pycom05g25190

Belongs to the sterol desaturase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
26663139 .. 26664153
1015 bp
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UTR
Exon/CDS
Intron
pycom05g25190.4

Sequence Viewer

Length: 489 bp
ATGGGTCATACATTCCCTGAAGTTGCTCTGACAGTTGTTGCTGGGATTTTTGTCTGGACATTGATGGAATACACGTTGCACCGCTTTCTTTTCCACATTGAAACAAAGAGCTACTGGGGGAACACTTTACATTATCTTCTTCACGGCTGCCACCATAAGCACCCAATGGACGGCCTGCGACTTGTTTTCCCTCCTGCTGCGACAGCTATTTTATGCATTCCATTCTGGAACTTGGTGAAGCTGATGTCTTCTCCTACTTTTGCTCCTGCTTTGTTTGGAGGCGGTTTATTGGGCTATGTGATGTATGATTGCACCCATTACTATCTTCATCACGGTCAGCCAACAAGTGAGGTACCCCGAAATCTGAAGAGATACCACCTGAATCATCACTTCAGGATCCAAGATAAGGGCTTCGGAATAACTTCAAGCCTATGGGACAGGGTGTTCGGAACACTTCCACAACCGAAAGCAGCCAAGAAAGTTTGTTAG

Protein Analysis

163

Amino Acids

18.57

Weight (kDa)

9.25

Isoelectric Point (pI)

