Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001087

Physical Location & Seq

Genomic Coordinates Reverse (-)

11174450 .. 11176881

Gene Structure 2432 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G20870.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGTTGCAGAACGATACACAGTCGATTTGAATAAGCCACTTGTGTTTCAGGTTGGTCATCTTGGCGAAGAATATCAGGAATGGATTCATCAACCTATTGTATGCGTTGAGGGTCCTCGTTTTTTCGAAAGTGATTTTTGGGAGTTTTTGACTCGCACGGTTTGGTGGGCAATCCCAACAATCTGGCTTCCAGTTGTTTGCTACGTTCTTTCAATATCGGCGAGTAAGGGACTTACGTTTCCCCAGATCGGTTTAATAGTTGCTTTTGGTGTACTCACGTGGACACTGCTCGAGTACACGCTTCATCGCTTCCTTTTCCACATCCAAACCAAGAGTTACTGGGCAAACACTGCACACTATCTTCTTCATGGATGCCATCACAAGCACCCACAAGACGGCCTTCGTCTTGTTTTCCCTCCTACAGCAACAGCTATTCTCTTGGTTCCACTATGGAAGCTTCTCCATCTCCTAGCTACTCCTGCTACAGCACCTGCTATTCTTGGAGGCATATTGTTTGGCTATGTGATGTATGATATTACCCATTACTATCTACACCATGGTCAACCTAAAGAACCAACCTTTAAACATCTTAAGAAATACCACCTGAATCATCACTTTAGGATTCAGGACAAAGGATATGGAATCACTTCCTCTCTATGGGACAAAGTCTTTGGAACACTTCCCGGTATTAAAGCCGCTGCGAAGAAGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

237

Amino Acids

27.31

Weight (kDa)

9.02

Isoelectric Point (pI)

