCI	CCNGG	3 cut(s)	184, 198, 568
BstSFI	CTRYAG	2 cut(s)	265, 642
BstV1I	GCAGC	4 cut(s)	415, 536, 588, 782
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
BsuI	GTATCC	1 cut(s)	294
BsuRI	GGCC	1 cut(s)	493
BtgZI	GCGATG	1 cut(s)	663
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	462
BtsIMutI	CAGTG	2 cut(s)	325, 462
CciI	TCATGA	1 cut(s)	382
Cfr10I	RCCGGY	2 cut(s)	749, 786
Cfr13I	GGNCC	1 cut(s)	573
CspAI	ACCGGT	1 cut(s)	786
CspCI	CAANNNNNGTGG	2 cut(s)	711, 746
CviAII	CATG	5 cut(s)	383, 403, 457, 550, 637
DdeI	CTNAG	4 cut(s)	115, 148, 540, 701
DpnI	GATC	8 cut(s)	125, 255, 327, 401, 519, 609, 635, 782
DpnII	GATC	8 cut(s)	123, 253, 325, 399, 517, 607, 633, 780
DraI	TTTAAA	2 cut(s)	136, 241
Eco31I	GGTCTC	1 cut(s)	73
Eco47I	GGWCC	1 cut(s)	573
Eco57I	CTGAAG	1 cut(s)	393
EcoO109I	RGGNCCY	1 cut(s)	573
EcoRII	CCWGG	2 cut(s)	184, 198
FaeI	CATG	5 cut(s)	386, 406, 460, 553, 640
FaqI	GGGAC	2 cut(s)	548, 586
FatI	CATG	5 cut(s)	382, 402, 456, 549, 636
FbaI	TGATCA	2 cut(s)	123, 607
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	4 cut(s)	429, 525, 602, 771
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	4 cut(s)	429, 525, 602, 771
FspBI	CTAG	2 cut(s)	356, 680
GluI	GCNGC	4 cut(s)	429, 525, 602, 771
HaeIII	GGCC	1 cut(s)	493
HapII	CCGG	4 cut(s)	545, 569, 750, 787
Hin1II	CATG	5 cut(s)	386, 406, 460, 553, 640
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	2 cut(s)	362, 474
HpaII	CCGG	4 cut(s)	545, 569, 750, 787
HphI	GGTGA	1 cut(s)	446
Hpy166II	GTNNAC	2 cut(s)	145, 361
Hpy188I	TCNGA	2 cut(s)	175, 715
Hpy188III	TCNNGA	3 cut(s)	230, 383, 504
Hpy8I	GTNNAC	2 cut(s)	145, 361
Hpy99I	CGWCG	1 cut(s)	761
HpyAV	CCTTC	3 cut(s)	23, 417, 464
HpyCH4III	ACNGT	3 cut(s)	23, 320, 376
HpyCH4IV	ACGT	1 cut(s)	663
HpyCH4V	TGCA	4 cut(s)	50, 267, 524, 770
HpyF10VI	GCNNNNNNNGC	2 cut(s)	550, 776
HpyF3I	CTNAG	4 cut(s)	115, 148, 540, 701
HpySE526I	ACGT	1 cut(s)	663
Hsp92II	CATG	5 cut(s)	386, 406, 460, 553, 640
Ksp22I	TGATCA	2 cut(s)	123, 607
Kzo9I	GATC	8 cut(s)	123, 253, 325, 399, 517, 607, 633, 780
LmnI	GCTCC	1 cut(s)	506
Lsp1109I	GCAGC	4 cut(s)	415, 536, 588, 782
LweI	GCATC	4 cut(s)	427, 627, 660, 766
MaeI	CTAG	2 cut(s)	356, 680
MaeII	ACGT	1 cut(s)	663
MaeIII	GTNAC	2 cut(s)	434, 752
