Prupe.1G444500_v2.0.a1

Uncharacterized protein family UPF0054

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
37654564 .. 37658896
4333 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G444500.2

Sequence Viewer

Length: 1740 bp
ATGCTCCTCCTCCTCCACCTACCCTCCTCTCCCTCCCCCGCTACTCAAATGGCGCGTTACATTCCACGCACCGCCCTCATGTCCAACTCATCTGCGCCGCACCTTATCTTCCCTCCCGGAACGCACAGTTTCGAGGCCTCAAAATCCCTGGTTTTTGGTCGGAGATTTCATGCGATGTGCGGAGAAAAATTGAGAGGTGCTGCGGGTGCGAGACCATTGCTAAGGGGACGAGCCTTCGCTGCTCAGAGAGACCTCAGAAAGGCGAGGCGGCGAGCCCCAAAGAGCAAGGAGAAGGAGCTGGAGCTCAGTGTCAGTGTTTCTATGGAAGAAGCTTTGCCTGAAAATCCTGAAATCTCGACTATTGCAGAATTGCTTCGTGTAGATGCTCCAGCAGCAATGAAACTGGCGTTTGACGGTCTGAAAGATTCGGTGTATAAAACAAGGGATAATGCGGTCAGCAATGTTGGTGGATATGAAAGCACCGAGCTTTCCGTGCTTCTTTGCAATGACGAATTTATCCGAAAACTTAATAAAGAATGGAGAGGGGAGGACCATGCTACTGATGTTCTTTCCATGTCCCAGCATGTCCCTGATCTTAGGCTTCCCATTCTTATGTTGGGTGACATCGTGATTTCTGTTGAGACAGCTGCAAGACAAGCCGAGCAAAGAGGCCACACGCTCCTTGACGAGATGCGCATTCTCATGGTACATGGTTTGTTACATCTCTTAGGATTTGATCATGAGCTTAGCAAAGATGCTGAAGTGGAAATGGAGAAGGAGGAAGATCTTCTCTTAAAGAGTCTTGGGTGGAAGGGAAAGGGGTTAATTCAGAGTGTATATGATGCTGAAACCCAAACCCTGGGGGACAAACTAGATGACAGTAAGAGAGAAGGCAGCCTTCAATATAATAAGCCAAAGTTCAGATATGTTTTCTGTGATATGGATGGCACCCTTCTCAACAGCAAAAGTCAACTGAGTTCAACAAATGTGAAGGCTCTGAAAGAGGCCTCATCAAGGGGTGTGAAAGTAATGATAGCAACCGGAAAAGCTCGTCCAGCTGTGATGCGCATTTTTAAGGAAGTTGATTTAGCTGGAGAAGATGGCATTGTTTCAGAATTTTCTCCTGGGGTTTTCTTGCAGGGATTGCTTGTTTATGGTAGGCAAGGTCGGGAAATTTTTAGAAGGAATTTGGATGCAAATGTATGCAGAGAGGCATGTCTTTACTCTTTGGAGACTGAGGTTCCTCTTGTTGCATTTACCGAGGATCGTTGTTTAACTCTATTTGATCACCCACTTGTTGATTCCATGCATACTGTATATCACGAGCAAAAGGCGGAGATCATGCCTTCAGTTGAGCATCTCGTGGCTGCTGCTGGAATACAGAAACTAGTCTTCATGGACACTCCTGAGGGAGTGACTACTGCTTTGAGGCCATACTGGTCAGAAGCAACTGGAGATTGTGCCAGAGTTGTTCAAACTGTGCCTGATATGCTTGAAATTGTTCCCCCCGGAACCTCAAAAGGCAGTGGAGTAAACATGCTGCTTGGTCATTTGGGAATCACTCCAAAGGAGATCATGGCTATTGGCGATGGAGAAAATGATATAGAGATGCTTGAGCTGGCTTCTTTAGGCATTGCTCTTAGTAATGGAGCAGAGAAGACAAAAGCTGTGGCTAATGTAGTTGGTCTCAGCAACGACGAAGATGGTGTAGCCGATGCAATCTACCGGTATGCATTGTGA

