Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003247

Physical Location & Seq

Genomic Coordinates Reverse (-)

5267484 .. 5270186

Gene Structure 2703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g08410.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGAGAAGGAGGAGGATCTTCTCTTAAAGAGTCTTGGGTGGAAGGGAAAAGGATTAATTCAGAGCGCATATGATGCTGAACCCCATTCCGATGGGGTCAAACTAGATGACAGGAAGAAAGAAGGCAGCCCTCAATACTATAAGCAAAAGTTCAGATATATCTTCTGTGATATGGATGGCACCCTTCTCAACAGCAAAAGCCAACTGAGCTCAATGAACATCCAGGCTCTGAAAGAGGCCTCATCAAGGGGTGTGAAAATAGTGATAGCAACAGGAAAAGCTCGGCCAGCTGTGATTCGCGTTTTTAAGGAGGTAGATTTAACTGGAAAAGACGGCATTGTTTCAGAATTTTCTCCTGGGGTTTTCTTGCAGGGATTGCTTGTTTATGGTACACAAGGTCGGGAAATTTTTAGAATGAATTTGGATACAGATGTGTGCAGAGAGGCATGTCGCTACTCTCTGGAGAATGAGGTTCCTCTTATTGCATTCACCGAGGATCGTTGCTTATCTCTATATGATCACCCACTTGTCGATTCCATGCATACTGTATATCACGAGCAAAAGGCAGAGATCATGCCTTCAGTTGAGCATCTTGTAGCTGCTGCTGGCATACAGAAACTAGTCTTCATGGACACTGCTGAGGGAGTGACAACTGCTTTGAGGCCATACTGGTCCGAAGCAACCGGAGATAGTGCCACGGTTGTCCAAACCGTGCCCGACATGCTGGAAATTGTACCCCCCGGAACCTCAAAAGGGCGTGGAGTAAACGTGCTGCTTGATCATTTGGGAGTCACTCCAAAGGAGATCATGGCTATTGGCGATGGGGAAAATGATATCGAGATGCTTGAGCTGGCTTCTTTAGGCATTGCTCTTAGTAACGGGGCAGAGAAGGCGAAGGCTGTGGCTAACGTAATTGGTCTCAGCAACGATGAAGATGGTGTAGCTGATGCAATCTACCGGTACGCATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0042578 GO:0043167 GO:0043169 GO:0044237 GO:0046872 GO:0050308

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_3 UPF0054

Protein Analysis

324

Amino Acids

35.32

Weight (kDa)

4.96

Isoelectric Point (pI)

