Rorug05G0036200

Belongs to the sterol desaturase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
2550480 .. 2551134
655 bp
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UTR
Exon/CDS
Intron
Rorug05G0036200.1

Sequence Viewer

Length: 294 bp
ATGGATGAAATGGGTACATTAAAGAAGAACACATTTGGGGATGTGAAAGGAATGCTTGAAATGTTGGAGGCCTCAAACCTAGCTTTAGAAGGTGAAAATATCCTAGAGCAGGCTAAAGCTTTCTTAATGGTCACTCTTAGAGAGACCAATACAAGGTGTGATGATATAGACAATTGCATTTCCAAGCATGTGACTTATGCCCTGGAGCTTCCATCACAAAGGAGAGTTCAGTGGTTTAATGTGAAATGGCACATCAAATCCTACGAGAAAGACCATACTGATTGTTTCTGTTGA

Protein Analysis

97

Amino Acids

11.29

Weight (kDa)

5.29

Isoelectric Point (pI)

33.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 2 - 68 4.7e-10 Terpene synthase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 16
AfiI CCNNNNNNNGG 2 cut(s) 109, 153
AgsI TTSAA 1 cut(s) 59
AjnI CCWGG 1 cut(s) 201
AluBI AGCT 3 cut(s) 83, 119, 208
AluI AGCT 3 cut(s) 83, 119, 208
Alw26I GTCTC 1 cut(s) 137
AoxI GGCC 1 cut(s) 69
AsuHPI GGTGA 1 cut(s) 104
BccI CCATC 1 cut(s) 220
BciT130I CCWGG 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 2 cut(s) 80, 104
Bme1390I CCNGG 1 cut(s) 203
BmrFI CCNGG 1 cut(s) 203
BpmI CTGGAG 1 cut(s) 224
BsaI GGTCTC 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 201
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 153
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 2 cut(s) 10, 46
BseLI CCNNNNNNNGG 2 cut(s) 109, 153
BshFI GGCC 1 cut(s) 71
BslI CCNNNNNNNGG 2 cut(s) 109, 153
BsmAI GTCTC 1 cut(s) 137
BsmI GAATGC 1 cut(s) 57
BsnI GGCC 1 cut(s) 71
Bso31I GGTCTC 1 cut(s) 137
BspANI GGCC 1 cut(s) 71
BspTNI GGTCTC 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 201
Bst2UI CCWGG 1 cut(s) 203
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 1 cut(s) 137
BstENI CCTNNNNNAGG 1 cut(s) 107
BstF5I GGATG 2 cut(s) 10, 46
BstMAI GTCTC 1 cut(s) 137
BstNI CCWGG 1 cut(s) 203
BstNSI RCATGY 1 cut(s) 191
BstSCI CCNGG 1 cut(s) 201
BsuRI GGCC 1 cut(s) 71
BtsCI GGATG 2 cut(s) 10, 46
BtsIMutI CAGTG 1 cut(s) 236
Cac8I GCNNGC 1 cut(s) 111
Csp6I GTAC 1 cut(s) 15
CviAII CATG 1 cut(s) 188
CviJI RGCY 5 cut(s) 71, 83, 113, 119, 208
CviKI_1 RGCY 5 cut(s) 71, 83, 113, 119, 208
CviQI GTAC 1 cut(s) 15
DdeI CTNAG 1 cut(s) 137
Eco147I AGGCCT 1 cut(s) 71
Eco31I GGTCTC 1 cut(s) 137
EcoNI CCTNNNNNAGG 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 201
FaeI CATG 1 cut(s) 191
FaiI YATR 4 cut(s) 167, 189, 198, 276
FalI AAGNNNNNCTT 2 cut(s) 39, 71
FatI CATG 1 cut(s) 187
FokI GGATG 2 cut(s) 17, 53
FspBI CTAG 2 cut(s) 80, 104
GsuI CTGGAG 1 cut(s) 224
HaeIII GGCC 1 cut(s) 71
Hin1II CATG 1 cut(s) 191
HindIII AAGCTT 1 cut(s) 117
HphI GGTGA 1 cut(s) 104
HpyAV CCTTC 1 cut(s) 83
HpyCH4V TGCA 1 cut(s) 177
HpyF3I CTNAG 1 cut(s) 137
Hsp92II CATG 1 cut(s) 191
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 3 cut(s) 95, 188, 215
MaeI CTAG 2 cut(s) 80, 104
MaeIII GTNAC 2 cut(s) 130, 190
MboII GAAGA 1 cut(s) 37
MfeI CAATTG 1 cut(s) 172
MluCI AATT 1 cut(s) 172
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 2 cut(s) 61, 82
MseI TTAA 3 cut(s) 20, 125, 237
MspR9I CCNGG 1 cut(s) 203
MunI CAATTG 1 cut(s) 172
Mva1269I GAATGC 1 cut(s) 57
MvaI CCWGG 1 cut(s) 203
NlaIII CATG 1 cut(s) 191
NmuCI GTSAC 2 cut(s) 130, 190
NspI RCATGY 1 cut(s) 191
PceI AGGCCT 1 cut(s) 71
PctI GAATGC 1 cut(s) 57
Psp6I CCWGG 1 cut(s) 201
PspGI CCWGG 1 cut(s) 201
RsaI GTAC 1 cut(s) 16
RsaNI GTAC 1 cut(s) 15
SaqAI TTAA 3 cut(s) 20, 125, 237
ScrFI CCNGG 1 cut(s) 203
SetI ASST 6 cut(s) 81, 85, 94, 121, 158, 210
Sse9I AATT 1 cut(s) 172
SseBI AGGCCT 1 cut(s) 71
SspMI CTAG 2 cut(s) 80, 104
StuI AGGCCT 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 201
TasI AATT 1 cut(s) 172
Tru1I TTAA 3 cut(s) 20, 125, 237
Tru9I TTAA 3 cut(s) 20, 125, 237
TscAI CASTG 1 cut(s) 236
TseFI GTSAC 2 cut(s) 130, 190
Tsp45I GTSAC 2 cut(s) 130, 190
TspDTI ATGAA 1 cut(s) 21
TspRI CASTG 1 cut(s) 236
XagI CCTNNNNNAGG 1 cut(s) 107
XceI RCATGY 1 cut(s) 191
XspI CTAG 2 cut(s) 80, 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.