Protein Analysis

580

Amino Acids

63.64

Weight (kDa)

5.64

Isoelectric Point (pI)

37.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 695, 1067
AccB1I GGYRCC 1 cut(s) 947
AccB7I CCANNNNNTGG 1 cut(s) 859
AccII CGCG 1 cut(s) 55
AciI CCGC 8 cut(s) 39, 72, 98, 180, 203, 268, 452, 1334
AclWI GGATC 1 cut(s) 1272
AcsI RAATTY 4 cut(s) 512, 1115, 1173, 1186
AcuI CTGAAG 2 cut(s) 780, 1332
AfaI GTAC 1 cut(s) 708
AfiI CCNNNNNNNGG 3 cut(s) 259, 859, 1014
AgeI ACCGGT 1 cut(s) 1725
AgsI TTSAA 4 cut(s) 902, 981, 1475, 1496
AhlI ACTAGT 1 cut(s) 1387
AjnI CCWGG 3 cut(s) 147, 858, 1123
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 5 cut(s) 205, 243, 635, 1226, 1691
AlwI GGATC 1 cut(s) 1272
AoxI GGCC 4 cut(s) 135, 670, 1005, 1430
ApeKI GCWGC 8 cut(s) 200, 239, 392, 647, 894, 1367, 1370, 1540
ApoI RAATTY 4 cut(s) 512, 1115, 1173, 1186
ArsI GACNNNNNNTTYG 2 cut(s) 1408, 1440
AsiGI ACCGGT 1 cut(s) 1725
Asp700I GAANNNNTTC 3 cut(s) 372, 786, 1500
AspLEI GCGC 4 cut(s) 55, 97, 696, 1068
AspS9I GGNCC 1 cut(s) 550
AsuC2I CCSGG 2 cut(s) 117, 1509
AsuHPI GGTGA 2 cut(s) 632, 1280
AvaII GGWCC 1 cut(s) 550
AxyI CCTNAGG 1 cut(s) 1407
BanI GGYRCC 1 cut(s) 947
BanII GRGCYC 2 cut(s) 277, 306
BauI CACGAG 2 cut(s) 1322, 1361
BbsI GAAGAC 2 cut(s) 1384, 1664
Bbv12I GWGCWC 1 cut(s) 306
BbvI GCAGC 8 cut(s) 187, 226, 404, 634, 906, 1354, 1357, 1527
BccI CCATC 4 cut(s) 938, 1094, 1583, 1697
BcgI CGANNNNNNTGC 2 cut(s) 199, 233
BciT130I CCWGG 3 cut(s) 149, 860, 1125
BclI TGATCA 2 cut(s) 736, 1285
BcnI CCSGG 2 cut(s) 117, 1509
BcoDI GTCTC 5 cut(s) 205, 243, 635, 1226, 1691
BcuI ACTAGT 1 cut(s) 1387
BfaI CTAG 2 cut(s) 872, 1388
BglII AGATCT 1 cut(s) 784
BlpI GCTNAGC 1 cut(s) 746
Bme1390I CCNGG 5 cut(s) 117, 149, 860, 1125, 1509
Bme18I GGWCC 1 cut(s) 550
BmgT120I GGNCC 1 cut(s) 550
BmiI GGNNCC 3 cut(s) 949, 1242, 1513
BmrFI CCNGG 5 cut(s) 117, 149, 860, 1125, 1509
BmsI GCATC 9 cut(s) 373, 681, 745, 832, 1053, 1183, 1366, 1599, 1705
BpiI GAAGAC 2 cut(s) 1384, 1664
BpmI CTGGAG 4 cut(s) 320, 372, 1113, 1473
Bpu10I CCTNAGC 1 cut(s) 221
Bpu1102I GCTNAGC 1 cut(s) 746
BpuEI CTTGAG 1 cut(s) 1634
BpuMI CCSGG 2 cut(s) 117, 1509
BsaI GGTCTC 3 cut(s) 205, 243, 1691