53.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 352
AccB1I GGYRCC 1 cut(s) 352
AciI CCGC 2 cut(s) 82, 282
AclWI GGATC 2 cut(s) 391, 404
AcuI CTGAAG 3 cut(s) 39, 376, 386
AfaI GTAC 1 cut(s) 354
AfiI CCNNNNNNNGG 2 cut(s) 170, 406
AflIII ACRYGT 1 cut(s) 72
AgsI TTSAA 2 cut(s) 101, 426
AloI GAACNNNNNNTCC 2 cut(s) 428, 460
AluBI AGCT 3 cut(s) 111, 206, 241
AluI AGCT 3 cut(s) 111, 206, 241
AlwI GGATC 2 cut(s) 391, 404
AoxI GGCC 1 cut(s) 172
ApeKI GCWGC 3 cut(s) 147, 197, 470
ArsI GACNNNNNNTTYG 2 cut(s) 428, 460
Asp700I GAANNNNTTC 1 cut(s) 421
Asp718I GGTACC 1 cut(s) 352
AsuHPI GGTGA 1 cut(s) 247
BamHI GGATCC 1 cut(s) 396
BanI GGYRCC 1 cut(s) 352
BbsI GAAGAC 1 cut(s) 240
BbvI GCAGC 3 cut(s) 134, 184, 482
BccI CCATC 1 cut(s) 58
BceAI ACGGC 2 cut(s) 160, 187
BisI GCNGC 3 cut(s) 148, 198, 471
BlsI GCNGC 3 cut(s) 149, 199, 472
BmiI GGNNCC 2 cut(s) 354, 398
BmrI ACTGGG 1 cut(s) 124
BmuI ACTGGG 1 cut(s) 124
BpiI GAAGAC 1 cut(s) 240
BsaXI ACNNNNNCTCC 2 cut(s) 247, 277
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 406
Bse1I ACTGG 1 cut(s) 119
BseLI CCNNNNNNNGG 2 cut(s) 170, 406
BseNI ACTGG 1 cut(s) 119
BseXI GCAGC 3 cut(s) 134, 184, 482
BseYI CCCAGC 1 cut(s) 41
BshFI GGCC 1 cut(s) 174
BshNI GGYRCC 1 cut(s) 352
BslFI GGGAC 1 cut(s) 449
BslI CCNNNNNNNGG 2 cut(s) 170, 406
BsmFI GGGAC 1 cut(s) 449
BsmI GAATGC 1 cut(s) 216
BsnI GGCC 1 cut(s) 174
Bsp143I GATC 1 cut(s) 396
BspACI CCGC 2 cut(s) 82, 282
BspANI GGCC 1 cut(s) 174
BspLI GGNNCC 2 cut(s) 354, 398
BspPI GGATC 2 cut(s) 391, 404
BspT107I GGYRCC 1 cut(s) 352
BsrI ACTGG 1 cut(s) 119
BssMI GATC 1 cut(s) 396
Bst4CI ACNGT 2 cut(s) 34, 335
Bst6I CTCTTC 1 cut(s) 362
BstC8I GCNNGC 1 cut(s) 176
BstKTI GATC 1 cut(s) 399
BstMBI GATC 1 cut(s) 396
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstV1I GCAGC 3 cut(s) 134, 184, 482
BstV2I GAAGAC 1 cut(s) 240
BstX2I RGATCY 1 cut(s) 396
BstYI RGATCY 1 cut(s) 396
BsuRI GGCC 1 cut(s) 174
Cac8I GCNNGC 1 cut(s) 176
Csp6I GTAC 1 cut(s) 353
CviQI GTAC 1 cut(s) 353
DpnI GATC 1 cut(s) 398
DpnII GATC 1 cut(s) 396
Eam1104I CTCTTC 1 cut(s) 362
EarI CTCTTC 1 cut(s) 362
Eco57I CTGAAG 3 cut(s) 39, 376, 386
EcoT22I ATGCAT 1 cut(s) 218
FaiI YATR 6 cut(s) 9, 156, 214, 297, 306, 433
FaqI GGGAC 1 cut(s) 449
Fnu4HI GCNGC 3 cut(s) 148, 198, 471
Fsp4HI GCNGC 3 cut(s) 148, 198, 471
GluI GCNGC 3 cut(s) 148, 198, 471
GsaI CCCAGC 1 cut(s) 45
HaeIII GGCC 1 cut(s) 174
HinfI GANTC 1 cut(s) 382
HphI GGTGA 1 cut(s) 247
Hpy188I TCNGA 4 cut(s) 30, 366, 416, 449
Hpy188III TCNNGA 3 cut(s) 55, 226, 394
HpyCH4III ACNGT 2 cut(s) 34, 335
HpyCH4IV ACGT 1 cut(s) 74
HpyCH4V TGCA 3 cut(s) 79, 216, 312
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpySE526I ACGT 1 cut(s) 74
KpnI GGTACC 1 cut(s) 356
Kzo9I GATC 1 cut(s) 396
LmnI GCTCC 1 cut(s) 268
Lsp1109I GCAGC 3 cut(s) 134, 184, 482
MaeII ACGT 1 cut(s) 74
MalI GATC 1 cut(s) 398
MboI GATC 1 cut(s) 396
MboII GAAGA 5 cut(s) 128, 131, 240, 317, 379
MflI RGATCY 1 cut(s) 396
MnlI CCTC 3 cut(s) 201, 272, 343
Mph1103I ATGCAT 1 cut(s) 218
MroXI GAANNNNTTC 1 cut(s) 421
Mva1269I GAATGC 1 cut(s) 216
MwoI GCNNNNNNNGC 1 cut(s) 203
NdeII GATC 1 cut(s) 396
NlaIV GGNNCC 2 cut(s) 354, 398
NsiI ATGCAT 1 cut(s) 218
PctI GAATGC 1 cut(s) 216
PdmI GAANNNNTTC 1 cut(s) 421
PfeI GAWTC 1 cut(s) 382
PkrI GCNGC 3 cut(s) 149, 199, 472
PspFI CCCAGC 1 cut(s) 41
PspN4I GGNNCC 2 cut(s) 354, 398
PsuI RGATCY 1 cut(s) 396
RsaI GTAC 1 cut(s) 354
RsaNI GTAC 1 cut(s) 353
SatI GCNGC 3 cut(s) 148, 198, 471
Sau3AI GATC 1 cut(s) 396
SetI ASST 6 cut(s) 77, 113, 208, 243, 354, 381
SsiI CCGC 2 cut(s) 82, 282
TaaI ACNGT 2 cut(s) 34, 335
TaiI ACGT 1 cut(s) 77
TfiI GAWTC 1 cut(s) 382
TseI GCWGC 3 cut(s) 147, 197, 470
TspDTI ATGAA 1 cut(s) 317
XmnI GAANNNNTTC 1 cut(s) 421
Zsp2I ATGCAT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.