Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001087

Physical Location & Seq

Genomic Coordinates Forward (+)

12722592 .. 12732763

Gene Structure 10172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G011260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGTCGTCAAACCTTTTACCGTGGACTTGGATAAGCCTCTCGTCTTCCAGCTTACAATGAATGGGTTCGATCACCAACCTATTGTCAGCAAGGAAGGCCCGAGATTTTTTGCAAATGACTATTTGGAGCTCTTGACTCGCACAGCATGGTGGGTGATTCCACTTGTCTGGCTGCCTGTGGCATCCTGGTTAGTCTCCATGTCTTTTCGAATGGGGCTTACTTTAGCTCAGGTACCTTTAGCAGTGGTTGGTGGCATCTTTATTTGGACACTGTTGGAGTATGGTTTGCATCGCTTCCCTCTTCATATGAAATCAACAAGCTATTGGTTGGGCAACACCATTCATTATCGTTTTCATGGTTGCCATCACAAGCACCCTATGGATGGGATGCGCATTGTTTCCCCCCCTGCAGTGAGAGCTATTCTCTGTGTGCCGTTTTGGAATATGTTTAGGCTTTTATCACCTCCATCAGTTGCTCCGGCTTTGTTTGGAGGAACCTTACTGGGATATGTAGCATATGATGTCACTCATTACTACCTGCACCATGGGAAGCCATACAAAAGATTGACTCAAGATCTGAAGAAATATCACTTGAACCATCACTTCAGAAATCACAGTAAGGGATTCGGGATCACTTCCTCCTTTTGGGACAATGTTTTCCGAACAGTGCCTTCAACAAAAACTGCCGAGAAAATGGGTAACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016491 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071704 GO:0080132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5 FA_hydroxylase

Protein Analysis

235

Amino Acids

27.12

Weight (kDa)

9.78

Isoelectric Point (pI)