BsaJI CCNNGG 6 cut(s) 147, 858, 859, 1124, 1260, 1507
BsaWI WCCGGW 2 cut(s) 1040, 1725
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
Bsc4I CCNNNNNNNGG 3 cut(s) 259, 859, 1014
Bse118I RCCGGY 1 cut(s) 1725
Bse1I ACTGG 3 cut(s) 408, 1442, 1456
Bse21I CCTNAGG 1 cut(s) 1407
Bse3DI GCAATG 5 cut(s) 215, 402, 466, 511, 1632
BseBI CCWGG 3 cut(s) 149, 860, 1125
BseDI CCNNGG 6 cut(s) 147, 858, 859, 1124, 1260, 1507
BseGI GGATG 2 cut(s) 949, 1198
BseLI CCNNNNNNNGG 3 cut(s) 259, 859, 1014
BseMI GCAATG 5 cut(s) 215, 402, 466, 511, 1632
BseMII CTCAG 7 cut(s) 257, 268, 319, 965, 1227, 1398, 1702
BseNI ACTGG 3 cut(s) 408, 1442, 1456
BseRI GAGGAG 1 cut(s) 16
BseXI GCAGC 8 cut(s) 187, 226, 404, 634, 906, 1354, 1357, 1527
BseYI CCCAGC 1 cut(s) 579
Bsh1236I CGCG 1 cut(s) 55
BshFI GGCC 4 cut(s) 137, 672, 1007, 1432
BshNI GGYRCC 1 cut(s) 947
BshTI ACCGGT 1 cut(s) 1725
BsiHKAI GWGCWC 1 cut(s) 306
BsiSI CCGG 4 cut(s) 117, 1041, 1509, 1726
BslFI GGGAC 4 cut(s) 240, 562, 572, 878
BslI CCNNNNNNNGG 3 cut(s) 259, 859, 1014
BsmAI GTCTC 5 cut(s) 205, 243, 635, 1226, 1691
BsmFI GGGAC 4 cut(s) 240, 562, 572, 878
BsmI GAATGC 1 cut(s) 696
BsnI GGCC 4 cut(s) 137, 672, 1007, 1432
Bso31I GGTCTC 3 cut(s) 205, 243, 1691
Bsp1286I GDGCHC 2 cut(s) 277, 306
Bsp143I GATC 7 cut(s) 592, 736, 784, 1264, 1285, 1338, 1572
Bsp1720I GCTNAGC 1 cut(s) 746
BspACI CCGC 8 cut(s) 39, 72, 98, 180, 203, 268, 452, 1334
BspANI GGCC 4 cut(s) 137, 672, 1007, 1432
BspCNI CTCAG 7 cut(s) 256, 267, 318, 966, 1228, 1399, 1701
BspFNI CGCG 1 cut(s) 55
BspHI TCATGA 1 cut(s) 739
BspLI GGNNCC 3 cut(s) 949, 1242, 1513
BspPI GGATC 1 cut(s) 1272
BspT107I GGYRCC 1 cut(s) 947
BspTNI GGTCTC 3 cut(s) 205, 243, 1691
BsrDI GCAATG 5 cut(s) 215, 402, 466, 511, 1632
BsrFI RCCGGY 1 cut(s) 1725
BsrI ACTGG 3 cut(s) 408, 1442, 1456
BssAI RCCGGY 1 cut(s) 1725
BssECI CCNNGG 6 cut(s) 147, 858, 859, 1124, 1260, 1507
BssMI GATC 7 cut(s) 592, 736, 784, 1264, 1285, 1338, 1572
BssSI CACGAG 2 cut(s) 1322, 1361
Bst2BI CACGAG 2 cut(s) 1322, 1361
Bst2UI CCWGG 3 cut(s) 149, 860, 1125
Bst4CI ACNGT 5 cut(s) 128, 416, 881, 1315, 1480
BstAPI GCANNNNNTGC 1 cut(s) 1144
BstC8I GCNNGC 2 cut(s) 273, 1620
BstENI CCTNNNNNAGG 2 cut(s) 257, 1012
