Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001087

Physical Location & Seq

Genomic Coordinates Forward (+)

14665667 .. 14668250

Gene Structure 2584 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G34770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGTTGCTCAGGGATTCACTGTGGATCTTAAAAAGCCCCTTGTATTTCAGGTTGGTCATCTTGGAGAAGATTATGAGGAATGGGTTCACCAACCTATCGCGACCAAGGAAGGCCCTCGGTTTTTTCAGAGTGACTTTTGGGAGTTCTTGACACTTACAGTTTGGTGGGCAGTTCCTGTCATTTGGTTGCCAGTTGTAGTCTGGTGCATATCAAGGTCAGTAAGTATGGGATGTTCACTTCCAGAAATCGTCCCAATTGTTGTCATGGGAATATTCATCTGGACATTTTTTGAATACGTTCTTCACCGGTTCGTTTTCCACATAAAAACGAAGAGTTACTGGGGAAACACTGCACACTATCTTATTCACGGATGCCATCATAAGCACCCGATGGACCACCTTCGGCTCGTCTTTCCTCCTACTGCAACAGCGATTTTATGCTTTCCGTTCTGGAACATTGCGAAGGCTATCTCAACTCCTTCAACCGCACCTGCATTGTTTGGTGGAGGCATGCTCGGATATGTGATGTACGATGTCACTCATTATTACCTTCACCATGCCCAACCTACTAGACCAGTGACCAAAAATCTCAAGAAGTACCATTTGAATCATCACTTCAGGATTCAGGACAAAGGATTTGGTATAACTTCGTCGTTATGGGACATAGTCTTTGGGACACTTCCCACCACAAAAGCCCCCAGAAAAGAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

237

Amino Acids

27.42

Weight (kDa)

9.0

Isoelectric Point (pI)