32.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	83 - 222	2.1e-15	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34770 AT4G20870 AT4G20870
fragaria_vesca	FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10760 FvH4_3g10760 FvH4_3g10760 FvH4_3g10780 FvH4_3g10780 FvH4_3g10780
malus_domestica	MD05G1268900.v1.1
prunus_persica	Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1
pyrus_communis	pycom05g25190 pycom10g20540
rosa_chinensis	RchiOBHm_Chr5g0017441 RchiOBHm_Chr5g0017481 RchiOBHm_Chr5g0017491 RchiOBHm_Chr5g0017501
rosa_laevigata	RLG00000032287 RLG00000032288 RLG00000032292 RLG00000032294
rosa_multiflora	Rmu_sc0007392.1_g000004 Rmu_sc0013973.1_g000006
rosa_roxburghii	Rroxscaffold_1G00059930 Rroxscaffold_1G00059950
rosa_rugosa	Rorug05G0035400 Rorug05G0035500 Rorug05G0035800 Rorug05G0035900 Rorug05G0036000 Rorug05G0036100 Rorug05G0036200 Rorug05G0036300 Rorug05G0036400 Rorug05G0036500 Rorug05G0036600
rosa_samantha	Rh5AG130200 Rh5AG130400 Rh5BG128400 Rh5BG128600 Rh5CG140900 Rh5DG130400 Rh5DG130600 Rh5DG130700 Rh5DG130800 Rh7BG398200
rosa_wichuraiana	Rw5G011240 Rw5G011250 Rw5G011260 Rw5G011270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	392
Acc36I	ACCTGC	1 cut(s)	546
Acc65I	GGTACC	1 cut(s)	232
AccB1I	GGYRCC	1 cut(s)	232
AclWI	GGATC	1 cut(s)	638
AcuI	CTGAAG	2 cut(s)	589, 599
AfaI	GTAC	1 cut(s)	234
AfiI	CCNNNNNNNGG	2 cut(s)	383, 645
AgsI	TTSAA	2 cut(s)	595, 675
AjnI	CCWGG	1 cut(s)	185
AluBI	AGCT	5 cut(s)	52, 130, 227, 321, 419
AluI	AGCT	5 cut(s)	52, 130, 227, 321, 419
Alw21I	GWGCWC	1 cut(s)	132
Alw26I	GTCTC	1 cut(s)	199
AlwI	GGATC	1 cut(s)	638
Ama87I	CYCGRG	1 cut(s)	100
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	172
Asp700I	GAANNNNTTC	1 cut(s)	65
Asp718I	GGTACC	1 cut(s)	232
AspLEI	GCGC	1 cut(s)	393
AspS9I	GGNCC	1 cut(s)	98
AsuHPI	GGTGA	3 cut(s)	65, 166, 453
AsuII	TTCGAA	1 cut(s)	208
AvaI	CYCGRG	1 cut(s)	100
BanI	GGYRCC	1 cut(s)	232
BanII	GRGCYC	1 cut(s)	132
BbsI	GAAGAC	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	159
BccI	CCATC	4 cut(s)	372, 377, 475, 606
BceAI	ACGGC	1 cut(s)	418
BciT130I	CCWGG	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	199
BfmI	CTRYAG	1 cut(s)	408
BfuAI	ACCTGC	1 cut(s)	546
BglII	AGATCT	1 cut(s)	574
BisI	GCNGC	1 cut(s)	173
BlsI	GCNGC	1 cut(s)	174
Bme1390I	CCNGG	1 cut(s)	187
BmeT110I	CYCGRG	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	2 cut(s)	234, 496
BmrFI	CCNGG	1 cut(s)	187
BmrI	ACTGGG	1 cut(s)	512
BmsI	GCATC	4 cut(s)	191, 264, 298, 378
BmuI	ACTGGG	1 cut(s)	512
BpiI	GAAGAC	1 cut(s)	37
BplI	GAGNNNNNCTC	2 cut(s)	408, 440
Bpu10I	CCTNAGC	1 cut(s)	228
Bpu14I	TTCGAA	1 cut(s)	208
BpuEI	CTTGAG	1 cut(s)	555
BsaJI	CCNNGG	2 cut(s)	21, 544
Bsc4I	CCNNNNNNNGG	2 cut(s)	383, 645
Bse1I	ACTGG	2 cut(s)	507, 703
BseBI	CCWGG	1 cut(s)	187
BseDI	CCNNGG	2 cut(s)	21, 544
BseGI	GGATG	3 cut(s)	182, 388, 393