30.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25870
fragaria_vesca	FvH4_2g35220 FvH4_2g35230
malus_domestica	MD08G1110200.v1.1 MD08G1110300.v1.1
prunus_persica	Prupe.1G444400_v2.0.a1 Prupe.1G444400_v2.0.a1 Prupe.1G444400_v2.0.a1 Prupe.1G444400_v2.0.a1 Prupe.1G444400_v2.0.a1 Prupe.1G444500_v2.0.a1 Prupe.1G444500_v2.0.a1 Prupe.1G444500_v2.0.a1
pyrus_communis	pycom08g09180 pycom15g08410
rosa_chinensis	RchiOBHm_Chr6g0306701 RchiOBHm_Chr6g0306711
rosa_laevigata	RLG00000010771 RLG00000010772
rosa_multiflora	Rmu_sc0005201.1_g000001 Rmu_sc0017725.1_g000001 Rmu_sc0017785.1_g000007 Rmu_sc0017785.1_g000008 Rmu_sc0017786.1_g000007
rosa_roxburghii	Rroxscaffold_7G00161520 Rroxscaffold_7G00161530
rosa_rugosa	Rorug06G0351700 Rorug06G0351700
rosa_samantha	Rh6AG464100 Rh6AG464200 Rh6BG436800 Rh6BG436900 Rh6CG478300 Rh6DG465000 Rh6DG465100
rosa_wichuraiana	Rw6G040430 Rw6G040440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	179
AccII	CGCG	1 cut(s)	300
AclWI	GGATC	2 cut(s)	24, 504
AcoI	YGGCCR	1 cut(s)	284
AcsI	RAATTY	3 cut(s)	347, 405, 418
AcuI	CTGAAG	1 cut(s)	564
AfaI	GTAC	3 cut(s)	391, 735, 962
AfiI	CCNNNNNNNGG	2 cut(s)	246, 753
AgeI	ACCGGT	1 cut(s)	957
AhlI	ACTAGT	1 cut(s)	619
AjnI	CCWGG	2 cut(s)	222, 355
AluBI	AGCT	6 cut(s)	210, 281, 290, 599, 850, 944
AluI	AGCT	6 cut(s)	210, 281, 290, 599, 850, 944
Alw21I	GWGCWC	1 cut(s)	212
Alw26I	GTCTC	1 cut(s)	923
AlwI	GGATC	2 cut(s)	24, 504
AlwNI	CAGNNNCTG	1 cut(s)	229
AoxI	GGCC	3 cut(s)	237, 284, 662
ApeKI	GCWGC	4 cut(s)	126, 599, 602, 772
ApoI	RAATTY	3 cut(s)	347, 405, 418
ArsI	GACNNNNNNTTYG	2 cut(s)	640, 672
AseI	ATTAAT	1 cut(s)	56
AsiGI	ACCGGT	1 cut(s)	957
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	672
AsuC2I	CCSGG	1 cut(s)	741
AsuHPI	GGTGA	2 cut(s)	481, 512
AvaII	GGWCC	1 cut(s)	672
BaeGI	GKGCMC	1 cut(s)	717
BaeI	ACNNNNGTAYC	2 cut(s)	417, 450
BanI	GGYRCC	1 cut(s)	179
BanII	GRGCYC	1 cut(s)	212
BauI	CACGAG	1 cut(s)	554
BbsI	GAAGAC	1 cut(s)	616
Bbv12I	GWGCWC	1 cut(s)	212
BbvCI	CCTCAGC	1 cut(s)	639
BbvI	GCAGC	4 cut(s)	138, 586, 589, 759
BccI	CCATC	4 cut(s)	86, 170, 815, 929
BceAI	ACGGC	1 cut(s)	349
BciT130I	CCWGG	2 cut(s)	224, 357
BciVI	GTATCC	1 cut(s)	418
BclI	TGATCA	2 cut(s)	517, 778
BcnI	CCSGG	1 cut(s)	741
BcoDI	GTCTC	1 cut(s)	923
BcuI	ACTAGT	1 cut(s)	619
BfaI	CTAG	2 cut(s)	104, 620
BfuI	GTATCC	1 cut(s)	418
BisI	GCNGC	4 cut(s)	127, 600, 603, 773
BlsI	GCNGC	4 cut(s)	128, 601, 604, 774
Bme1390I	CCNGG	3 cut(s)	224, 357, 741
Bme18I	GGWCC	1 cut(s)	672
BmgT120I	GGNCC	1 cut(s)	672
BmiI	GGNNCC	3 cut(s)	181, 474, 745
BmrFI	CCNGG	3 cut(s)	224, 357, 741
BmsI	GCATC	4 cut(s)	64, 598, 831, 937
