Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001087

Physical Location & Seq

Genomic Coordinates Forward (+)

12299306 .. 12302561

Gene Structure 3256 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG128600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGTTGCTCAGGACTTCCAAGTTGATTTGAATAAAGCCCTTGTATTCCAGGTTGGCCATCTTGGAGAATCATATCAAGAGTGGGTTCACCAGCCTATTGTCTGCACGGAAGGCCCTCGATTTTTTGAAAATGAATTTTGGGAGTTCTTGACCCGCACTGTGTGGTGGGCAGTTCCTACCATATGGCTTCCAGTTGTGTGTTACTTTATCTCCAAATCCGTACGAATGGGCCATACCTTTCCTGAAATCGTTGTGATGGTTCTTTTTGGCATCTTGGTGTGGACATTGCTTGAATATATGTTGCATCGCTTCCTTTTCCACATTGAAACAAAGACCTACTGGTGGAACACCATACATTATCTTCTCCATGGCTGCCATCACAAACACCCAATGGATGGTTTGCGACTTGTTTTTCCTCCTACTGCAACAGCTATTTTATGTTTTCCGTTCTATAACTTGGTTAAGTTGATGTCATCCCCTTCTGTTGCTCCTGCTTTGTTTGGCGGTGGTTTATTGGGATATGTCATGTATGATGTTACCCATTATTACCTTCATCATGGTCAGCCATCCAGTAAGGTACCCAAAGATCTTAAGAAATACCACTTGAATCATCACTTCAGGATTCAGGACAAAGGCTTTGGAATAACTTCAAGTCTATGGGACAGGGTGTTTGGAACACTTCCTCAAACCAAAGCAGCTAAGAAAACTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

237

Amino Acids

27.74

Weight (kDa)

8.98

Isoelectric Point (pI)