BstF5I GGATG 2 cut(s) 949, 1198
BstFNI CGCG 1 cut(s) 55
BstHHI GCGC 4 cut(s) 55, 97, 696, 1068
BstKTI GATC 7 cut(s) 595, 739, 787, 1267, 1288, 1341, 1575
BstMAI GTCTC 5 cut(s) 205, 243, 635, 1226, 1691
BstMBI GATC 7 cut(s) 592, 736, 784, 1264, 1285, 1338, 1572
BstMWI GCNNNNNNNGC 8 cut(s) 206, 239, 392, 493, 656, 1055, 1144, 1489
BstNI CCWGG 3 cut(s) 149, 860, 1125
BstNSI RCATGY 3 cut(s) 587, 1218, 1540
BstSCI CCNGG 5 cut(s) 115, 147, 858, 1123, 1507
BstUI CGCG 1 cut(s) 55
BstV1I GCAGC 8 cut(s) 187, 226, 404, 634, 906, 1354, 1357, 1527
BstV2I GAAGAC 2 cut(s) 1384, 1664
BstX2I RGATCY 1 cut(s) 784
BstYI RGATCY 1 cut(s) 784
Bsu36I CCTNAGG 1 cut(s) 1407
BsuRI GGCC 4 cut(s) 137, 672, 1007, 1432
BtgZI GCGATG 2 cut(s) 188, 1602
BtsCI GGATG 2 cut(s) 949, 1198
BtsI GCAGTG 1 cut(s) 1531
BtsIMutI CAGTG 3 cut(s) 313, 319, 1531
Cac8I GCNNGC 2 cut(s) 273, 1620
CciI TCATGA 1 cut(s) 739
CfoI GCGC 4 cut(s) 55, 97, 696, 1068
Cfr10I RCCGGY 1 cut(s) 1725
Cfr13I GGNCC 1 cut(s) 550
Csp6I GTAC 1 cut(s) 707
CspAI ACCGGT 1 cut(s) 1725
CspCI CAANNNNNGTGG 4 cut(s) 448, 483, 1650, 1685
CviQI GTAC 1 cut(s) 707
DpnI GATC 7 cut(s) 594, 738, 786, 1266, 1287, 1340, 1574
DpnII GATC 7 cut(s) 592, 736, 784, 1264, 1285, 1338, 1572
EciI GGCGGA 1 cut(s) 1349
Ecl136II GAGCTC 1 cut(s) 304
Eco147I AGGCCT 2 cut(s) 137, 1007
Eco24I GRGCYC 2 cut(s) 277, 306
Eco31I GGTCTC 3 cut(s) 205, 243, 1691
Eco47I GGWCC 1 cut(s) 550
Eco53kI GAGCTC 1 cut(s) 304
Eco57I CTGAAG 2 cut(s) 780, 1332
Eco81I CCTNAGG 1 cut(s) 1407
EcoICRI GAGCTC 1 cut(s) 304
EcoNI CCTNNNNNAGG 2 cut(s) 257, 1012
EcoRII CCWGG 3 cut(s) 147, 858, 1123
EcoT22I ATGCAT 2 cut(s) 1311, 1735
EcoT38I GRGCYC 2 cut(s) 277, 306
FalI AAGNNNNNCTT 2 cut(s) 882, 914
FaqI GGGAC 4 cut(s) 240, 562, 572, 878
FauI CCCGC 2 cut(s) 46, 196
FbaI TGATCA 2 cut(s) 736, 1285
FokI GGATG 2 cut(s) 956, 1205
FriOI GRGCYC 2 cut(s) 277, 306
FspAI RTGCGCAY 2 cut(s) 695, 1067
FspBI CTAG 2 cut(s) 872, 1388
FspI TGCGCA 2 cut(s) 695, 1067
GlaI GCGC 4 cut(s) 54, 96, 695, 1067
GsaI CCCAGC 1 cut(s) 583
GsuI CTGGAG 4 cut(s) 320, 372, 1113, 1473
HaeIII GGCC 4 cut(s) 137, 672, 1007, 1432
HapII CCGG 4 cut(s) 117, 1041, 1509, 1726
HhaI GCGC 4 cut(s) 55, 97, 696, 1068
