Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0003247

Physical Location & Seq

Genomic Coordinates Reverse (-)

7423380 .. 7430747

Gene Structure 7368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g09180.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGCCCCTGATCTTAAGCTTCCGATGGTTGGGTGACATTGTGATTTCTGTTGAGACAGCGGCAAGGCAAGCAGAGGAAAGAGGCCACACGCTTATTGATGAGATACGTGTTCTCATGATACATGGGTTGTTACATTTACTAGGATTTGATCATGAGATTAGTGAAGAGGCCGAAGTGGAAATGGAGAAGGAGGAGGAGCTTCTTTTAAAGAGTCTTGGGTGGAAGGGGAAAGGATTAATTCAAAGTGCACATGATGCCGAAACCCAAACAAATTCCCATGAGGAAAAACCAGATGACAGGAAGAGAGAAGGCAGCCTGCGATTTTATAAACCAAAGTTCAAATGCATTTTCTGTGATATGGATGGCACCCTTCTCAACAGCAAAAGTCAAATTAGTTTAACAACTGCGAAAGCTCTCAAGGAGGTCTCATCAAGGGGTGTGAGAGTAGTGATAGCCACGGGAAAATCTCGTTCAGCTGTGATGAAAATTTTTAAGGAGGTAGAATTAGCTGGAGAAGATGGCATTGTTTCGGAATTTTCTCCTGGGGTTTTTTTGCAGGGATTGCTTGTTTATGGTAGGCAAGGTCGGGAAATTTTTAGAAAAAACTTAGATACAAGTGTCTGCAGAGAGGCGTGTCTCTACTCTTGGGAGAATAAGGTTCCTCTTATTGCATTCAGCAGGGACCGTTGCTTTTCTCTGTTTGAGCATCCATTACTTGACTCAGTTCATACATTGTATAATGAGCCAAAGGTGGAAATCATGCCTTCAGTTGAGCACCTCTTGGCTGAAGCTGACATACAGAAAGTGCTCTTCATGGAGACCCCTGAGGTAGTGGCTACTACTTTGAGGCCATACTGGTCACAAGCAACTGGAGATCGTGCAACAGCTGTTCAAGCAGTGGAAGGGCACCTTGAAATTGTTCCTGCAGGAACCTCAAAAGGAAGTGGGGTAAACATGCTTCTTGATCATTTAGGAATCACTCCAAATCAGATCATGGCTATTGGTGATGGAGAAAATGATGTCGAGATGCTTGAGCTGGCTTCTTTGGGCGTTGCTCTTAGTAATGGATCAGAGAAGACAAAAGCTGTGGCTAATGTAATTGGTGCAAGCAATGATGAAGATGGTGCGGCTGATGCCATTTACCGGTACGCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0042578 GO:0043167 GO:0043169 GO:0044237 GO:0046872 GO:0050308

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_3 UPF0054

Protein Analysis

386

Amino Acids

42.56

Weight (kDa)

5.13

Isoelectric Point (pI)

