Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001087

Physical Location & Seq

Genomic Coordinates Reverse (-)

2474781 .. 2475656

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0035500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGTAAGAAACATCGGTCCTCTCGTGTGTCTCTCGGTCATGATCATGGATGCTATCGCCGGAATACTTGGCATCCAGGCTGAAATAGCCCAAAACAAGGTGAAGCATTTGAAGGCGTGGATTATCGAGTGCAGAGACCCGAGTTACCAAGCTTTCAAACTCGGTTTAGCTGCGGCTGTGCTTCTAGCGCTGGCACACACCATTGGGAACTTGCTCGGTGGGTGCATTTGCCTCTGGTCTAAGCAAGACTTCACCAAGGCCACAACAGCTAACAAGAAACTAGCTTTTGGGTTCCTAATTCTCTCATGGATAACTTTAGCACTGGGATTTTCGCTGTTAATCGTTGGAACAATGGCAAACTCAAAATCAAGAAAATCTTGCGCATTAGCACACGGTAGAGTACTATCAATAGGAGGAATCATCTGCTTCTTCCACGGATTGTTCACAGTGGCATACTACGTCTCAGCAAAGGCCACAATCAGAGAAGAAGAAAAGCGCAGGAACCCTACAAACCAAGCCAGCCATCCTCCGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016491 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071704 GO:0080132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5 FA_hydroxylase

Protein Analysis

178

Amino Acids

19.23

Weight (kDa)

9.7

Isoelectric Point (pI)