30.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	88 - 226	8.4e-17	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34770 AT4G20870 AT4G20870
fragaria_vesca	FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10760 FvH4_3g10760 FvH4_3g10760 FvH4_3g10780 FvH4_3g10780 FvH4_3g10780
malus_domestica	MD05G1268900.v1.1
prunus_persica	Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1
pyrus_communis	pycom05g25190 pycom10g20540
rosa_chinensis	RchiOBHm_Chr5g0017441 RchiOBHm_Chr5g0017481 RchiOBHm_Chr5g0017491 RchiOBHm_Chr5g0017501
rosa_laevigata	RLG00000032287 RLG00000032288 RLG00000032292 RLG00000032294
rosa_multiflora	Rmu_sc0007392.1_g000004 Rmu_sc0013973.1_g000006
rosa_roxburghii	Rroxscaffold_1G00059930 Rroxscaffold_1G00059950
rosa_rugosa	Rorug05G0035400 Rorug05G0035500 Rorug05G0035800 Rorug05G0035900 Rorug05G0036000 Rorug05G0036100 Rorug05G0036200 Rorug05G0036300 Rorug05G0036400 Rorug05G0036500 Rorug05G0036600
rosa_samantha	Rh5AG130200 Rh5AG130400 Rh5BG128400 Rh5BG128600 Rh5CG140900 Rh5DG130400 Rh5DG130600 Rh5DG130700 Rh5DG130800 Rh7BG398200
rosa_wichuraiana	Rw5G011240 Rw5G011250 Rw5G011260 Rw5G011270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	499
Acc36I	ACCTGC	1 cut(s)	499
AciI	CCGC	1 cut(s)	696
AcvI	CACGTG	1 cut(s)	279
AfaI	GTAC	2 cut(s)	273, 296
AfiI	CCNNNNNNNGG	3 cut(s)	248, 395, 657
AflII	CTTAAG	1 cut(s)	590
AgsI	TTSAA	2 cut(s)	31, 213
AluBI	AGCT	4 cut(s)	431, 457, 473, 711
AluI	AGCT	4 cut(s)	431, 457, 473, 711
AlwNI	CAGNNNCTG	1 cut(s)	491
Ama87I	CYCGRG	1 cut(s)	290
AoxI	GGCC	1 cut(s)	397
ApeKI	GCWGC	1 cut(s)	698
ArsI	GACNNNNNNTTYG	2 cut(s)	653, 685
Asp700I	GAANNNNTTC	2 cut(s)	84, 646
AspS9I	GGNCC	1 cut(s)	113
AsuC2I	CCSGG	1 cut(s)	684
AsuII	TTCGAA	1 cut(s)	126
AvaI	CYCGRG	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	113
BbrPI	CACGTG	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	685
BccI	CCATC	2 cut(s)	384, 471
BceAI	ACGGC	1 cut(s)	412
BcnI	CCSGG	1 cut(s)	684
BfaI	CTAG	1 cut(s)	470
BfmI	CTRYAG	2 cut(s)	420, 483
BfrI	CTTAAG	1 cut(s)	590
BfuAI	ACCTGC	1 cut(s)	499
BisI	GCNGC	2 cut(s)	696, 699
BlsI	GCNGC	2 cut(s)	697, 700
Bme1390I	CCNGG	1 cut(s)	684
Bme18I	GGWCC	1 cut(s)	113
BmeT110I	CYCGRG	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	2 cut(s)	114, 444
BmrFI	CCNGG	1 cut(s)	684
BmrI	ACTGGG	1 cut(s)	349
BmsI	GCATC	1 cut(s)	362
BmuI	ACTGGG	1 cut(s)	349
Bpu14I	TTCGAA	1 cut(s)	126
BpuMI	CCSGG	1 cut(s)	684
BsaAI	YACGTR	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	556
Bsc4I	CCNNNNNNNGG	3 cut(s)	248, 395, 657
Bse1I	ACTGG	2 cut(s)	191, 344
BseDI	CCNNGG	1 cut(s)	556
BseGI	GGATG	2 cut(s)	321, 377
BseLI	CCNNNNNNNGG	3 cut(s)	248, 395, 657
BseNI	ACTGG	2 cut(s)	191, 344