31.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25870
fragaria_vesca	FvH4_2g35220 FvH4_2g35230
malus_domestica	MD08G1110200.v1.1 MD08G1110300.v1.1
prunus_persica	Prupe.1G444400_v2.0.a1 Prupe.1G444400_v2.0.a1 Prupe.1G444400_v2.0.a1 Prupe.1G444400_v2.0.a1 Prupe.1G444400_v2.0.a1 Prupe.1G444500_v2.0.a1 Prupe.1G444500_v2.0.a1 Prupe.1G444500_v2.0.a1
pyrus_communis	pycom08g09180 pycom15g08410
rosa_chinensis	RchiOBHm_Chr6g0306701 RchiOBHm_Chr6g0306711
rosa_laevigata	RLG00000010771 RLG00000010772
rosa_multiflora	Rmu_sc0005201.1_g000001 Rmu_sc0017725.1_g000001 Rmu_sc0017785.1_g000007 Rmu_sc0017785.1_g000008 Rmu_sc0017786.1_g000007
rosa_roxburghii	Rroxscaffold_7G00161520 Rroxscaffold_7G00161530
rosa_rugosa	Rorug06G0351700 Rorug06G0351700
rosa_samantha	Rh6AG464100 Rh6AG464200 Rh6BG436800 Rh6BG436900 Rh6CG478300 Rh6DG465000 Rh6DG465100
rosa_wichuraiana	Rw6G040430 Rw6G040440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	327
AccB1I	GGYRCC	2 cut(s)	365, 906
AciI	CCGC	2 cut(s)	59, 1127
AclWI	GGATC	1 cut(s)	1075
AcsI	RAATTY	4 cut(s)	271, 486, 533, 591
AcuI	CTGAAG	2 cut(s)	750, 807
AfaI	GTAC	1 cut(s)	1148
AfiI	CCNNNNNNNGG	2 cut(s)	28, 1143
AflII	CTTAAG	1 cut(s)	13
AflIII	ACRYGT	1 cut(s)	106
AgeI	ACCGGT	1 cut(s)	1143
AgsI	TTSAA	4 cut(s)	242, 340, 893, 914
AjnI	CCWGG	1 cut(s)	541
AluBI	AGCT	9 cut(s)	18, 199, 413, 476, 509, 791, 887, 1036, 1085
AluI	AGCT	9 cut(s)	18, 199, 413, 476, 509, 791, 887, 1036, 1085
Alw21I	GWGCWC	3 cut(s)	250, 777, 810
Alw26I	GTCTC	4 cut(s)	47, 430, 641, 812
Alw44I	GTGCAC	1 cut(s)	246
AlwI	GGATC	1 cut(s)	1075
AoxI	GGCC	3 cut(s)	82, 168, 848
ApaLI	GTGCAC	1 cut(s)	246
ApeKI	GCWGC	1 cut(s)	312
ApoI	RAATTY	4 cut(s)	271, 486, 533, 591
AseI	ATTAAT	1 cut(s)	236
AsiGI	ACCGGT	1 cut(s)	1143
Asp700I	GAANNNNTTC	1 cut(s)	918
AspS9I	GGNCC	1 cut(s)	682
AsuHPI	GGTGA	2 cut(s)	44, 1016
AvaII	GGWCC	1 cut(s)	682
AxyI	CCTNAGG	1 cut(s)	825
BaeGI	GKGCMC	2 cut(s)	250, 909
BaeI	ACNNNNGTAYC	4 cut(s)	110, 143, 603, 636
BanI	GGYRCC	2 cut(s)	365, 906
BarI	GAAGNNNNNNTAC	4 cut(s)	780, 812, 942, 974
BbsI	GAAGAC	1 cut(s)	1082
Bbv12I	GWGCWC	3 cut(s)	250, 777, 810
BbvI	GCAGC	1 cut(s)	324
BccI	CCATC	5 cut(s)	18, 356, 512, 1001, 1115
BciT130I	CCWGG	1 cut(s)	543
BclI	TGATCA	2 cut(s)	148, 964
BcoDI	GTCTC	4 cut(s)	47, 430, 641, 812
BfaI	CTAG	1 cut(s)	140
BfmI	CTRYAG	2 cut(s)	622, 924
BfrI	CTTAAG	1 cut(s)	13
BisI	GCNGC	3 cut(s)	60, 313, 1128
BlsI	GCNGC	3 cut(s)	61, 314, 1129
Bme1390I	CCNGG	1 cut(s)	543
Bme18I	GGWCC	1 cut(s)	682
BmgT120I	GGNCC	1 cut(s)	682
BmiI	GGNNCC	5 cut(s)	367, 660, 683, 908, 931
BmrFI	CCNGG	1 cut(s)	543