40.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	87 - 226	5.9e-16	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34770 AT4G20870 AT4G20870
fragaria_vesca	FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10760 FvH4_3g10760 FvH4_3g10760 FvH4_3g10780 FvH4_3g10780 FvH4_3g10780
malus_domestica	MD05G1268900.v1.1
prunus_persica	Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1
pyrus_communis	pycom05g25190 pycom10g20540
rosa_chinensis	RchiOBHm_Chr5g0017441 RchiOBHm_Chr5g0017481 RchiOBHm_Chr5g0017491 RchiOBHm_Chr5g0017501
rosa_laevigata	RLG00000032287 RLG00000032288 RLG00000032292 RLG00000032294
rosa_multiflora	Rmu_sc0007392.1_g000004 Rmu_sc0013973.1_g000006
rosa_roxburghii	Rroxscaffold_1G00059930 Rroxscaffold_1G00059950
rosa_rugosa	Rorug05G0035400 Rorug05G0035500 Rorug05G0035800 Rorug05G0035900 Rorug05G0036000 Rorug05G0036100 Rorug05G0036200 Rorug05G0036300 Rorug05G0036400 Rorug05G0036500 Rorug05G0036600
rosa_samantha	Rh5AG130200 Rh5AG130400 Rh5BG128400 Rh5BG128600 Rh5CG140900 Rh5DG130400 Rh5DG130600 Rh5DG130700 Rh5DG130800 Rh7BG398200
rosa_wichuraiana	Rw5G011240 Rw5G011250 Rw5G011260 Rw5G011270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	499
Acc36I	ACCTGC	1 cut(s)	499
AccII	CGCG	1 cut(s)	101
AciI	CCGC	1 cut(s)	486
AclWI	GGATC	1 cut(s)	33
AcuI	CTGAAG	1 cut(s)	601
AfaI	GTAC	2 cut(s)	530, 599
AgeI	ACCGGT	1 cut(s)	306
AgsI	TTSAA	3 cut(s)	293, 483, 607
AlwI	GGATC	1 cut(s)	33
AlwNI	CAGNNNCTG	1 cut(s)	176
AoxI	GGCC	1 cut(s)	112
ArsI	GACNNNNNNTTYG	4 cut(s)	620, 652, 653, 685
AsiGI	ACCGGT	1 cut(s)	306
Asp700I	GAANNNNTTC	2 cut(s)	84, 297
AspS9I	GGNCC	2 cut(s)	113, 394
AsuHPI	GGTGA	3 cut(s)	80, 296, 545
AvaII	GGWCC	1 cut(s)	394
BccI	CCATC	2 cut(s)	384, 385
BfaI	CTAG	1 cut(s)	570
BfuAI	ACCTGC	1 cut(s)	499
Bme18I	GGWCC	1 cut(s)	394
BmgT120I	GGNCC	2 cut(s)	113, 394
BmrI	ACTGGG	1 cut(s)	349
BmsI	GCATC	1 cut(s)	362
BmuI	ACTGGG	1 cut(s)	349
BplI	GAGNNNNNCTC	2 cut(s)	498, 530
Bpu10I	CCTNAGC	1 cut(s)	9
BpuEI	CTTGAG	1 cut(s)	575
BsaJI	CCNNGG	2 cut(s)	105, 116
BsaWI	WCCGGW	1 cut(s)	306
Bse118I	RCCGGY	1 cut(s)	306
Bse1I	ACTGG	3 cut(s)	191, 344, 575
Bse3DI	GCAATG	1 cut(s)	456
BseDI	CCNNGG	2 cut(s)	105, 116
BseGI	GGATG	2 cut(s)	236, 377
BseMI	GCAATG	1 cut(s)	456
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	3 cut(s)	191, 344, 575
BsgI	GTGCAG	1 cut(s)	336
Bsh1236I	CGCG	1 cut(s)	101
BshFI	GGCC	1 cut(s)	114
BshTI	ACCGGT	1 cut(s)	306
BsiSI	CCGG	1 cut(s)	307
BslFI	GGGAC	3 cut(s)	236, 674, 688
BsmFI	GGGAC	3 cut(s)	236, 674, 688
BsnI	GGCC	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	25
Bsp68I	TCGCGA	1 cut(s)	101
BspACI	CCGC	1 cut(s)	486
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	1 cut(s)	22
BspFNI	CGCG	1 cut(s)	101
BspMI	ACCTGC	1 cut(s)	499
BspPI	GGATC	1 cut(s)	33
BsrDI	GCAATG	1 cut(s)	456
BsrFI	RCCGGY	1 cut(s)	306
BsrI	ACTGG	3 cut(s)	191, 344, 575
BssAI	RCCGGY	1 cut(s)	306
BssECI	CCNNGG	2 cut(s)	105, 116
BssMI	GATC	1 cut(s)	25
BssT1I	CCWWGG	1 cut(s)	105
Bst4CI	ACNGT	2 cut(s)	22, 160
Bst6I	CTCTTC	1 cut(s)	326
BstC8I	GCNNGC	1 cut(s)	512
BstDEI	CTNAG	1 cut(s)	9
BstF5I	GGATG	2 cut(s)	236, 377
BstFNI	CGCG	1 cut(s)	101
BstKTI	GATC	1 cut(s)	28
BstMBI	GATC	1 cut(s)	25
BstNSI	RCATGY	1 cut(s)	514
BstUI	CGCG	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
BsuRI	GGCC	1 cut(s)	114
BtsCI	GGATG	2 cut(s)	236, 377
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	3 cut(s)	18, 348, 582
BtuMI	TCGCGA	1 cut(s)	101
BveI	ACCTGC	1 cut(s)	499