MalI	GATC	8 cut(s)	125, 255, 327, 401, 519, 609, 635, 782
MboI	GATC	8 cut(s)	123, 253, 325, 399, 517, 607, 633, 780
MboII	GAAGA	2 cut(s)	445, 773
MflI	RGATCY	1 cut(s)	253
MluCI	AATT	7 cut(s)	176, 247, 510, 558, 596, 736, 741
MlyI	GAGTC	2 cut(s)	356, 483
MnlI	CCTC	7 cut(s)	58, 265, 315, 316, 483, 576, 586
MseI	TTAA	4 cut(s)	60, 135, 240, 740
MspA1I	CMGCKG	2 cut(s)	119, 773
MspI	CCGG	4 cut(s)	545, 569, 750, 787
MspR9I	CCNGG	3 cut(s)	186, 200, 570
MvaI	CCWGG	2 cut(s)	186, 200
MwoI	GCNNNNNNNGC	2 cut(s)	550, 776
NciI	CCSGG	1 cut(s)	570
NdeII	GATC	8 cut(s)	123, 253, 325, 399, 517, 607, 633, 780
NlaIII	CATG	5 cut(s)	386, 406, 460, 553, 640
NlaIV	GGNNCC	3 cut(s)	10, 574, 748
NmuCI	GTSAC	1 cut(s)	434
NspI	RCATGY	1 cut(s)	553
PagI	TCATGA	1 cut(s)	382
PinAI	ACCGGT	1 cut(s)	786
PkrI	GCNGC	4 cut(s)	430, 526, 603, 772
PleI	GAGTC	2 cut(s)	356, 482
PpsI	GAGTC	2 cut(s)	356, 482
PpuMI	RGGWCCY	1 cut(s)	573
Psp5II	RGGWCCY	1 cut(s)	573
Psp6I	CCWGG	2 cut(s)	184, 198
PspGI	CCWGG	2 cut(s)	184, 198
PspN4I	GGNNCC	3 cut(s)	10, 574, 748
PspPI	GGNCC	1 cut(s)	573
PspPPI	RGGWCCY	1 cut(s)	573
PstI	CTGCAG	1 cut(s)	269
PsuI	RGATCY	1 cut(s)	253
PvuII	CAGCTG	2 cut(s)	119, 773
SaqAI	TTAA	4 cut(s)	60, 135, 240, 740
SatI	GCNGC	4 cut(s)	429, 525, 602, 771
Sau3AI	GATC	8 cut(s)	123, 253, 325, 399, 517, 607, 633, 780
Sau96I	GGNCC	1 cut(s)	573
SchI	GAGTC	2 cut(s)	356, 483
ScrFI	CCNGG	3 cut(s)	186, 200, 570
SfaNI	GCATC	4 cut(s)	427, 627, 660, 766
SfcI	CTRYAG	2 cut(s)	265, 642
SinI	GGWCC	1 cut(s)	573
SpeI	ACTAGT	1 cut(s)	355
Sse9I	AATT	7 cut(s)	176, 247, 510, 558, 596, 736, 741
SspMI	CTAG	2 cut(s)	356, 680
StyD4I	CCNGG	3 cut(s)	184, 198, 568
TaaI	ACNGT	3 cut(s)	23, 320, 376
TaiI	ACGT	1 cut(s)	666
TasI	AATT	7 cut(s)	176, 247, 510, 558, 596, 736, 741
Tru1I	TTAA	4 cut(s)	60, 135, 240, 740
Tru9I	TTAA	4 cut(s)	60, 135, 240, 740
TscAI	CASTG	2 cut(s)	325, 469
TseFI	GTSAC	1 cut(s)	434
TseI	GCWGC	4 cut(s)	428, 524, 601, 770
Tsp45I	GTSAC	1 cut(s)	434
TspDTI	ATGAA	1 cut(s)	445
TspRI	CASTG	2 cut(s)	325, 469
VpaK11BI	GGWCC	1 cut(s)	573
XapI	RAATTY	2 cut(s)	176, 247
XceI	RCATGY	1 cut(s)	553
XmiI	GTMKAC	1 cut(s)	144
XspI	CTAG	2 cut(s)	356, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.