BseLI	CCNNNNNNNGG	2 cut(s)	383, 645
BseMII	CTCAG	1 cut(s)	242
BseNI	ACTGG	2 cut(s)	507, 703
BseXI	GCAGC	1 cut(s)	159
BsgI	GTGCAG	1 cut(s)	524
BshFI	GGCC	1 cut(s)	99
BshNI	GGYRCC	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	132
BsiHKCI	CYCGRG	1 cut(s)	100
BsiSI	CCGG	1 cut(s)	479
BslFI	GGGAC	1 cut(s)	662
BslI	CCNNNNNNNGG	2 cut(s)	383, 645
BsmAI	GTCTC	1 cut(s)	199
BsmFI	GGGAC	1 cut(s)	662
BsnI	GGCC	1 cut(s)	99
BsoBI	CYCGRG	1 cut(s)	100
Bsp119I	TTCGAA	1 cut(s)	208
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	3 cut(s)	70, 574, 630
Bsp19I	CCATGG	1 cut(s)	544
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	1 cut(s)	241
BspLI	GGNNCC	2 cut(s)	234, 496
BspMAI	CTGCAG	1 cut(s)	412
BspMI	ACCTGC	1 cut(s)	546
BspPI	GGATC	1 cut(s)	638
BspT104I	TTCGAA	1 cut(s)	208
BspT107I	GGYRCC	1 cut(s)	232
BsrI	ACTGG	2 cut(s)	507, 703
BssECI	CCNNGG	2 cut(s)	21, 544
BssMI	GATC	3 cut(s)	70, 574, 630
BssT1I	CCWWGG	1 cut(s)	544
Bst2UI	CCWGG	1 cut(s)	187
Bst4CI	ACNGT	4 cut(s)	22, 273, 617, 667
Bst6I	CTCTTC	1 cut(s)	306
BstBI	TTCGAA	1 cut(s)	208
BstDEI	CTNAG	1 cut(s)	228
BstDSI	CCRYGG	2 cut(s)	21, 544
BstEII	GGTNACC	1 cut(s)	698
BstF5I	GGATG	3 cut(s)	182, 388, 393
BstHHI	GCGC	1 cut(s)	393
BstKTI	GATC	3 cut(s)	73, 577, 633
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	3 cut(s)	70, 574, 630
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 416
BstNI	CCWGG	1 cut(s)	187
BstPI	GGTNACC	1 cut(s)	698
BstSCI	CCNGG	1 cut(s)	185
BstSFI	CTRYAG	1 cut(s)	408
BstV1I	GCAGC	1 cut(s)	159
BstV2I	GAAGAC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	574
BstXI	CCANNNNNNTGG	1 cut(s)	168
BstYI	RGATCY	1 cut(s)	574
BsuRI	GGCC	1 cut(s)	99
BtgI	CCRYGG	2 cut(s)	21, 544
BtgZI	GCGATG	1 cut(s)	275
BtsCI	GGATG	3 cut(s)	182, 388, 393
BtsI	GCAGTG	2 cut(s)	249, 417
BtsIMutI	CAGTG	4 cut(s)	249, 269, 417, 672
BveI	ACCTGC	1 cut(s)	546
CfoI	GCGC	1 cut(s)	393
Cfr13I	GGNCC	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	233
CviAII	CATG	4 cut(s)	147, 199, 356, 545
CviQI	GTAC	1 cut(s)	233
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	3 cut(s)	72, 576, 632
DpnII	GATC	3 cut(s)	70, 574, 630
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Ecl136II	GAGCTC	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	544
Eco24I	GRGCYC	1 cut(s)	132
Eco53kI	GAGCTC	1 cut(s)	130
Eco57I	CTGAAG	2 cut(s)	589, 599
Eco88I	CYCGRG	1 cut(s)	100
Eco91I	GGTNACC	1 cut(s)	698
EcoICRI	GAGCTC	1 cut(s)	130
EcoO65I	GGTNACC	1 cut(s)	698
EcoRII	CCWGG	1 cut(s)	185
EcoT14I	CCWWGG	1 cut(s)	544
EcoT38I	GRGCYC	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	544
FaeI	CATG	4 cut(s)	150, 202, 359, 548
FaqI	GGGAC	1 cut(s)	662
FatI	CATG	4 cut(s)	146, 198, 355, 544
FauNDI	CATATG	2 cut(s)	306, 517
Fnu4HI	GCNGC	1 cut(s)	173
FokI	GGATG	3 cut(s)	169, 395, 400
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	1 cut(s)	173
