Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017725.1

Orthogroup ID

OG0003247

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2150

Gene Structure 2150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017725.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

atggcgcgttgcgtcccacgcgcctccctgatatccaccgcgtcgtttccgaaactggtcgtccctggcagaacgaatcgcttcgaggcctcgaaatctgcgctattcggccggaaattccacgcgctgtgccgttacgatcggagagacgctgcgaggccattggtgaggacgcgagtcttcgctgagcagaaggagaaggagaaggagctccaggtcaatgtgagcgttagcatcgaacaaggtttgcctgaggatcacgaaatatcgaggattgccgaattgcttaggctaaatgttcgaactgcattgaacctagcgtttggtggattgaaagattctggtgatggttttgaaagcgcggagctttctgtgattctgtgcaatgatgtgtttatgagaaaacgtaacaaggaatggagagacgaggaccgtgctactggtgttgtttccaagtccaagcatgtgtctggtcttaagattccaaatgttgtgttgggtgacattgtgatttctgttgagatggcggcgaggcaagcagagcaaagaggccacacacttcttgatgagatgcgccttctcatggtgcagggattgttacatttattgaggtttgatcatgagatcagtaaagaggctacaggggaaatggagaaggaggaggaacgtcttttagacagtcttgggtggaaggggaaaagaatggttgcagtttcagtttcagtttccgaaacccatccaaaatccaacgaggggaaaaatgacaggaagaaagaaggcagcctccgattttataaaccaaagttcaaatatgtgttctgtgacatggatggaaccctcctcaacagcaaaagtcaattgagttcaaccactgccagggctctcaaagaagcctcatcaaggggtgtgaaaatagtgattgccaccggtaaagtaagcacatcttcttttgatcattttcaagatatgatagttgaaatgcgctctcatcttgttaacagcggtttggaacaggctcgtccagctgtgatgcgcgtctttaagatggtagatttagctggaaaagatggcattgtttcagaattttctcctggggtttacttgcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901259 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_3 UPF0054

Protein Analysis

369

Amino Acids

41.35

Weight (kDa)

9.43

Isoelectric Point (pI)