Hin6I GCGC 4 cut(s) 53, 95, 694, 1066
HinP1I GCGC 4 cut(s) 53, 95, 694, 1066
HincII GTYRAC 1 cut(s) 971
HindII GTYRAC 1 cut(s) 971
HindIII AAGCTT 1 cut(s) 330
HinfI GANTC 4 cut(s) 425, 799, 1301, 1557
HpaII CCGG 4 cut(s) 117, 1041, 1509, 1726
HphI GGTGA 2 cut(s) 632, 1280
Hpy166II GTNNAC 2 cut(s) 971, 1534
Hpy188III TCNNGA 7 cut(s) 347, 355, 628, 740, 1169, 1322, 1406
Hpy8I GTNNAC 2 cut(s) 971, 1534
Hpy99I CGWCG 1 cut(s) 1700
HpyCH4III ACNGT 5 cut(s) 128, 416, 881, 1315, 1480
HpyF10VI GCNNNNNNNGC 8 cut(s) 206, 239, 392, 493, 656, 1055, 1144, 1489
HspAI GCGC 4 cut(s) 53, 95, 694, 1066
Ksp22I TGATCA 2 cut(s) 736, 1285
Kzo9I GATC 7 cut(s) 592, 736, 784, 1264, 1285, 1338, 1572
LmnI GCTCC 6 cut(s) 9, 295, 301, 391, 684, 1649
Lsp1109I GCAGC 8 cut(s) 187, 226, 404, 634, 906, 1354, 1357, 1527
LweI GCATC 9 cut(s) 373, 681, 745, 832, 1053, 1183, 1366, 1599, 1705
MaeI CTAG 2 cut(s) 872, 1388
MaeIII GTNAC 4 cut(s) 56, 620, 717, 1414
MalI GATC 7 cut(s) 594, 738, 786, 1266, 1287, 1340, 1574
MboI GATC 7 cut(s) 592, 736, 784, 1264, 1285, 1338, 1572
MboII GAAGA 8 cut(s) 100, 338, 779, 794, 1109, 1384, 1669, 1712
MflI RGATCY 1 cut(s) 784
MhlI GDGCHC 2 cut(s) 277, 306
MluCI AATT 8 cut(s) 188, 368, 512, 825, 1115, 1173, 1186, 1497
MlyI GAGTC 1 cut(s) 808
MmeI TCCRAC 2 cut(s) 108, 140
Mph1103I ATGCAT 2 cut(s) 1311, 1735
MroXI GAANNNNTTC 3 cut(s) 372, 786, 1500
MseI TTAA 5 cut(s) 528, 794, 824, 1074, 1274
MslI CAYNNNNRTG 2 cut(s) 611, 701
MspA1I CMGCKG 2 cut(s) 647, 1058
MspI CCGG 4 cut(s) 117, 1041, 1509, 1726
MspR9I CCNGG 5 cut(s) 117, 149, 860, 1125, 1509
Mva1269I GAATGC 1 cut(s) 696
MvaI CCWGG 3 cut(s) 149, 860, 1125
MvnI CGCG 1 cut(s) 55
MwoI GCNNNNNNNGC 8 cut(s) 206, 239, 392, 493, 656, 1055, 1144, 1489
NciI CCSGG 2 cut(s) 117, 1509
NdeII GATC 7 cut(s) 592, 736, 784, 1264, 1285, 1338, 1572
NlaIV GGNNCC 3 cut(s) 949, 1242, 1513
NmeAIII GCCGAG 1 cut(s) 685
NmuCI GTSAC 2 cut(s) 620, 1414
NsbI TGCGCA 2 cut(s) 695, 1067
NsiI ATGCAT 2 cut(s) 1311, 1735
NspI RCATGY 3 cut(s) 587, 1218, 1540
PagI TCATGA 1 cut(s) 739
PasI CCCWGGG 1 cut(s) 859
PceI AGGCCT 2 cut(s) 137, 1007
PctI GAATGC 1 cut(s) 696
PdmI GAANNNNTTC 3 cut(s) 372, 786, 1500