48.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	87 - 226	4.3e-17	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34770 AT4G20870 AT4G20870
fragaria_vesca	FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10760 FvH4_3g10760 FvH4_3g10760 FvH4_3g10780 FvH4_3g10780 FvH4_3g10780
malus_domestica	MD05G1268900.v1.1
prunus_persica	Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1
pyrus_communis	pycom05g25190 pycom10g20540
rosa_chinensis	RchiOBHm_Chr5g0017441 RchiOBHm_Chr5g0017481 RchiOBHm_Chr5g0017491 RchiOBHm_Chr5g0017501
rosa_laevigata	RLG00000032287 RLG00000032288 RLG00000032292 RLG00000032294
rosa_multiflora	Rmu_sc0007392.1_g000004 Rmu_sc0013973.1_g000006
rosa_roxburghii	Rroxscaffold_1G00059930 Rroxscaffold_1G00059950
rosa_rugosa	Rorug05G0035400 Rorug05G0035500 Rorug05G0035800 Rorug05G0035900 Rorug05G0036000 Rorug05G0036100 Rorug05G0036200 Rorug05G0036300 Rorug05G0036400 Rorug05G0036500 Rorug05G0036600
rosa_samantha	Rh5AG130200 Rh5AG130400 Rh5BG128400 Rh5BG128600 Rh5CG140900 Rh5DG130400 Rh5DG130600 Rh5DG130700 Rh5DG130800 Rh7BG398200
rosa_wichuraiana	Rw5G011240 Rw5G011250 Rw5G011260 Rw5G011270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	577
AccB1I	GGYRCC	1 cut(s)	577
AccB7I	CCANNNNNTGG	1 cut(s)	395
AciI	CCGC	2 cut(s)	154, 504
AcoI	YGGCCR	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	134
AcuI	CTGAAG	1 cut(s)	601
AdeI	CACNNNGTG	1 cut(s)	162
AfaI	GTAC	2 cut(s)	222, 579
AfiI	CCNNNNNNNGG	2 cut(s)	342, 395
AflII	CTTAAG	1 cut(s)	590
AgsI	TTSAA	6 cut(s)	31, 128, 293, 326, 607, 651
AjnI	CCWGG	1 cut(s)	48
AluBI	AGCT	2 cut(s)	431, 698
AluI	AGCT	2 cut(s)	431, 698
AoxI	GGCC	3 cut(s)	55, 112, 229
ApeKI	GCWGC	2 cut(s)	372, 695
ApoI	RAATTY	1 cut(s)	134
ArsI	GACNNNNNNTTYG	4 cut(s)	620, 652, 653, 685
Asp700I	GAANNNNTTC	1 cut(s)	646
Asp718I	GGTACC	1 cut(s)	577
AspS9I	GGNCC	2 cut(s)	113, 229
AsuHPI	GGTGA	1 cut(s)	80
BalI	TGGCCA	1 cut(s)	57
BanI	GGYRCC	1 cut(s)	577
BbvI	GCAGC	2 cut(s)	359, 707
BccI	CCATC	5 cut(s)	66, 250, 384, 389, 574
BciT130I	CCWGG	1 cut(s)	50
BfaI	CTAG	1 cut(s)	708
BfrI	CTTAAG	1 cut(s)	590
BglII	AGATCT	1 cut(s)	586
BisI	GCNGC	2 cut(s)	373, 696
BlsI	GCNGC	2 cut(s)	374, 697
Bme1390I	CCNGG	1 cut(s)	50
BmgT120I	GGNCC	2 cut(s)	113, 229
BmiI	GGNNCC	1 cut(s)	579
BmrFI	CCNGG	1 cut(s)	50
BmsI	GCATC	2 cut(s)	279, 313
Bpu10I	CCTNAGC	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	367
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	2 cut(s)	342, 395
Bse1I	ACTGG	3 cut(s)	191, 344, 570
Bse3DI	GCAATG	1 cut(s)	284
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	367
BseGI	GGATG	3 cut(s)	400, 473, 566
BseLI	CCNNNNNNNGG	2 cut(s)	342, 395
BseMI	GCAATG	1 cut(s)	284
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	3 cut(s)	191, 344, 570
BseXI	GCAGC	2 cut(s)	359, 707
BsgI	GTGCAG	1 cut(s)	88
BshFI	GGCC	3 cut(s)	57, 114, 231
BshNI	GGYRCC	1 cut(s)	577
BsiWI	CGTACG	1 cut(s)	220
BslFI	GGGAC	1 cut(s)	674
BslI	CCNNNNNNNGG	2 cut(s)	342, 395
BsmFI	GGGAC	1 cut(s)	674
BsnI	GGCC	3 cut(s)	57, 114, 231
Bsp143I	GATC	1 cut(s)	586
Bsp19I	CCATGG	1 cut(s)	367
BspACI	CCGC	2 cut(s)	154, 504
BspANI	GGCC	3 cut(s)	57, 114, 231
BspCNI	CTCAG	1 cut(s)	22
BspLI	GGNNCC	1 cut(s)	579
BspT107I	GGYRCC	1 cut(s)	577
BspTI	CTTAAG	1 cut(s)	590
BsrDI	GCAATG	1 cut(s)	284
BsrI	ACTGG	3 cut(s)	191, 344, 570
BssECI	CCNNGG	1 cut(s)	367
BssMI	GATC	1 cut(s)	586
BssT1I	CCWWGG	1 cut(s)	367
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	1 cut(s)	160
BstAFI	CTTAAG	1 cut(s)	590
BstDEI	CTNAG	2 cut(s)	9, 699
BstDSI	CCRYGG	1 cut(s)	367
BstF5I	GGATG	3 cut(s)	400, 473, 566
BstKTI	GATC	1 cut(s)	589
BstMBI	GATC	1 cut(s)	586
BstMWI	GCNNNNNNNGC	1 cut(s)	111