32.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25870
fragaria_vesca	FvH4_2g35220 FvH4_2g35230
malus_domestica	MD08G1110200.v1.1 MD08G1110300.v1.1
prunus_persica	Prupe.1G444400_v2.0.a1 Prupe.1G444400_v2.0.a1 Prupe.1G444400_v2.0.a1 Prupe.1G444400_v2.0.a1 Prupe.1G444400_v2.0.a1 Prupe.1G444500_v2.0.a1 Prupe.1G444500_v2.0.a1 Prupe.1G444500_v2.0.a1
pyrus_communis	pycom08g09180 pycom15g08410
rosa_chinensis	RchiOBHm_Chr6g0306701 RchiOBHm_Chr6g0306711
rosa_laevigata	RLG00000010771 RLG00000010772
rosa_multiflora	Rmu_sc0005201.1_g000001 Rmu_sc0017725.1_g000001 Rmu_sc0017785.1_g000007 Rmu_sc0017785.1_g000008 Rmu_sc0017786.1_g000007
rosa_roxburghii	Rroxscaffold_7G00161520 Rroxscaffold_7G00161530
rosa_rugosa	Rorug06G0351700 Rorug06G0351700
rosa_samantha	Rh6AG464100 Rh6AG464200 Rh6BG436800 Rh6BG436900 Rh6CG478300 Rh6DG465000 Rh6DG465100
rosa_wichuraiana	Rw6G040430 Rw6G040440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	795
AccII	CGCG	7 cut(s)	7, 21, 41, 125, 175, 362, 1035
AciI	CCGC	4 cut(s)	39, 362, 527, 1002
AclWI	GGATC	1 cut(s)	264
AcoI	YGGCCR	1 cut(s)	109
AcsI	RAATTY	2 cut(s)	116, 1082
AfiI	CCNNNNNNNGG	4 cut(s)	583, 753, 876, 900
AflII	CTTAAG	1 cut(s)	476
AgeI	ACCGGT	1 cut(s)	926
AgsI	TTSAA	7 cut(s)	313, 334, 356, 808, 867, 962, 977
AjnI	CCWGG	4 cut(s)	64, 213, 875, 1090
AluBI	AGCT	4 cut(s)	211, 367, 1025, 1058
AluI	AGCT	4 cut(s)	211, 367, 1025, 1058
Alw21I	GWGCWC	1 cut(s)	213
Alw26I	GTCTC	2 cut(s)	141, 417
AlwI	GGATC	1 cut(s)	264
AoxI	GGCC	4 cut(s)	87, 109, 158, 550
ApeKI	GCWGC	2 cut(s)	152, 780
ApoI	RAATTY	2 cut(s)	116, 1082
AsiGI	ACCGGT	1 cut(s)	926
Asp700I	GAANNNNTTC	1 cut(s)	80
AspLEI	GCGC	8 cut(s)	7, 23, 103, 127, 362, 576, 984, 1035
AspS9I	GGNCC	1 cut(s)	430
AsuHPI	GGTGA	3 cut(s)	178, 356, 512
AsuII	TTCGAA	1 cut(s)	301
AvaII	GGWCC	1 cut(s)	430
AxyI	CCTNAGG	1 cut(s)	252
BanII	GRGCYC	2 cut(s)	213, 883
BbsI	GAAGAC	1 cut(s)	172
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	2 cut(s)	139, 792
BccI	CCATC	6 cut(s)	341, 517, 744, 824, 1039, 1061
BceAI	ACGGC	1 cut(s)	117
BcgI	CGANNNNNNTGC	2 cut(s)	416, 450
BciT130I	CCWGG	4 cut(s)	66, 215, 877, 1092
BclI	TGATCA	2 cut(s)	616, 952
BcoDI	GTCTC	2 cut(s)	141, 417
BfaI	CTAG	1 cut(s)	317
BfmI	CTRYAG	1 cut(s)	639
BfrI	CTTAAG	1 cut(s)	476
BisI	GCNGC	3 cut(s)	153, 528, 781
BlpI	GCTNAGC	1 cut(s)	186
BlsI	GCNGC	3 cut(s)	154, 529, 782
Bme1390I	CCNGG	4 cut(s)	66, 215, 877, 1092
Bme18I	GGWCC	1 cut(s)	430
BmgT120I	GGNCC	1 cut(s)	430
BmiI	GGNNCC	1 cut(s)	835
BmrFI	CCNGG	4 cut(s)	66, 215, 877, 1092
BmsI	GCATC	3 cut(s)	243, 561, 1020
BoxI	GACNNNNGTC	1 cut(s)	176
BpiI	GAAGAC	1 cut(s)	172
BpmI	CTGGAG	1 cut(s)	197
Bpu10I	CCTNAGC	1 cut(s)	287
Bpu1102I	GCTNAGC	1 cut(s)	186
Bpu14I	TTCGAA	1 cut(s)	301