PfeI GAWTC 3 cut(s) 425, 1301, 1557
PflMI CCANNNNNTGG 1 cut(s) 859
PfoI TCCNGGA 1 cut(s) 115
PinAI ACCGGT 1 cut(s) 1725
PleI GAGTC 1 cut(s) 807
PpsI GAGTC 1 cut(s) 807
Psp124BI GAGCTC 1 cut(s) 306
Psp6I CCWGG 3 cut(s) 147, 858, 1123
PspFI CCCAGC 1 cut(s) 579
PspGI CCWGG 3 cut(s) 147, 858, 1123
PspN4I GGNNCC 3 cut(s) 949, 1242, 1513
PspPI GGNCC 1 cut(s) 550
PsuI RGATCY 1 cut(s) 784
PvuII CAGCTG 2 cut(s) 647, 1058
RsaI GTAC 1 cut(s) 708
RsaNI GTAC 1 cut(s) 707
RseI CAYNNNNRTG 2 cut(s) 611, 701
SacI GAGCTC 1 cut(s) 306
SaqAI TTAA 5 cut(s) 528, 794, 824, 1074, 1274
Sau3AI GATC 7 cut(s) 592, 736, 784, 1264, 1285, 1338, 1572
Sau96I GGNCC 1 cut(s) 550
SchI GAGTC 1 cut(s) 808
ScrFI CCNGG 5 cut(s) 117, 149, 860, 1125, 1509
SduI GDGCHC 2 cut(s) 277, 306
SfaNI GCATC 9 cut(s) 373, 681, 745, 832, 1053, 1183, 1366, 1599, 1705
SinI GGWCC 1 cut(s) 550
SmiMI CAYNNNNRTG 2 cut(s) 611, 701
SmlI CTYRAG 1 cut(s) 1613
SmoI CTYRAG 1 cut(s) 1613
SpeI ACTAGT 1 cut(s) 1387
Sse9I AATT 8 cut(s) 188, 368, 512, 825, 1115, 1173, 1186, 1497
SseBI AGGCCT 2 cut(s) 137, 1007
SsiI CCGC 8 cut(s) 39, 72, 98, 180, 203, 268, 452, 1334
SspMI CTAG 2 cut(s) 872, 1388
SstI GAGCTC 1 cut(s) 306
StuI AGGCCT 2 cut(s) 137, 1007
StyD4I CCNGG 5 cut(s) 115, 147, 858, 1123, 1507
TaaI ACNGT 5 cut(s) 128, 416, 881, 1315, 1480
TaqI TCGA 2 cut(s) 132, 356
TasI AATT 8 cut(s) 188, 368, 512, 825, 1115, 1173, 1186, 1497
TauI GCSGC 2 cut(s) 100, 271
TfiI GAWTC 3 cut(s) 425, 1301, 1557
Tru1I TTAA 5 cut(s) 528, 794, 824, 1074, 1274
Tru9I TTAA 5 cut(s) 528, 794, 824, 1074, 1274
TscAI CASTG 3 cut(s) 313, 319, 1531
TseFI GTSAC 2 cut(s) 620, 1414
TseI GCWGC 8 cut(s) 200, 239, 392, 647, 894, 1367, 1370, 1540
Tsp45I GTSAC 2 cut(s) 620, 1414
TspDTI ATGAA 4 cut(s) 158, 413, 489, 1384
TspGWI ACGGA 1 cut(s) 481
TspRI CASTG 3 cut(s) 313, 319, 1531
Van91I CCANNNNNTGG 1 cut(s) 859
VpaK11BI GGWCC 1 cut(s) 550
XagI CCTNNNNNAGG 2 cut(s) 257, 1012
XapI RAATTY 4 cut(s) 512, 1115, 1173, 1186
XceI RCATGY 3 cut(s) 587, 1218, 1540
XcmI CCANNNNNNNNNTGG 1 cut(s) 613
XmnI GAANNNNTTC 3 cut(s) 372, 786, 1500
XspI CTAG 2 cut(s) 872, 1388
Zsp2I ATGCAT 2 cut(s) 1311, 1735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.