37.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1218	PF06749	58 - 146	2.4e-19	Protein of unknown function (DUF1218)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34770 AT4G20870 AT4G20870
fragaria_vesca	FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10760 FvH4_3g10760 FvH4_3g10760 FvH4_3g10780 FvH4_3g10780 FvH4_3g10780
malus_domestica	MD05G1268900.v1.1
prunus_persica	Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1
pyrus_communis	pycom05g25190 pycom10g20540
rosa_chinensis	RchiOBHm_Chr5g0017441 RchiOBHm_Chr5g0017481 RchiOBHm_Chr5g0017491 RchiOBHm_Chr5g0017501
rosa_laevigata	RLG00000032287 RLG00000032288 RLG00000032292 RLG00000032294
rosa_multiflora	Rmu_sc0007392.1_g000004 Rmu_sc0013973.1_g000006
rosa_roxburghii	Rroxscaffold_1G00059930 Rroxscaffold_1G00059950
rosa_rugosa	Rorug05G0035400 Rorug05G0035500 Rorug05G0035800 Rorug05G0035900 Rorug05G0036000 Rorug05G0036100 Rorug05G0036200 Rorug05G0036300 Rorug05G0036400 Rorug05G0036500 Rorug05G0036600
rosa_samantha	Rh5AG130200 Rh5AG130400 Rh5BG128400 Rh5BG128600 Rh5CG140900 Rh5DG130400 Rh5DG130600 Rh5DG130700 Rh5DG130800 Rh7BG398200
rosa_wichuraiana	Rw5G011240 Rw5G011250 Rw5G011260 Rw5G011270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	382
AciI	CCGC	1 cut(s)	173
AfaI	GTAC	1 cut(s)	402
AfeI	AGCGCT	1 cut(s)	189
AfiI	CCNNNNNNNGG	2 cut(s)	97, 529
AgsI	TTSAA	2 cut(s)	112, 157
AjnI	CCWGG	1 cut(s)	75
AluBI	AGCT	4 cut(s)	152, 170, 269, 284
AluI	AGCT	4 cut(s)	152, 170, 269, 284
Alw26I	GTCTC	3 cut(s)	35, 129, 466
Ama87I	CYCGRG	1 cut(s)	139
Aor51HI	AGCGCT	1 cut(s)	189
AoxI	GGCC	2 cut(s)	258, 471
ApeKI	GCWGC	1 cut(s)	170
AspLEI	GCGC	3 cut(s)	190, 383, 498
AspS9I	GGNCC	1 cut(s)	17
AsuHPI	GGTGA	2 cut(s)	112, 244
AvaI	CYCGRG	1 cut(s)	139
AvaII	GGWCC	1 cut(s)	17
BauI	CACGAG	1 cut(s)	23
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	1 cut(s)	531
BciT130I	CCWGG	1 cut(s)	77
BclI	TGATCA	1 cut(s)	42
BcoDI	GTCTC	3 cut(s)	35, 129, 466
BfaI	CTAG	2 cut(s)	185, 281
BfoI	RGCGCY	1 cut(s)	191
BisI	GCNGC	2 cut(s)	171, 174
BlsI	GCNGC	2 cut(s)	172, 175
BmcAI	AGTACT	1 cut(s)	402
Bme1390I	CCNGG	1 cut(s)	77
Bme18I	GGWCC	1 cut(s)	17
BmeT110I	CYCGRG	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	17
BmiI	GGNNCC	2 cut(s)	293, 503
BmrFI	CCNGG	1 cut(s)	77
BmrI	ACTGGG	1 cut(s)	332
BmsI	GCATC	2 cut(s)	40, 81
BmuI	ACTGGG	1 cut(s)	332
BsaI	GGTCTC	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	255, 433
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 529
Bse1I	ACTGG	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	77
BseDI	CCNNGG	2 cut(s)	255, 433
BseGI	GGATG	3 cut(s)	55, 72, 523
BseLI	CCNNNNNNNGG	2 cut(s)	97, 529
BseMII	CTCAG	1 cut(s)	477
BseNI	ACTGG	1 cut(s)	327
BseXI	GCAGC	1 cut(s)	157
BsgI	GTGCAG	1 cut(s)	151
BshFI	GGCC	2 cut(s)	260, 473
BsiHKCI	CYCGRG	1 cut(s)	139
BsiSI	CCGG	2 cut(s)	60, 530
BslI	CCNNNNNNNGG	2 cut(s)	97, 529
BsmAI	GTCTC	3 cut(s)	35, 129, 466
BsmBI	CGTCTC	1 cut(s)	466
BsnI	GGCC	2 cut(s)	260, 473
Bso31I	GGTCTC	1 cut(s)	129
BsoBI	CYCGRG	1 cut(s)	139
Bsp143I	GATC	1 cut(s)	42
BspACI	CCGC	1 cut(s)	173
BspANI	GGCC	2 cut(s)	260, 473
BspCNI	CTCAG	1 cut(s)	476
BspHI	TCATGA	1 cut(s)	39
BspLI	GGNNCC	2 cut(s)	293, 503
BspTNI	GGTCTC	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	327
BssECI	CCNNGG	2 cut(s)	255, 433
BssMI	GATC	1 cut(s)	42
BssSI	CACGAG	1 cut(s)	23
BssT1I	CCWWGG	1 cut(s)	255
Bst2BI	CACGAG	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	77
Bst4CI	ACNGT	2 cut(s)	395, 448
BstC8I	GCNNGC	2 cut(s)	192, 520
BstDEI	CTNAG	3 cut(s)	240, 463, 534
BstDSI	CCRYGG	1 cut(s)	433
BstF5I	GGATG	3 cut(s)	55, 72, 523
BstH2I	RGCGCY	1 cut(s)	191
BstHHI	GCGC	3 cut(s)	190, 383, 498
BstKTI	GATC	1 cut(s)	45
BstMAI	GTCTC	3 cut(s)	35, 129, 466
BstMBI	GATC	1 cut(s)	42
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 187, 266
BstNI	CCWGG	1 cut(s)	77
BstSCI	CCNGG	1 cut(s)	75