Cac8I	GCNNGC	1 cut(s)	512
CaiI	CAGNNNCTG	1 cut(s)	176
Cfr10I	RCCGGY	1 cut(s)	306
Cfr13I	GGNCC	2 cut(s)	113, 394
Csp6I	GTAC	2 cut(s)	529, 598
CspAI	ACCGGT	1 cut(s)	306
CviAII	CATG	3 cut(s)	265, 511, 557
CviJI	RGCY	5 cut(s)	37, 114, 406, 467, 695
CviKI_1	RGCY	5 cut(s)	37, 114, 406, 467, 695
CviQI	GTAC	2 cut(s)	529, 598
DdeI	CTNAG	1 cut(s)	9
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	326
EarI	CTCTTC	1 cut(s)	326
Eco130I	CCWWGG	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	394
Eco57I	CTGAAG	1 cut(s)	601
EcoO109I	RGGNCCY	1 cut(s)	113
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	3 cut(s)	268, 514, 560
FaqI	GGGAC	3 cut(s)	236, 674, 688
FatI	CATG	3 cut(s)	264, 510, 556
FokI	GGATG	2 cut(s)	243, 384
FspBI	CTAG	1 cut(s)	570
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	1 cut(s)	307
Hin1II	CATG	3 cut(s)	268, 514, 560
HinfI	GANTC	3 cut(s)	15, 607, 622
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	3 cut(s)	80, 296, 545
Hpy166II	GTNNAC	2 cut(s)	88, 236
Hpy188I	TCNGA	2 cut(s)	129, 518
Hpy188III	TCNNGA	8 cut(s)	100, 148, 242, 280, 451, 592, 619, 626
Hpy8I	GTNNAC	2 cut(s)	88, 236
Hpy99I	CGWCG	1 cut(s)	655
HpyAV	CCTTC	5 cut(s)	104, 410, 457, 489, 560
HpyCH4III	ACNGT	2 cut(s)	22, 160
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	4 cut(s)	207, 353, 425, 494
HpyF3I	CTNAG	1 cut(s)	9
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	3 cut(s)	268, 514, 560
Kzo9I	GATC	1 cut(s)	25
LweI	GCATC	1 cut(s)	362
MaeI	CTAG	1 cut(s)	570
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	4 cut(s)	131, 335, 535, 577
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MboII	GAAGA	3 cut(s)	80, 293, 343
MfeI	CAATTG	1 cut(s)	255
MflI	RGATCY	1 cut(s)	25
MluCI	AATT	1 cut(s)	255
MnlI	CCTC	4 cut(s)	70, 126, 426, 500
MroXI	GAANNNNTTC	2 cut(s)	84, 297
MseI	TTAA	1 cut(s)	30
MspI	CCGG	1 cut(s)	307
MunI	CAATTG	1 cut(s)	255
MvnI	CGCG	1 cut(s)	101
NdeII	GATC	1 cut(s)	25
NlaIII	CATG	3 cut(s)	268, 514, 560
NmuCI	GTSAC	3 cut(s)	131, 535, 577
NruI	TCGCGA	1 cut(s)	101
NspI	RCATGY	1 cut(s)	514
PaeI	GCATGC	1 cut(s)	514
PaqCI	CACCTGC	1 cut(s)	499
PdmI	GAANNNNTTC	2 cut(s)	84, 297
PfeI	GAWTC	3 cut(s)	15, 607, 622
PflFI	GACNNNGTC	1 cut(s)	665
PinAI	ACCGGT	1 cut(s)	306
PspPI	GGNCC	2 cut(s)	113, 394
PsrI	GAACNNNNNNTAC	2 cut(s)	217, 249
PstNI	CAGNNNCTG	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	25
PsyI	GACNNNGTC	1 cut(s)	665
RruI	TCGCGA	1 cut(s)	101
RsaI	GTAC	2 cut(s)	530, 599
RsaNI	GTAC	2 cut(s)	529, 598
SaqAI	TTAA	1 cut(s)	30
Sau3AI	GATC	1 cut(s)	25
Sau96I	GGNCC	2 cut(s)	113, 394
SetI	ASST	8 cut(s)	54, 97, 218, 300, 402, 493, 552, 568
SfaNI	GCATC	1 cut(s)	362
SinI	GGWCC	1 cut(s)	394
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
SphI	GCATGC	1 cut(s)	514
Sse9I	AATT	1 cut(s)	255
SsiI	CCGC	1 cut(s)	486
SspI	AATATT	1 cut(s)	273
SspMI	CTAG	1 cut(s)	570
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	2 cut(s)	22, 160
TaiI	ACGT	1 cut(s)	300
TasI	AATT	1 cut(s)	255
TfiI	GAWTC	3 cut(s)	15, 607, 622
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	3 cut(s)	25, 355, 582
TseFI	GTSAC	3 cut(s)	131, 535, 577
Tsp45I	GTSAC	3 cut(s)	131, 535, 577
TspDTI	ATGAA	1 cut(s)	265
TspGWI	ACGGA	2 cut(s)	384, 435
TspRI	CASTG	3 cut(s)	25, 355, 582
Tth111I	GACNNNGTC	1 cut(s)	665
VpaK11BI	GGWCC	1 cut(s)	394
XceI	RCATGY	1 cut(s)	514
XcmI	CCANNNNNNNNNTGG	1 cut(s)	198
XmnI	GAANNNNTTC	2 cut(s)	84, 297
XspI	CTAG	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.