BstNI	CCWGG	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	48
BstV1I	GCAGC	2 cut(s)	359, 707
BstX2I	RGATCY	1 cut(s)	586
BstYI	RGATCY	1 cut(s)	586
BsuRI	GGCC	3 cut(s)	57, 114, 231
BtgI	CCRYGG	1 cut(s)	367
BtgZI	GCGATG	1 cut(s)	290
BtsCI	GGATG	3 cut(s)	400, 473, 566
BtsIMutI	CAGTG	1 cut(s)	156
Cfr13I	GGNCC	2 cut(s)	113, 229
Csp6I	GTAC	2 cut(s)	221, 578
CviAII	CATG	3 cut(s)	368, 526, 557
CviQI	GTAC	2 cut(s)	221, 578
DdeI	CTNAG	2 cut(s)	9, 699
DpnI	GATC	1 cut(s)	588
DpnII	GATC	1 cut(s)	586
DraIII	CACNNNGTG	1 cut(s)	162
EaeI	YGGCCR	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	367
Eco57I	CTGAAG	1 cut(s)	601
EcoO109I	RGGNCCY	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	48
EcoT14I	CCWWGG	1 cut(s)	367
ErhI	CCWWGG	1 cut(s)	367
FaeI	CATG	3 cut(s)	371, 529, 560
FaqI	GGGAC	1 cut(s)	674
FatI	CATG	3 cut(s)	367, 525, 556
FauI	CCCGC	1 cut(s)	161
FauNDI	CATATG	1 cut(s)	182
Fnu4HI	GCNGC	2 cut(s)	373, 696
FokI	GGATG	3 cut(s)	407, 460, 553
Fsp4HI	GCNGC	2 cut(s)	373, 696
FspBI	CTAG	1 cut(s)	708
GluI	GCNGC	2 cut(s)	373, 696
HaeIII	GGCC	3 cut(s)	57, 114, 231
Hin1II	CATG	3 cut(s)	371, 529, 560
HinfI	GANTC	3 cut(s)	68, 607, 622
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	2 cut(s)	88, 282
Hpy188III	TCNNGA	6 cut(s)	11, 77, 148, 242, 619, 626
Hpy8I	GTNNAC	2 cut(s)	88, 282
HpyAV	CCTTC	3 cut(s)	104, 489, 560
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4V	TGCA	3 cut(s)	105, 304, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	111
HpyF3I	CTNAG	2 cut(s)	9, 699
Hsp92II	CATG	3 cut(s)	371, 529, 560
KpnI	GGTACC	1 cut(s)	581
Kzo9I	GATC	1 cut(s)	586
LmnI	GCTCC	1 cut(s)	493
Lsp1109I	GCAGC	2 cut(s)	359, 707
LweI	GCATC	2 cut(s)	279, 313
MaeI	CTAG	1 cut(s)	708
MaeIII	GTNAC	2 cut(s)	200, 535
MalI	GATC	1 cut(s)	588
MboI	GATC	1 cut(s)	586
MboII	GAAGA	1 cut(s)	353
MflI	RGATCY	1 cut(s)	586
MlsI	TGGCCA	1 cut(s)	57
MluCI	AATT	1 cut(s)	134
MluNI	TGGCCA	1 cut(s)	57
MnlI	CCTC	3 cut(s)	126, 426, 693
Mox20I	TGGCCA	1 cut(s)	57
MroXI	GAANNNNTTC	1 cut(s)	646
MscI	TGGCCA	1 cut(s)	57
MseI	TTAA	2 cut(s)	462, 591
MslI	CAYNNNNRTG	1 cut(s)	275
Msp20I	TGGCCA	1 cut(s)	57
MspCI	CTTAAG	1 cut(s)	590
MspR9I	CCNGG	1 cut(s)	50
MvaI	CCWGG	1 cut(s)	50
MwoI	GCNNNNNNNGC	1 cut(s)	111
NcoI	CCATGG	1 cut(s)	367
NdeI	CATATG	1 cut(s)	182
NdeII	GATC	1 cut(s)	586
NlaIII	CATG	3 cut(s)	371, 529, 560
NlaIV	GGNNCC	1 cut(s)	579
PdmI	GAANNNNTTC	1 cut(s)	646
PfeI	GAWTC	3 cut(s)	68, 607, 622
Pfl23II	CGTACG	1 cut(s)	220
PflMI	CCANNNNNTGG	1 cut(s)	395
PkrI	GCNGC	2 cut(s)	374, 697
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PspLI	CGTACG	1 cut(s)	220
PspN4I	GGNNCC	1 cut(s)	579
PspPI	GGNCC	2 cut(s)	113, 229
PsuI	RGATCY	1 cut(s)	586
RsaI	GTAC	2 cut(s)	222, 579
RsaNI	GTAC	2 cut(s)	221, 578
RseI	CAYNNNNRTG	1 cut(s)	275
SaqAI	TTAA	2 cut(s)	462, 591
SatI	GCNGC	2 cut(s)	373, 696
Sau3AI	GATC	1 cut(s)	586
Sau96I	GGNCC	2 cut(s)	113, 229
ScrFI	CCNGG	1 cut(s)	50
SetI	ASST	7 cut(s)	54, 239, 338, 433, 552, 579, 700
SfaNI	GCATC	2 cut(s)	279, 313
SmiMI	CAYNNNNRTG	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
Sse9I	AATT	1 cut(s)	134
SsiI	CCGC	2 cut(s)	154, 504
SspMI	CTAG	1 cut(s)	708
StyD4I	CCNGG	1 cut(s)	48
StyI	CCWWGG	1 cut(s)	367
TaaI	ACNGT	1 cut(s)	160
TaqI	TCGA	1 cut(s)	118
TasI	AATT	1 cut(s)	134
TfiI	GAWTC	3 cut(s)	68, 607, 622
Tru1I	TTAA	2 cut(s)	462, 591
Tru9I	TTAA	2 cut(s)	462, 591
TscAI	CASTG	1 cut(s)	163
TseI	GCWGC	2 cut(s)	372, 695
TspDTI	ATGAA	2 cut(s)	147, 542
TspGWI	ACGGA	3 cut(s)	122, 208, 435
TspRI	CASTG	1 cut(s)	163
Van91I	CCANNNNNTGG	1 cut(s)	395
Vha464I	CTTAAG	1 cut(s)	590
XapI	RAATTY	1 cut(s)	134
XmnI	GAANNNNTTC	1 cut(s)	646
XspI	CTAG	1 cut(s)	708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.