BpiI	GAAGAC	1 cut(s)	616
BpmI	CTGGAG	1 cut(s)	482
Bpu10I	CCTNAGC	1 cut(s)	639
BpuEI	CTTGAG	1 cut(s)	866
BpuMI	CCSGG	1 cut(s)	741
BsaI	GGTCTC	1 cut(s)	923
BsaJI	CCNNGG	4 cut(s)	356, 492, 696, 739
BsaWI	WCCGGW	2 cut(s)	683, 957
BsaXI	ACNNNNNCTCC	2 cut(s)	753, 783
Bsc4I	CCNNNNNNNGG	2 cut(s)	246, 753
Bse118I	RCCGGY	1 cut(s)	957
Bse1I	ACTGG	2 cut(s)	328, 674
Bse3DI	GCAATG	1 cut(s)	864
BseBI	CCWGG	2 cut(s)	224, 357
BseDI	CCNNGG	4 cut(s)	356, 492, 696, 739
BseGI	GGATG	2 cut(s)	181, 219
BseLI	CCNNNNNNNGG	2 cut(s)	246, 753
BseMI	GCAATG	1 cut(s)	864
BseMII	CTCAG	3 cut(s)	197, 630, 934
BseNI	ACTGG	2 cut(s)	328, 674
BseRI	GAGGAG	1 cut(s)	26
BseSI	GKGCMC	1 cut(s)	717
BseXI	GCAGC	4 cut(s)	138, 586, 589, 759
BsgI	GTGCAG	1 cut(s)	457
Bsh1236I	CGCG	1 cut(s)	300
BshFI	GGCC	3 cut(s)	239, 286, 664
BshNI	GGYRCC	1 cut(s)	179
BshTI	ACCGGT	1 cut(s)	957
BsiHKAI	GWGCWC	1 cut(s)	212
BsiSI	CCGG	3 cut(s)	684, 741, 958
BslI	CCNNNNNNNGG	2 cut(s)	246, 753
BsmAI	GTCTC	1 cut(s)	923
BsmI	GAATGC	1 cut(s)	485
BsnI	GGCC	3 cut(s)	239, 286, 664
Bso31I	GGTCTC	1 cut(s)	923
Bsp1286I	GDGCHC	2 cut(s)	212, 717
Bsp143I	GATC	6 cut(s)	16, 496, 517, 570, 778, 804
BspANI	GGCC	3 cut(s)	239, 286, 664
BspCNI	CTCAG	3 cut(s)	198, 631, 933
BspFNI	CGCG	1 cut(s)	300
BspLI	GGNNCC	3 cut(s)	181, 474, 745
BspPI	GGATC	2 cut(s)	24, 504
BspT107I	GGYRCC	1 cut(s)	179
BspTNI	GGTCTC	1 cut(s)	923
BsrDI	GCAATG	1 cut(s)	864
BsrFI	RCCGGY	1 cut(s)	957
BsrI	ACTGG	2 cut(s)	328, 674
BssAI	RCCGGY	1 cut(s)	957
BssECI	CCNNGG	4 cut(s)	356, 492, 696, 739
BssMI	GATC	6 cut(s)	16, 496, 517, 570, 778, 804
BssSI	CACGAG	1 cut(s)	554
Bst2BI	CACGAG	1 cut(s)	554
Bst2UI	CCWGG	2 cut(s)	224, 357
Bst4CI	ACNGT	3 cut(s)	547, 700, 712
BstAPI	GCANNNNNTGC	2 cut(s)	74, 376
BstC8I	GCNNGC	3 cut(s)	288, 607, 852
BstDEI	CTNAG	4 cut(s)	206, 639, 872, 920
BstDSI	CCRYGG	1 cut(s)	696
BstENI	CCTNNNNNAGG	1 cut(s)	244
BstF5I	GGATG	2 cut(s)	181, 219
BstFNI	CGCG	1 cut(s)	300
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	6 cut(s)	19, 499, 520, 573, 781, 807
BstMAI	GTCTC	1 cut(s)	923
BstMBI	GATC	6 cut(s)	16, 496, 517, 570, 778, 804
BstMWI	GCNNNNNNNGC	6 cut(s)	74, 207, 287, 376, 721, 890
BstNI	CCWGG	2 cut(s)	224, 357
BstNSI	RCATGY	2 cut(s)	450, 724
BstSCI	CCNGG	3 cut(s)	222, 355, 739
BstSLI	GKGCMC	1 cut(s)	717
BstUI	CGCG	1 cut(s)	300
BstV1I	GCAGC	4 cut(s)	138, 586, 589, 759
BstV2I	GAAGAC	1 cut(s)	616
BstX2I	RGATCY	1 cut(s)	16
BstXI	CCANNNNNNTGG	1 cut(s)	92
BstYI	RGATCY	1 cut(s)	16
BsuI	GTATCC	1 cut(s)	418
BsuRI	GGCC	3 cut(s)	239, 286, 664
BtgI	CCRYGG	1 cut(s)	696
BtgZI	GCGATG	1 cut(s)	834
BtsCI	GGATG	2 cut(s)	181, 219