BseXI	GCAGC	1 cut(s)	685
BsgI	GTGCAG	1 cut(s)	336
BshFI	GGCC	1 cut(s)	399
BsiHKCI	CYCGRG	1 cut(s)	290
BsiSI	CCGG	1 cut(s)	684
BslFI	GGGAC	2 cut(s)	243, 674
BslI	CCNNNNNNNGG	3 cut(s)	248, 395, 657
BsmFI	GGGAC	2 cut(s)	243, 674
BsnI	GGCC	1 cut(s)	399
BsoBI	CYCGRG	1 cut(s)	290
Bsp119I	TTCGAA	1 cut(s)	126
Bsp143I	GATC	1 cut(s)	246
Bsp19I	CCATGG	1 cut(s)	556
BspACI	CCGC	1 cut(s)	696
BspANI	GGCC	1 cut(s)	399
BspLI	GGNNCC	2 cut(s)	114, 444
BspMI	ACCTGC	1 cut(s)	499
BspQI	GCTCTTC	1 cut(s)	701
BspT104I	TTCGAA	1 cut(s)	126
BspTI	CTTAAG	1 cut(s)	590
BsrI	ACTGG	2 cut(s)	191, 344
BssECI	CCNNGG	1 cut(s)	556
BssMI	GATC	1 cut(s)	246
BssT1I	CCWWGG	1 cut(s)	556
Bst4CI	ACNGT	2 cut(s)	22, 160
Bst6I	CTCTTC	1 cut(s)	701
BstAFI	CTTAAG	1 cut(s)	590
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstBAI	YACGTR	1 cut(s)	279
BstBI	TTCGAA	1 cut(s)	126
BstDSI	CCRYGG	1 cut(s)	556
BstF5I	GGATG	2 cut(s)	321, 377
BstKTI	GATC	1 cut(s)	249
BstMBI	GATC	1 cut(s)	246
BstMWI	GCNNNNNNNGC	2 cut(s)	350, 479
BstSCI	CCNGG	1 cut(s)	682
BstSFI	CTRYAG	2 cut(s)	420, 483
BstV1I	GCAGC	1 cut(s)	685
BstXI	CCANNNNNNTGG	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	399
BtgI	CCRYGG	1 cut(s)	556
BtgZI	GCGATG	1 cut(s)	290
BtsCI	GGATG	2 cut(s)	321, 377
BtsI	GCAGTG	2 cut(s)	284, 348
BtsIMutI	CAGTG	2 cut(s)	284, 348
BveI	ACCTGC	1 cut(s)	499
CaiI	CAGNNNCTG	1 cut(s)	491
Cfr13I	GGNCC	1 cut(s)	113
Csp6I	GTAC	2 cut(s)	272, 295
CviAII	CATG	2 cut(s)	368, 557
CviJI	RGCY	9 cut(s)	37, 187, 399, 431, 457, 473, 519, 695, 711
CviKI_1	RGCY	9 cut(s)	37, 187, 399, 431, 457, 473, 519, 695, 711
CviQI	GTAC	2 cut(s)	272, 295
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
DraI	TTTAAA	1 cut(s)	583
Eam1104I	CTCTTC	1 cut(s)	701
EarI	CTCTTC	1 cut(s)	701
Eco130I	CCWWGG	1 cut(s)	556
Eco47I	GGWCC	1 cut(s)	113
Eco72I	CACGTG	1 cut(s)	279
Eco88I	CYCGRG	1 cut(s)	290
EcoO109I	RGGNCCY	1 cut(s)	113
EcoT14I	CCWWGG	1 cut(s)	556
ErhI	CCWWGG	1 cut(s)	556
FaeI	CATG	2 cut(s)	371, 560
FaiI	YATR	9 cut(s)	103, 369, 451, 509, 522, 531, 558, 639, 658
FalI	AAGNNNNNCTT	2 cut(s)	384, 416
FaqI	GGGAC	2 cut(s)	243, 674
FatI	CATG	2 cut(s)	367, 556
Fnu4HI	GCNGC	2 cut(s)	696, 699
FokI	GGATG	2 cut(s)	308, 384
Fsp4HI	GCNGC	2 cut(s)	696, 699
FspBI	CTAG	1 cut(s)	470
GluI	GCNGC	2 cut(s)	696, 699
HaeIII	GGCC	1 cut(s)	399
HapII	CCGG	1 cut(s)	684
Hin1II	CATG	2 cut(s)	371, 560
HincII	GTYRAC	1 cut(s)	563
HindII	GTYRAC	1 cut(s)	563
HindIII	AAGCTT	1 cut(s)	455
HinfI	GANTC	5 cut(s)	85, 151, 607, 622, 642
HpaII	CCGG	1 cut(s)	684
Hpy166II	GTNNAC	4 cut(s)	272, 282, 297, 563
Hpy188III	TCNNGA	2 cut(s)	77, 626
Hpy8I	GTNNAC	4 cut(s)	272, 282, 297, 563
HpyAV	CCTTC	1 cut(s)	410
HpyCH4III	ACNGT	2 cut(s)	22, 160