BstV1I	GCAGC	1 cut(s)	157
BsuRI	GGCC	2 cut(s)	260, 473
BtgI	CCRYGG	1 cut(s)	433
BtsCI	GGATG	3 cut(s)	55, 72, 523
BtsIMutI	CAGTG	2 cut(s)	320, 453
Cac8I	GCNNGC	2 cut(s)	192, 520
CciI	TCATGA	1 cut(s)	39
CfoI	GCGC	3 cut(s)	190, 383, 498
Cfr13I	GGNCC	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	401
CviAII	CATG	3 cut(s)	40, 46, 306
CviQI	GTAC	1 cut(s)	401
DdeI	CTNAG	3 cut(s)	240, 463, 534
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	255
Eco31I	GGTCTC	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	17
Eco47III	AGCGCT	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	75
EcoT14I	CCWWGG	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	255
Esp3I	CGTCTC	1 cut(s)	466
FaeI	CATG	3 cut(s)	43, 49, 309
FaiI	YATR	4 cut(s)	41, 47, 307, 454
FalI	AAGNNNNNCTT	4 cut(s)	233, 265, 361, 393
FatI	CATG	3 cut(s)	39, 45, 305
FbaI	TGATCA	1 cut(s)	42
Fnu4HI	GCNGC	2 cut(s)	171, 174
FokI	GGATG	3 cut(s)	59, 62, 510
Fsp4HI	GCNGC	2 cut(s)	171, 174
FspBI	CTAG	2 cut(s)	185, 281
FspI	TGCGCA	1 cut(s)	382
GlaI	GCGC	3 cut(s)	189, 382, 497
GluI	GCNGC	2 cut(s)	171, 174
HaeII	RGCGCY	1 cut(s)	191
HaeIII	GGCC	2 cut(s)	260, 473
HapII	CCGG	2 cut(s)	60, 530
HhaI	GCGC	3 cut(s)	190, 383, 498
Hin1II	CATG	3 cut(s)	43, 49, 309
Hin6I	GCGC	3 cut(s)	188, 381, 496
HinP1I	GCGC	3 cut(s)	188, 381, 496
HindIII	AAGCTT	1 cut(s)	150
HinfI	GANTC	1 cut(s)	417
HpaII	CCGG	2 cut(s)	60, 530
HphI	GGTGA	2 cut(s)	112, 244
Hpy166II	GTNNAC	1 cut(s)	444
Hpy188I	TCNGA	1 cut(s)	482
Hpy188III	TCNNGA	2 cut(s)	40, 369
Hpy8I	GTNNAC	1 cut(s)	444
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	2 cut(s)	395, 448
HpyCH4IV	ACGT	1 cut(s)	459
HpyCH4V	TGCA	2 cut(s)	132, 225
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 187, 266
HpyF3I	CTNAG	3 cut(s)	240, 463, 534
HpySE526I	ACGT	1 cut(s)	459
Hsp92II	CATG	3 cut(s)	43, 49, 309
HspAI	GCGC	3 cut(s)	188, 381, 496
Ksp22I	TGATCA	1 cut(s)	42
Kzo9I	GATC	1 cut(s)	42
LpnPI	CCDG	8 cut(s)	62, 73, 89, 176, 220, 308, 484, 532
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	2 cut(s)	40, 81
MaeI	CTAG	2 cut(s)	185, 281
MaeII	ACGT	1 cut(s)	459
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	1 cut(s)	44
MboI	GATC	1 cut(s)	42
MboII	GAAGA	3 cut(s)	421, 497, 500
MluCI	AATT	1 cut(s)	297
MmeI	TCCRAC	1 cut(s)	325
MnlI	CCTC	4 cut(s)	30, 242, 407, 537
MseI	TTAA	1 cut(s)	338
MslI	CAYNNNNRTG	1 cut(s)	44
MspI	CCGG	2 cut(s)	60, 530
MspR9I	CCNGG	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	77
MwoI	GCNNNNNNNGC	3 cut(s)	86, 187, 266
NdeII	GATC	1 cut(s)	42
NlaIII	CATG	3 cut(s)	43, 49, 309
NlaIV	GGNNCC	2 cut(s)	293, 503
NsbI	TGCGCA	1 cut(s)	382
PagI	TCATGA	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	1 cut(s)	21
PfeI	GAWTC	1 cut(s)	417
PkrI	GCNGC	2 cut(s)	172, 175
Psp6I	CCWGG	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	75
PspN4I	GGNNCC	2 cut(s)	293, 503
PspPI	GGNCC	1 cut(s)	17
RsaI	GTAC	1 cut(s)	402
RsaNI	GTAC	1 cut(s)	401
RseI	CAYNNNNRTG	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	338
SatI	GCNGC	2 cut(s)	171, 174
Sau3AI	GATC	1 cut(s)	42
Sau96I	GGNCC	1 cut(s)	17
ScaI	AGTACT	1 cut(s)	402
ScrFI	CCNGG	1 cut(s)	77
SetI	ASST	6 cut(s)	102, 154, 172, 271, 286, 462
SfaNI	GCATC	2 cut(s)	40, 81
SinI	GGWCC	1 cut(s)	17
SmiMI	CAYNNNNRTG	1 cut(s)	44
Sse9I	AATT	1 cut(s)	297
SsiI	CCGC	1 cut(s)	173
SspMI	CTAG	2 cut(s)	185, 281
StyD4I	CCNGG	1 cut(s)	75
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	2 cut(s)	395, 448
TaiI	ACGT	1 cut(s)	462
TaqI	TCGA	1 cut(s)	126
TaqII	GACCGA	2 cut(s)	5, 25
TasI	AATT	1 cut(s)	297
TatI	WGTACW	1 cut(s)	400
TauI	GCSGC	1 cut(s)	176
TfiI	GAWTC	1 cut(s)	417
Tru1I	TTAA	1 cut(s)	338
Tru9I	TTAA	1 cut(s)	338
TscAI	CASTG	2 cut(s)	327, 453
TseI	GCWGC	1 cut(s)	170
TspGWI	ACGGA	1 cut(s)	450
TspRI	CASTG	2 cut(s)	327, 453
VpaK11BI	GGWCC	1 cut(s)	17
XspI	CTAG	2 cut(s)	185, 281
ZrmI	AGTACT	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.