BtsI	GCAGTG	1 cut(s)	633
BtsIMutI	CAGTG	1 cut(s)	633
Cac8I	GCNNGC	3 cut(s)	288, 607, 852
CaiI	CAGNNNCTG	1 cut(s)	229
CfoI	GCGC	1 cut(s)	68
Cfr10I	RCCGGY	1 cut(s)	957
Cfr13I	GGNCC	1 cut(s)	672
Csp6I	GTAC	3 cut(s)	390, 734, 961
CspAI	ACCGGT	1 cut(s)	957
CviAII	CATG	6 cut(s)	447, 538, 574, 628, 721, 808
CviQI	GTAC	3 cut(s)	390, 734, 961
DdeI	CTNAG	4 cut(s)	206, 639, 872, 920
DpnI	GATC	6 cut(s)	18, 498, 519, 572, 780, 806
DpnII	GATC	6 cut(s)	16, 496, 517, 570, 778, 804
EaeI	YGGCCR	1 cut(s)	284
Ecl136II	GAGCTC	1 cut(s)	210
Eco147I	AGGCCT	1 cut(s)	239
Eco24I	GRGCYC	1 cut(s)	212
Eco31I	GGTCTC	1 cut(s)	923
Eco32I	GATATC	1 cut(s)	835
Eco47I	GGWCC	1 cut(s)	672
Eco53kI	GAGCTC	1 cut(s)	210
Eco57I	CTGAAG	1 cut(s)	564
EcoICRI	GAGCTC	1 cut(s)	210
EcoNI	CCTNNNNNAGG	1 cut(s)	244
EcoRII	CCWGG	2 cut(s)	222, 355
EcoRV	GATATC	1 cut(s)	835
EcoT22I	ATGCAT	1 cut(s)	543
EcoT38I	GRGCYC	1 cut(s)	212
FaeI	CATG	6 cut(s)	450, 541, 577, 631, 724, 811
FatI	CATG	6 cut(s)	446, 537, 573, 627, 720, 807
FauNDI	CATATG	1 cut(s)	70
FbaI	TGATCA	2 cut(s)	517, 778
Fnu4HI	GCNGC	4 cut(s)	127, 600, 603, 773
FokI	GGATG	2 cut(s)	188, 206
FriOI	GRGCYC	1 cut(s)	212
Fsp4HI	GCNGC	4 cut(s)	127, 600, 603, 773
FspBI	CTAG	2 cut(s)	104, 620
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	4 cut(s)	127, 600, 603, 773
GsuI	CTGGAG	1 cut(s)	482
HaeIII	GGCC	3 cut(s)	239, 286, 664
HapII	CCGG	3 cut(s)	684, 741, 958
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	6 cut(s)	450, 541, 577, 631, 724, 811
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HinfI	GANTC	4 cut(s)	31, 295, 533, 789
HpaII	CCGG	3 cut(s)	684, 741, 958
HphI	GGTGA	2 cut(s)	481, 512
Hpy166II	GTNNAC	2 cut(s)	392, 766
Hpy188I	TCNGA	6 cut(s)	63, 91, 155, 231, 346, 676
Hpy188III	TCNNGA	4 cut(s)	401, 461, 554, 838
Hpy8I	GTNNAC	2 cut(s)	392, 766
HpyAV	CCTTC	6 cut(s)	37, 116, 194, 588, 883, 889
HpyCH4III	ACNGT	3 cut(s)	547, 700, 712
HpyCH4IV	ACGT	2 cut(s)	768, 909
HpyCH4V	TGCA	5 cut(s)	370, 438, 485, 541, 950
HpyF10VI	GCNNNNNNNGC	6 cut(s)	74, 207, 287, 376, 721, 890
HpyF3I	CTNAG	4 cut(s)	206, 639, 872, 920
HpySE526I	ACGT	2 cut(s)	768, 909
Hsp92II	CATG	6 cut(s)	450, 541, 577, 631, 724, 811
HspAI	GCGC	1 cut(s)	66
Ksp22I	TGATCA	2 cut(s)	517, 778
Kzo9I	GATC	6 cut(s)	16, 496, 517, 570, 778, 804
Lsp1109I	GCAGC	4 cut(s)	138, 586, 589, 759
LweI	GCATC	4 cut(s)	64, 598, 831, 937
MaeI	CTAG	2 cut(s)	104, 620
MaeII	ACGT	2 cut(s)	768, 909
MaeIII	GTNAC	3 cut(s)	646, 790, 875
MalI	GATC	6 cut(s)	18, 498, 519, 572, 780, 806
MboI	GATC	6 cut(s)	16, 496, 517, 570, 778, 804
MboII	GAAGA	5 cut(s)	11, 127, 154, 616, 944
MflI	RGATCY	1 cut(s)	16