BsaJI	CCNNGG	3 cut(s)	64, 876, 1091
BsaWI	WCCGGW	1 cut(s)	926
Bsc4I	CCNNNNNNNGG	4 cut(s)	583, 753, 876, 900
Bse118I	RCCGGY	1 cut(s)	926
Bse1I	ACTGG	2 cut(s)	60, 445
Bse21I	CCTNAGG	1 cut(s)	252
Bse3DI	GCAATG	1 cut(s)	391
BseBI	CCWGG	4 cut(s)	66, 215, 877, 1092
BseDI	CCNNGG	3 cut(s)	64, 876, 1091
BseGI	GGATG	2 cut(s)	736, 835
BseLI	CCNNNNNNNGG	4 cut(s)	583, 753, 876, 900
BseMI	GCAATG	1 cut(s)	391
BseMII	CTCAG	2 cut(s)	177, 243
BseNI	ACTGG	2 cut(s)	60, 445
BseRI	GAGGAG	2 cut(s)	674, 830
BseX3I	CGGCCG	1 cut(s)	109
BseXI	GCAGC	2 cut(s)	139, 792
BsgI	GTGCAG	1 cut(s)	608
Bsh1236I	CGCG	7 cut(s)	7, 21, 41, 125, 175, 362, 1035
Bsh1285I	CGRYCG	2 cut(s)	112, 142
BshFI	GGCC	4 cut(s)	89, 111, 160, 552
BshTI	ACCGGT	1 cut(s)	926
BsiEI	CGRYCG	2 cut(s)	112, 142
BsiHKAI	GWGCWC	1 cut(s)	213
BsiSI	CCGG	2 cut(s)	112, 927
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	4 cut(s)	583, 753, 876, 900
BsmAI	GTCTC	2 cut(s)	141, 417
BsmBI	CGTCTC	2 cut(s)	141, 417
BsmFI	GGGAC	1 cut(s)	47
BsnI	GGCC	4 cut(s)	89, 111, 160, 552
Bsp119I	TTCGAA	1 cut(s)	301
Bsp1286I	GDGCHC	2 cut(s)	213, 883
Bsp143I	GATC	5 cut(s)	139, 256, 616, 624, 952
Bsp1720I	GCTNAGC	1 cut(s)	186
BspACI	CCGC	4 cut(s)	39, 362, 527, 1002
BspANI	GGCC	4 cut(s)	89, 111, 160, 552
BspCNI	CTCAG	2 cut(s)	178, 244
BspFNI	CGCG	7 cut(s)	7, 21, 41, 125, 175, 362, 1035
BspHI	TCATGA	1 cut(s)	619
BspLI	GGNNCC	1 cut(s)	835
BspPI	GGATC	1 cut(s)	264
BspT104I	TTCGAA	1 cut(s)	301
BspTI	CTTAAG	1 cut(s)	476
BsrDI	GCAATG	1 cut(s)	391
BsrFI	RCCGGY	1 cut(s)	926
BsrI	ACTGG	2 cut(s)	60, 445
BssAI	RCCGGY	1 cut(s)	926
BssECI	CCNNGG	3 cut(s)	64, 876, 1091
BssMI	GATC	5 cut(s)	139, 256, 616, 624, 952
Bst2UI	CCWGG	4 cut(s)	66, 215, 877, 1092
Bst4CI	ACNGT	2 cut(s)	434, 680
BstAFI	CTTAAG	1 cut(s)	476
BstBI	TTCGAA	1 cut(s)	301
BstC8I	GCNNGC	1 cut(s)	537
BstDEI	CTNAG	3 cut(s)	186, 252, 287
BstENI	CCTNNNNNAGG	1 cut(s)	898
BstF5I	GGATG	2 cut(s)	736, 835
BstFNI	CGCG	7 cut(s)	7, 21, 41, 125, 175, 362, 1035
BstHHI	GCGC	8 cut(s)	7, 23, 103, 127, 362, 576, 984, 1035
BstKTI	GATC	5 cut(s)	142, 259, 619, 627, 955
BstMAI	GTCTC	2 cut(s)	141, 417
BstMBI	GATC	5 cut(s)	139, 256, 616, 624, 952
BstMCI	CGRYCG	2 cut(s)	112, 142
BstMWI	GCNNNNNNNGC	4 cut(s)	18, 536, 541, 1022
BstNI	CCWGG	4 cut(s)	66, 215, 877, 1092
BstNSI	RCATGY	1 cut(s)	467
BstPAI	GACNNNNGTC	1 cut(s)	176
BstSCI	CCNGG	4 cut(s)	64, 213, 875, 1090
BstSFI	CTRYAG	1 cut(s)	639
BstUI	CGCG	7 cut(s)	7, 21, 41, 125, 175, 362, 1035
BstV1I	GCAGC	2 cut(s)	139, 792
BstV2I	GAAGAC	1 cut(s)	172
BstZI	CGGCCG	1 cut(s)	109
Bsu36I	CCTNAGG	1 cut(s)	252
BsuRI	GGCC	4 cut(s)	89, 111, 160, 552
BtsCI	GGATG	2 cut(s)	736, 835
BtsI	GCAGTG	1 cut(s)	870
BtsIMutI	CAGTG	1 cut(s)	870
Cac8I	GCNNGC	1 cut(s)	537