HpyCH4IV	ACGT	3 cut(s)	204, 236, 278
HpyCH4V	TGCA	2 cut(s)	8, 353
HpyF10VI	GCNNNNNNNGC	2 cut(s)	350, 479
HpySE526I	ACGT	3 cut(s)	204, 236, 278
Hsp92II	CATG	2 cut(s)	371, 560
Kzo9I	GATC	1 cut(s)	246
LguI	GCTCTTC	1 cut(s)	701
Lsp1109I	GCAGC	1 cut(s)	685
LweI	GCATC	1 cut(s)	362
MaeI	CTAG	1 cut(s)	470
MaeII	ACGT	3 cut(s)	204, 236, 278
MaeIII	GTNAC	1 cut(s)	335
MalI	GATC	1 cut(s)	248
MboI	GATC	1 cut(s)	246
MboII	GAAGA	3 cut(s)	80, 353, 356
MlyI	GAGTC	1 cut(s)	145
MnlI	CCTC	5 cut(s)	103, 126, 426, 497, 661
MroXI	GAANNNNTTC	2 cut(s)	84, 646
MseI	TTAA	4 cut(s)	254, 582, 591, 690
MspA1I	CMGCKG	1 cut(s)	698
MspCI	CTTAAG	1 cut(s)	590
MspI	CCGG	1 cut(s)	684
MspR9I	CCNGG	1 cut(s)	684
MwoI	GCNNNNNNNGC	2 cut(s)	350, 479
NciI	CCSGG	1 cut(s)	684
NcoI	CCATGG	1 cut(s)	556
NdeII	GATC	1 cut(s)	246
NlaIII	CATG	2 cut(s)	371, 560
NlaIV	GGNNCC	2 cut(s)	114, 444
NspV	TTCGAA	1 cut(s)	126
PaeR7I	CTCGAG	1 cut(s)	290
PaqCI	CACCTGC	1 cut(s)	499
PciSI	GCTCTTC	1 cut(s)	701
PdmI	GAANNNNTTC	2 cut(s)	84, 646
PfeI	GAWTC	4 cut(s)	85, 607, 622, 642
PflFI	GACNNNGTC	1 cut(s)	665
PkrI	GCNGC	2 cut(s)	697, 700
PleI	GAGTC	1 cut(s)	145
PmaCI	CACGTG	1 cut(s)	279
PmlI	CACGTG	1 cut(s)	279
PpsI	GAGTC	1 cut(s)	145
Ppu21I	YACGTR	1 cut(s)	279
PpuMI	RGGWCCY	1 cut(s)	113
Psp5II	RGGWCCY	1 cut(s)	113
PspCI	CACGTG	1 cut(s)	279
PspN4I	GGNNCC	2 cut(s)	114, 444
PspPI	GGNCC	1 cut(s)	113
PspPPI	RGGWCCY	1 cut(s)	113
PspXI	VCTCGAGB	1 cut(s)	290
PstNI	CAGNNNCTG	1 cut(s)	491
PsyI	GACNNNGTC	1 cut(s)	665
RsaI	GTAC	2 cut(s)	273, 296
RsaNI	GTAC	2 cut(s)	272, 295
SapI	GCTCTTC	1 cut(s)	701
SaqAI	TTAA	4 cut(s)	254, 582, 591, 690
SatI	GCNGC	2 cut(s)	696, 699
Sau3AI	GATC	1 cut(s)	246
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	1 cut(s)	145
ScrFI	CCNGG	1 cut(s)	684
SfaNI	GCATC	1 cut(s)	362
SfcI	CTRYAG	2 cut(s)	420, 483
Sfr274I	CTCGAG	1 cut(s)	290
SfuI	TTCGAA	1 cut(s)	126
SinI	GGWCC	1 cut(s)	113
SlaI	CTCGAG	1 cut(s)	290
SmlI	CTYRAG	2 cut(s)	290, 590
SmoI	CTYRAG	2 cut(s)	290, 590
SsiI	CCGC	1 cut(s)	696
SspMI	CTAG	1 cut(s)	470
StyD4I	CCNGG	1 cut(s)	682
StyI	CCWWGG	1 cut(s)	556
TaaI	ACNGT	2 cut(s)	22, 160
TaiI	ACGT	3 cut(s)	207, 239, 281
TaqI	TCGA	3 cut(s)	24, 126, 291
TatI	WGTACW	2 cut(s)	271, 294
TauI	GCSGC	1 cut(s)	698
TfiI	GAWTC	4 cut(s)	85, 607, 622, 642
Tru1I	TTAA	4 cut(s)	254, 582, 591, 690
Tru9I	TTAA	4 cut(s)	254, 582, 591, 690
TscAI	CASTG	2 cut(s)	291, 355
TseI	GCWGC	1 cut(s)	698
TspDTI	ATGAA	3 cut(s)	77, 293, 356
TspRI	CASTG	2 cut(s)	291, 355
Tth111I	GACNNNGTC	1 cut(s)	665
Vha464I	CTTAAG	1 cut(s)	590
VpaK11BI	GGWCC	1 cut(s)	113
XhoI	CTCGAG	1 cut(s)	290
XmnI	GAANNNNTTC	2 cut(s)	84, 646
XspI	CTAG	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.