MhlI	GDGCHC	2 cut(s)	212, 717
MluCI	AATT	6 cut(s)	57, 347, 405, 418, 729, 912
MlyI	GAGTC	2 cut(s)	40, 798
Mph1103I	ATGCAT	1 cut(s)	543
MseI	TTAA	4 cut(s)	26, 56, 306, 320
MslI	CAYNNNNRTG	1 cut(s)	90
MspA1I	CMGCKG	1 cut(s)	290
MspI	CCGG	3 cut(s)	684, 741, 958
MspR9I	CCNGG	3 cut(s)	224, 357, 741
Mva1269I	GAATGC	1 cut(s)	485
MvaI	CCWGG	2 cut(s)	224, 357
MvnI	CGCG	1 cut(s)	300
MwoI	GCNNNNNNNGC	6 cut(s)	74, 207, 287, 376, 721, 890
NciI	CCSGG	1 cut(s)	741
NdeI	CATATG	1 cut(s)	70
NdeII	GATC	6 cut(s)	16, 496, 517, 570, 778, 804
NlaIII	CATG	6 cut(s)	450, 541, 577, 631, 724, 811
NlaIV	GGNNCC	3 cut(s)	181, 474, 745
NmeAIII	GCCGAG	1 cut(s)	262
NmuCI	GTSAC	2 cut(s)	646, 790
NsiI	ATGCAT	1 cut(s)	543
NspI	RCATGY	2 cut(s)	450, 724
PceI	AGGCCT	1 cut(s)	239
PctI	GAATGC	1 cut(s)	485
PfeI	GAWTC	2 cut(s)	295, 533
PinAI	ACCGGT	1 cut(s)	957
PkrI	GCNGC	4 cut(s)	128, 601, 604, 774
PleI	GAGTC	2 cut(s)	39, 797
PpsI	GAGTC	2 cut(s)	39, 797
PshBI	ATTAAT	1 cut(s)	56
Psp124BI	GAGCTC	1 cut(s)	212
Psp6I	CCWGG	2 cut(s)	222, 355
PspGI	CCWGG	2 cut(s)	222, 355
PspN4I	GGNNCC	3 cut(s)	181, 474, 745
PspPI	GGNCC	1 cut(s)	672
PstNI	CAGNNNCTG	1 cut(s)	229
PsuI	RGATCY	1 cut(s)	16
PvuII	CAGCTG	1 cut(s)	290
RsaI	GTAC	3 cut(s)	391, 735, 962
RsaNI	GTAC	3 cut(s)	390, 734, 961
RseI	CAYNNNNRTG	1 cut(s)	90
SacI	GAGCTC	1 cut(s)	212
SaqAI	TTAA	4 cut(s)	26, 56, 306, 320
SatI	GCNGC	4 cut(s)	127, 600, 603, 773
Sau3AI	GATC	6 cut(s)	16, 496, 517, 570, 778, 804
Sau96I	GGNCC	1 cut(s)	672
SchI	GAGTC	2 cut(s)	40, 798
ScrFI	CCNGG	3 cut(s)	224, 357, 741
SduI	GDGCHC	2 cut(s)	212, 717
SfaNI	GCATC	4 cut(s)	64, 598, 831, 937
SinI	GGWCC	1 cut(s)	672
SmiMI	CAYNNNNRTG	1 cut(s)	90
SmlI	CTYRAG	1 cut(s)	845
SmoI	CTYRAG	1 cut(s)	845
SpeI	ACTAGT	1 cut(s)	619
Sse9I	AATT	6 cut(s)	57, 347, 405, 418, 729, 912
SseBI	AGGCCT	1 cut(s)	239
SspMI	CTAG	2 cut(s)	104, 620
SstI	GAGCTC	1 cut(s)	212
StuI	AGGCCT	1 cut(s)	239
StyD4I	CCNGG	3 cut(s)	222, 355, 739
TaaI	ACNGT	3 cut(s)	547, 700, 712
TaiI	ACGT	2 cut(s)	771, 912
TaqI	TCGA	2 cut(s)	531, 837
TasI	AATT	6 cut(s)	57, 347, 405, 418, 729, 912
TfiI	GAWTC	2 cut(s)	295, 533
Tru1I	TTAA	4 cut(s)	26, 56, 306, 320
Tru9I	TTAA	4 cut(s)	26, 56, 306, 320
TscAI	CASTG	1 cut(s)	640
TseFI	GTSAC	2 cut(s)	646, 790
TseI	GCWGC	4 cut(s)	126, 599, 602, 772
Tsp45I	GTSAC	2 cut(s)	646, 790
TspDTI	ATGAA	4 cut(s)	230, 431, 616, 945
TspRI	CASTG	1 cut(s)	640
VpaK11BI	GGWCC	1 cut(s)	672
VspI	ATTAAT	1 cut(s)	56
XagI	CCTNNNNNAGG	1 cut(s)	244
XapI	RAATTY	3 cut(s)	347, 405, 418
XceI	RCATGY	2 cut(s)	450, 724
XspI	CTAG	2 cut(s)	104, 620
Zsp2I	ATGCAT	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.