FspAI	RTGCGCAY	1 cut(s)	392
FspI	TGCGCA	1 cut(s)	392
GlaI	GCGC	1 cut(s)	392
GluI	GCNGC	1 cut(s)	173
HaeIII	GGCC	1 cut(s)	99
HapII	CCGG	1 cut(s)	479
HhaI	GCGC	1 cut(s)	393
Hin1II	CATG	4 cut(s)	150, 202, 359, 548
Hin6I	GCGC	1 cut(s)	391
HinP1I	GCGC	1 cut(s)	391
HinfI	GANTC	4 cut(s)	136, 157, 568, 624
HpaII	CCGG	1 cut(s)	479
HphI	GGTGA	3 cut(s)	65, 166, 453
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	3 cut(s)	579, 608, 662
Hpy188III	TCNNGA	3 cut(s)	133, 572, 628
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	2 cut(s)	89, 681
HpyCH4III	ACNGT	4 cut(s)	22, 273, 617, 667
HpyCH4V	TGCA	4 cut(s)	113, 289, 410, 541
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 416
HpyF3I	CTNAG	1 cut(s)	228
Hsp92II	CATG	4 cut(s)	150, 202, 359, 548
HspAI	GCGC	1 cut(s)	391
KpnI	GGTACC	1 cut(s)	236
Kzo9I	GATC	3 cut(s)	70, 574, 630
LmnI	GCTCC	2 cut(s)	127, 481
Lsp1109I	GCAGC	1 cut(s)	159
LweI	GCATC	4 cut(s)	191, 264, 298, 378
MaeIII	GTNAC	2 cut(s)	523, 698
MalI	GATC	3 cut(s)	72, 576, 632
MboI	GATC	3 cut(s)	70, 574, 630
MboII	GAAGA	3 cut(s)	37, 293, 592
MflI	RGATCY	1 cut(s)	574
MhlI	GDGCHC	1 cut(s)	132
MlyI	GAGTC	2 cut(s)	130, 562
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	5 cut(s)	48, 309, 474, 485, 649
MroXI	GAANNNNTTC	1 cut(s)	65
MspI	CCGG	1 cut(s)	479
MspR9I	CCNGG	1 cut(s)	187
MvaI	CCWGG	1 cut(s)	187
MwoI	GCNNNNNNNGC	2 cut(s)	96, 416
NcoI	CCATGG	1 cut(s)	544
NdeI	CATATG	2 cut(s)	306, 517
NdeII	GATC	3 cut(s)	70, 574, 630
NlaIII	CATG	4 cut(s)	150, 202, 359, 548
NlaIV	GGNNCC	2 cut(s)	234, 496
NmuCI	GTSAC	1 cut(s)	523
NsbI	TGCGCA	1 cut(s)	392
NspV	TTCGAA	1 cut(s)	208
PdmI	GAANNNNTTC	1 cut(s)	65
PfeI	GAWTC	2 cut(s)	157, 624
PkrI	GCNGC	1 cut(s)	174
PleI	GAGTC	2 cut(s)	130, 562
PpsI	GAGTC	2 cut(s)	130, 562
Psp124BI	GAGCTC	1 cut(s)	132
Psp6I	CCWGG	1 cut(s)	185
PspEI	GGTNACC	1 cut(s)	698
PspGI	CCWGG	1 cut(s)	185
PspN4I	GGNNCC	2 cut(s)	234, 496
PspPI	GGNCC	1 cut(s)	98
PstI	CTGCAG	1 cut(s)	412
PsuI	RGATCY	1 cut(s)	574
RsaI	GTAC	1 cut(s)	234
RsaNI	GTAC	1 cut(s)	233
SacI	GAGCTC	1 cut(s)	132
SatI	GCNGC	1 cut(s)	173
Sau3AI	GATC	3 cut(s)	70, 574, 630
Sau96I	GGNCC	1 cut(s)	98
SchI	GAGTC	2 cut(s)	130, 562
ScrFI	CCNGG	1 cut(s)	187
SduI	GDGCHC	1 cut(s)	132
SfaNI	GCATC	4 cut(s)	191, 264, 298, 378
SfcI	CTRYAG	1 cut(s)	408
SfuI	TTCGAA	1 cut(s)	208
SmlI	CTYRAG	1 cut(s)	570
SmoI	CTYRAG	1 cut(s)	570
SstI	GAGCTC	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	185
StyI	CCWWGG	1 cut(s)	544
TaaI	ACNGT	4 cut(s)	22, 273, 617, 667
TaqI	TCGA	2 cut(s)	69, 208
TfiI	GAWTC	2 cut(s)	157, 624
TscAI	CASTG	4 cut(s)	249, 276, 417, 672
TseFI	GTSAC	1 cut(s)	523
TseI	GCWGC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	523
TspDTI	ATGAA	5 cut(s)	74, 293, 323, 332, 344
TspRI	CASTG	4 cut(s)	249, 276, 417, 672
XmnI	GAANNNNTTC	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.