CciI	TCATGA	1 cut(s)	619
CfoI	GCGC	8 cut(s)	7, 23, 103, 127, 362, 576, 984, 1035
Cfr10I	RCCGGY	1 cut(s)	926
Cfr13I	GGNCC	1 cut(s)	430
CseI	GACGC	4 cut(s)	30, 158, 181, 1024
CspAI	ACCGGT	1 cut(s)	926
CviAII	CATG	4 cut(s)	464, 583, 620, 826
DdeI	CTNAG	3 cut(s)	186, 252, 287
DpnI	GATC	5 cut(s)	141, 258, 618, 626, 954
DpnII	GATC	5 cut(s)	139, 256, 616, 624, 952
EaeI	YGGCCR	1 cut(s)	109
EagI	CGGCCG	1 cut(s)	109
Ecl136II	GAGCTC	1 cut(s)	211
EclXI	CGGCCG	1 cut(s)	109
Eco147I	AGGCCT	1 cut(s)	89
Eco24I	GRGCYC	2 cut(s)	213, 883
Eco32I	GATATC	1 cut(s)	33
Eco47I	GGWCC	1 cut(s)	430
Eco52I	CGGCCG	1 cut(s)	109
Eco53kI	GAGCTC	1 cut(s)	211
Eco81I	CCTNAGG	1 cut(s)	252
EcoICRI	GAGCTC	1 cut(s)	211
EcoNI	CCTNNNNNAGG	1 cut(s)	898
EcoRII	CCWGG	4 cut(s)	64, 213, 875, 1090
EcoRV	GATATC	1 cut(s)	33
EcoT38I	GRGCYC	2 cut(s)	213, 883
Esp3I	CGTCTC	2 cut(s)	141, 417
FaeI	CATG	4 cut(s)	467, 586, 623, 829
FaiI	YATR	8 cut(s)	398, 465, 584, 621, 795, 813, 827, 968
FalI	AAGNNNNNCTT	2 cut(s)	928, 960
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	4 cut(s)	463, 582, 619, 825
FbaI	TGATCA	2 cut(s)	616, 952
Fnu4HI	GCNGC	3 cut(s)	153, 528, 781
FokI	GGATG	2 cut(s)	723, 842
FriOI	GRGCYC	2 cut(s)	213, 883
Fsp4HI	GCNGC	3 cut(s)	153, 528, 781
FspBI	CTAG	1 cut(s)	317
GlaI	GCGC	8 cut(s)	6, 22, 102, 126, 361, 575, 983, 1034
GluI	GCNGC	3 cut(s)	153, 528, 781
GsuI	CTGGAG	1 cut(s)	197
HaeIII	GGCC	4 cut(s)	89, 111, 160, 552
HapII	CCGG	2 cut(s)	112, 927
HgaI	GACGC	4 cut(s)	30, 158, 181, 1024
HhaI	GCGC	8 cut(s)	7, 23, 103, 127, 362, 576, 984, 1035
Hin1II	CATG	4 cut(s)	467, 586, 623, 829
Hin6I	GCGC	8 cut(s)	5, 21, 101, 125, 360, 574, 982, 1033
HinP1I	GCGC	8 cut(s)	5, 21, 101, 125, 360, 574, 982, 1033
HincII	GTYRAC	1 cut(s)	997
HindII	GTYRAC	1 cut(s)	997
HinfI	GANTC	5 cut(s)	76, 177, 338, 376, 481
HpaI	GTTAAC	1 cut(s)	997
HpaII	CCGG	2 cut(s)	112, 927
HphI	GGTGA	3 cut(s)	178, 356, 512
Hpy166II	GTNNAC	2 cut(s)	997, 1099
Hpy188I	TCNGA	5 cut(s)	51, 144, 730, 788, 1081
Hpy188III	TCNNGA	4 cut(s)	260, 563, 620, 962
Hpy8I	GTNNAC	2 cut(s)	997, 1099
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	7 cut(s)	187, 193, 199, 587, 649, 685, 770
HpyCH4III	ACNGT	2 cut(s)	434, 680
HpyCH4IV	ACGT	2 cut(s)	406, 667
HpyCH4V	TGCA	5 cut(s)	308, 384, 589, 710, 1105
HpyF10VI	GCNNNNNNNGC	4 cut(s)	18, 536, 541, 1022
HpyF3I	CTNAG	3 cut(s)	186, 252, 287
HpySE526I	ACGT	2 cut(s)	406, 667
Hsp92II	CATG	4 cut(s)	467, 586, 623, 829
HspAI	GCGC	8 cut(s)	5, 21, 101, 125, 360, 574, 982, 1033
Ksp22I	TGATCA	2 cut(s)	616, 952
KspAI	GTTAAC	1 cut(s)	997
Kzo9I	GATC	5 cut(s)	139, 256, 616, 624, 952
LmnI	GCTCC	3 cut(s)	208, 216, 364
Lsp1109I	GCAGC	2 cut(s)	139, 792
LweI	GCATC	3 cut(s)	243, 561, 1020
MaeI	CTAG	1 cut(s)	317