BmsI	GCATC	4 cut(s)	244, 715, 1017, 1123
BpiI	GAAGAC	1 cut(s)	1082
BpmI	CTGGAG	2 cut(s)	531, 891
BpuEI	CTTGAG	2 cut(s)	401, 1052
BsaAI	YACGTR	1 cut(s)	107
BsaI	GGTCTC	2 cut(s)	430, 812
BsaJI	CCNNGG	2 cut(s)	456, 542
BsaWI	WCCGGW	1 cut(s)	1143
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 1143
Bse118I	RCCGGY	1 cut(s)	1143
Bse1I	ACTGG	2 cut(s)	860, 874
Bse21I	CCTNAGG	1 cut(s)	825
Bse3DI	GCAATG	1 cut(s)	1117
BseBI	CCWGG	1 cut(s)	543
BseDI	CCNNGG	2 cut(s)	456, 542
BseGI	GGATG	2 cut(s)	367, 706
BseLI	CCNNNNNNNGG	2 cut(s)	28, 1143
BseMI	GCAATG	1 cut(s)	1117
BseMII	CTCAG	2 cut(s)	735, 816
BseNI	ACTGG	2 cut(s)	860, 874
BseRI	GAGGAG	2 cut(s)	206, 209
BseSI	GKGCMC	2 cut(s)	250, 909
BseXI	GCAGC	1 cut(s)	324
BshFI	GGCC	3 cut(s)	84, 170, 850
BshNI	GGYRCC	2 cut(s)	365, 906
BshTI	ACCGGT	1 cut(s)	1143
BsiHKAI	GWGCWC	3 cut(s)	250, 777, 810
BsiSI	CCGG	1 cut(s)	1144
BslFI	GGGAC	1 cut(s)	695
BslI	CCNNNNNNNGG	2 cut(s)	28, 1143
BsmAI	GTCTC	4 cut(s)	47, 430, 641, 812
BsmFI	GGGAC	1 cut(s)	695
BsmI	GAATGC	1 cut(s)	671
BsnI	GGCC	3 cut(s)	84, 170, 850
Bso31I	GGTCTC	2 cut(s)	430, 812
Bsp1286I	GDGCHC	4 cut(s)	250, 777, 810, 909
Bsp143I	GATC	6 cut(s)	9, 148, 874, 964, 990, 1067
BspACI	CCGC	2 cut(s)	59, 1127
BspANI	GGCC	3 cut(s)	84, 170, 850
BspCNI	CTCAG	2 cut(s)	734, 817
BspHI	TCATGA	2 cut(s)	114, 151
BspLI	GGNNCC	5 cut(s)	367, 660, 683, 908, 931
BspMAI	CTGCAG	2 cut(s)	626, 928
BspPI	GGATC	1 cut(s)	1075
BspQI	GCTCTTC	1 cut(s)	815
BspT107I	GGYRCC	2 cut(s)	365, 906
BspTI	CTTAAG	1 cut(s)	13
BspTNI	GGTCTC	2 cut(s)	430, 812
BsrDI	GCAATG	1 cut(s)	1117
BsrFI	RCCGGY	1 cut(s)	1143
BsrI	ACTGG	2 cut(s)	860, 874
BssAI	RCCGGY	1 cut(s)	1143
BssECI	CCNNGG	2 cut(s)	456, 542
BssMI	GATC	6 cut(s)	9, 148, 874, 964, 990, 1067
Bst2UI	CCWGG	1 cut(s)	543
Bst4CI	ACNGT	1 cut(s)	686
Bst6I	CTCTTC	3 cut(s)	159, 296, 815
BstAFI	CTTAAG	1 cut(s)	13
BstAPI	GCANNNNNTGC	2 cut(s)	254, 562
BstBAI	YACGTR	1 cut(s)	107
BstC8I	GCNNGC	4 cut(s)	69, 317, 1038, 1108
BstDEI	CTNAG	4 cut(s)	607, 721, 825, 1058
BstDSI	CCRYGG	1 cut(s)	456
BstF5I	GGATG	2 cut(s)	367, 706
BstKTI	GATC	6 cut(s)	12, 151, 877, 967, 993, 1070
BstMAI	GTCTC	4 cut(s)	47, 430, 641, 812
BstMBI	GATC	6 cut(s)	9, 148, 874, 964, 990, 1067
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 254, 562, 893, 1133
BstNI	CCWGG	1 cut(s)	543
BstNSI	RCATGY	1 cut(s)	958
BstSCI	CCNGG	1 cut(s)	541
BstSFI	CTRYAG	2 cut(s)	622, 924
BstSLI	GKGCMC	2 cut(s)	250, 909
BstV1I	GCAGC	1 cut(s)	324
BstV2I	GAAGAC	1 cut(s)	1082
Bsu36I	CCTNAGG	1 cut(s)	825
BsuRI	GGCC	3 cut(s)	84, 170, 850
BtgI	CCRYGG	1 cut(s)	456
BtsCI	GGATG	2 cut(s)	367, 706
BtsI	GCAGTG	1 cut(s)	903
BtsIMutI	CAGTG	1 cut(s)	903
Cac8I	GCNNGC	4 cut(s)	69, 317, 1038, 1108
CciI	TCATGA	2 cut(s)	114, 151
Cfr10I	RCCGGY	1 cut(s)	1143
Cfr13I	GGNCC	1 cut(s)	682
Csp6I	GTAC	1 cut(s)	1147
CspAI	ACCGGT	1 cut(s)	1143
CspCI	CAANNNNNGTGG	2 cut(s)	1068, 1103
CviAII	CATG	9 cut(s)	115, 122, 152, 251, 278, 760, 814, 955, 994
CviQI	GTAC	1 cut(s)	1147
DdeI	CTNAG	4 cut(s)	607, 721, 825, 1058
DpnI	GATC	6 cut(s)	11, 150, 876, 966, 992, 1069
DpnII	GATC	6 cut(s)	9, 148, 874, 964, 990, 1067
DraI	TTTAAA	1 cut(s)	207
Eam1104I	CTCTTC	3 cut(s)	159, 296, 815
EarI	CTCTTC	3 cut(s)	159, 296, 815
Eco31I	GGTCTC	2 cut(s)	430, 812
Eco47I	GGWCC	1 cut(s)	682
Eco57I	CTGAAG	2 cut(s)	750, 807
Eco81I	CCTNAGG	1 cut(s)	825
EcoRII	CCWGG	1 cut(s)	541
EcoT22I	ATGCAT	1 cut(s)	347
FaeI	CATG	9 cut(s)	118, 125, 155, 254, 281, 763, 817, 958, 997
FalI	AAGNNNNNCTT	2 cut(s)	894, 926
FaqI	GGGAC	1 cut(s)	695
FatI	CATG	9 cut(s)	114, 121, 151, 250, 277, 759, 813, 954, 993
FbaI	TGATCA	2 cut(s)	148, 964
Fnu4HI	GCNGC	3 cut(s)	60, 313, 1128
FokI	GGATG	2 cut(s)	374, 693
Fsp4HI	GCNGC	3 cut(s)	60, 313, 1128
FspBI	CTAG	1 cut(s)	140
GluI	GCNGC	3 cut(s)	60, 313, 1128
GsuI	CTGGAG	2 cut(s)	531, 891
HaeIII	GGCC	3 cut(s)	84, 170, 850
HapII	CCGG	1 cut(s)	1144
Hin1II	CATG	9 cut(s)	118, 125, 155, 254, 281, 763, 817, 958, 997
HindIII	AAGCTT	1 cut(s)	16
HinfI	GANTC	3 cut(s)	211, 719, 975
HpaII	CCGG	1 cut(s)	1144
HphI	GGTGA	2 cut(s)	44, 1016
Hpy166II	GTNNAC	2 cut(s)	248, 952
Hpy188I	TCNGA	4 cut(s)	23, 532, 990, 1072
Hpy188III	TCNNGA	5 cut(s)	115, 152, 587, 962, 1024
Hpy8I	GTNNAC	2 cut(s)	248, 952
HpyAV	CCTTC	6 cut(s)	181, 217, 302, 380, 774, 896
HpyCH4III	ACNGT	1 cut(s)	686
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	8 cut(s)	248, 345, 556, 624, 671, 881, 926, 1106
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 254, 562, 893, 1133
HpyF3I	CTNAG	4 cut(s)	607, 721, 825, 1058
HpySE526I	ACGT	1 cut(s)	106
Hsp92II	CATG	9 cut(s)	118, 125, 155, 254, 281, 763, 817, 958, 997
Ksp22I	TGATCA	2 cut(s)	148, 964
Kzo9I	GATC	6 cut(s)	9, 148, 874, 964, 990, 1067
LguI	GCTCTTC	1 cut(s)	815
LmnI	GCTCC	1 cut(s)	196
Lsp1109I	GCAGC	1 cut(s)	324
LweI	GCATC	4 cut(s)	244, 715, 1017, 1123
MaeI	CTAG	1 cut(s)	140
MaeII	ACGT	1 cut(s)	106
MaeIII	GTNAC	3 cut(s)	32, 129, 858
MalI	GATC	6 cut(s)	11, 150, 876, 966, 992, 1069
MboI	GATC	6 cut(s)	9, 148, 874, 964, 990, 1067
MboII	GAAGA	6 cut(s)	176, 313, 527, 802, 1087, 1130
MhlI	GDGCHC	4 cut(s)	250, 777, 810, 909
MluCI	AATT	9 cut(s)	237, 271, 390, 486, 503, 533, 591, 915, 1098