MaeII	ACGT	2 cut(s)	406, 667
MaeIII	GTNAC	5 cut(s)	134, 407, 500, 597, 821
MalI	GATC	5 cut(s)	141, 258, 618, 626, 954
MboI	GATC	5 cut(s)	139, 256, 616, 624, 952
MboII	GAAGA	3 cut(s)	172, 781, 936
MfeI	CAATTG	1 cut(s)	857
MhlI	GDGCHC	2 cut(s)	213, 883
MluCI	AATT	4 cut(s)	116, 281, 857, 1082
MlyI	GAGTC	1 cut(s)	186
MmeI	TCCRAC	1 cut(s)	771
MroXI	GAANNNNTTC	1 cut(s)	80
MseI	TTAA	3 cut(s)	477, 996, 1041
MspA1I	CMGCKG	2 cut(s)	1002, 1025
MspCI	CTTAAG	1 cut(s)	476
MspI	CCGG	2 cut(s)	112, 927
MspR9I	CCNGG	4 cut(s)	66, 215, 877, 1092
MunI	CAATTG	1 cut(s)	857
MvaI	CCWGG	4 cut(s)	66, 215, 877, 1092
MvnI	CGCG	7 cut(s)	7, 21, 41, 125, 175, 362, 1035
MwoI	GCNNNNNNNGC	4 cut(s)	18, 536, 541, 1022
NdeII	GATC	5 cut(s)	139, 256, 616, 624, 952
NlaIII	CATG	4 cut(s)	467, 586, 623, 829
NlaIV	GGNNCC	1 cut(s)	835
NmuCI	GTSAC	2 cut(s)	500, 821
NspI	RCATGY	1 cut(s)	467
NspV	TTCGAA	1 cut(s)	301
PagI	TCATGA	1 cut(s)	619
PceI	AGGCCT	1 cut(s)	89
PdmI	GAANNNNTTC	1 cut(s)	80
PfeI	GAWTC	4 cut(s)	76, 338, 376, 481
PinAI	ACCGGT	1 cut(s)	926
PkrI	GCNGC	3 cut(s)	154, 529, 782
Ple19I	CGATCG	1 cut(s)	142
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
PshAI	GACNNNNGTC	1 cut(s)	176
PsiI	TTATAA	1 cut(s)	795
Psp124BI	GAGCTC	1 cut(s)	213
Psp6I	CCWGG	4 cut(s)	64, 213, 875, 1090
PspGI	CCWGG	4 cut(s)	64, 213, 875, 1090
PspN4I	GGNNCC	1 cut(s)	835
PspPI	GGNCC	1 cut(s)	430
PvuI	CGATCG	1 cut(s)	142
PvuII	CAGCTG	1 cut(s)	1025
SacI	GAGCTC	1 cut(s)	213
SaqAI	TTAA	3 cut(s)	477, 996, 1041
SatI	GCNGC	3 cut(s)	153, 528, 781
Sau3AI	GATC	5 cut(s)	139, 256, 616, 624, 952
Sau96I	GGNCC	1 cut(s)	430
SchI	GAGTC	1 cut(s)	186
ScrFI	CCNGG	4 cut(s)	66, 215, 877, 1092
SduI	GDGCHC	2 cut(s)	213, 883
SfaNI	GCATC	3 cut(s)	243, 561, 1020
SfcI	CTRYAG	1 cut(s)	639
SfuI	TTCGAA	1 cut(s)	301
SinI	GGWCC	1 cut(s)	430
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	4 cut(s)	116, 281, 857, 1082
SseBI	AGGCCT	1 cut(s)	89
SsiI	CCGC	4 cut(s)	39, 362, 527, 1002
SspMI	CTAG	1 cut(s)	317
SstI	GAGCTC	1 cut(s)	213
StuI	AGGCCT	1 cut(s)	89
StyD4I	CCNGG	4 cut(s)	64, 213, 875, 1090
TaaI	ACNGT	2 cut(s)	434, 680
TaiI	ACGT	2 cut(s)	409, 670
TaqI	TCGA	5 cut(s)	84, 92, 237, 269, 301
TasI	AATT	4 cut(s)	116, 281, 857, 1082
TauI	GCSGC	1 cut(s)	530
TfiI	GAWTC	4 cut(s)	76, 338, 376, 481
Tru1I	TTAA	3 cut(s)	477, 996, 1041
Tru9I	TTAA	3 cut(s)	477, 996, 1041
TscAI	CASTG	1 cut(s)	877
TseFI	GTSAC	2 cut(s)	500, 821
TseI	GCWGC	2 cut(s)	152, 780
Tsp45I	GTSAC	2 cut(s)	500, 821
TspRI	CASTG	1 cut(s)	877
Vha464I	CTTAAG	1 cut(s)	476
VpaK11BI	GGWCC	1 cut(s)	430
XagI	CCTNNNNNAGG	1 cut(s)	898
XapI	RAATTY	2 cut(s)	116, 1082
XceI	RCATGY	1 cut(s)	467
XmnI	GAANNNNTTC	1 cut(s)	80
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.