MlyI	GAGTC	2 cut(s)	220, 713
Mph1103I	ATGCAT	1 cut(s)	347
MroXI	GAANNNNTTC	1 cut(s)	918
MseI	TTAA	5 cut(s)	14, 206, 236, 398, 492
MspA1I	CMGCKG	3 cut(s)	59, 476, 887
MspCI	CTTAAG	1 cut(s)	13
MspI	CCGG	1 cut(s)	1144
MspR9I	CCNGG	1 cut(s)	543
Mva1269I	GAATGC	1 cut(s)	671
MvaI	CCWGG	1 cut(s)	543
MwoI	GCNNNNNNNGC	5 cut(s)	68, 254, 562, 893, 1133
NdeII	GATC	6 cut(s)	9, 148, 874, 964, 990, 1067
NlaIII	CATG	9 cut(s)	118, 125, 155, 254, 281, 763, 817, 958, 997
NlaIV	GGNNCC	5 cut(s)	367, 660, 683, 908, 931
NmuCI	GTSAC	2 cut(s)	32, 858
NsiI	ATGCAT	1 cut(s)	347
NspI	RCATGY	1 cut(s)	958
PagI	TCATGA	2 cut(s)	114, 151
PciSI	GCTCTTC	1 cut(s)	815
PctI	GAATGC	1 cut(s)	671
PdmI	GAANNNNTTC	1 cut(s)	918
PfeI	GAWTC	1 cut(s)	975
PinAI	ACCGGT	1 cut(s)	1143
PkrI	GCNGC	3 cut(s)	61, 314, 1129
PleI	GAGTC	2 cut(s)	219, 713
PpsI	GAGTC	2 cut(s)	219, 713
Ppu21I	YACGTR	1 cut(s)	107
PshBI	ATTAAT	1 cut(s)	236
PsiI	TTATAA	1 cut(s)	327
Psp6I	CCWGG	1 cut(s)	541
PspGI	CCWGG	1 cut(s)	541
PspN4I	GGNNCC	5 cut(s)	367, 660, 683, 908, 931
PspPI	GGNCC	1 cut(s)	682
PstI	CTGCAG	2 cut(s)	626, 928
PvuII	CAGCTG	2 cut(s)	476, 887
RsaI	GTAC	1 cut(s)	1148
RsaNI	GTAC	1 cut(s)	1147
SapI	GCTCTTC	1 cut(s)	815
SaqAI	TTAA	5 cut(s)	14, 206, 236, 398, 492
SatI	GCNGC	3 cut(s)	60, 313, 1128
Sau3AI	GATC	6 cut(s)	9, 148, 874, 964, 990, 1067
Sau96I	GGNCC	1 cut(s)	682
SbfI	CCTGCAGG	1 cut(s)	928
SchI	GAGTC	2 cut(s)	220, 713
ScrFI	CCNGG	1 cut(s)	543
SdaI	CCTGCAGG	1 cut(s)	928
SduI	GDGCHC	4 cut(s)	250, 777, 810, 909
SfaNI	GCATC	4 cut(s)	244, 715, 1017, 1123
SfcI	CTRYAG	2 cut(s)	622, 924
SinI	GGWCC	1 cut(s)	682
SmlI	CTYRAG	3 cut(s)	13, 416, 1031
SmoI	CTYRAG	3 cut(s)	13, 416, 1031
Sse8387I	CCTGCAGG	1 cut(s)	928
Sse9I	AATT	9 cut(s)	237, 271, 390, 486, 503, 533, 591, 915, 1098
SsiI	CCGC	2 cut(s)	59, 1127
SspMI	CTAG	1 cut(s)	140
StyD4I	CCNGG	1 cut(s)	541
TaaI	ACNGT	1 cut(s)	686
TaiI	ACGT	1 cut(s)	109
TaqI	TCGA	1 cut(s)	1023
TasI	AATT	9 cut(s)	237, 271, 390, 486, 503, 533, 591, 915, 1098
TauI	GCSGC	2 cut(s)	62, 1130
TfiI	GAWTC	1 cut(s)	975
Tru1I	TTAA	5 cut(s)	14, 206, 236, 398, 492
Tru9I	TTAA	5 cut(s)	14, 206, 236, 398, 492
TscAI	CASTG	1 cut(s)	903
TseFI	GTSAC	2 cut(s)	32, 858
TseI	GCWGC	1 cut(s)	312
Tsp45I	GTSAC	2 cut(s)	32, 858
TspDTI	ATGAA	4 cut(s)	497, 716, 802, 1131
TspRI	CASTG	1 cut(s)	903
Vha464I	CTTAAG	1 cut(s)	13
VneI	GTGCAC	1 cut(s)	246
VpaK11BI	GGWCC	1 cut(s)	682
VspI	ATTAAT	1 cut(s)	236
XapI	RAATTY	4 cut(s)	271, 486, 533, 591
XceI	RCATGY	1 cut(s)	958
XmnI	GAANNNNTTC	1 cut(s)	918
XspI	CTAG	1 cut(s)	140
Zsp2I	ATGCAT	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.