Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001087

Physical Location & Seq

Genomic Coordinates Forward (+)

13124453 .. 13132688

Gene Structure 8236 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032288

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGTTGCTCAGGACTTCCAAATTGATTTGAATAAAGCCCTCGTATTCCAGGTTGGCCATCTTGGAGAGGCATATCACGAGTGGGTTCACCAGCCTATTGTTTGCACAGAGGGCCCTCGATTTTTTGAAAATGAATTTTTGGAGTTCTTGTCCCGCACTGTGTGGTGGGCAGTTCCTACCATATGGCTTCCGGTTGTCTTTTACTCTATCTCCAAGTCCGTACGGATGGGCCATACCTTTCCTGAAATAGTTCTGATGGTTCTTTTTGGCACTTTGGTGTGGACATTGCTTGAATATGCAACTCATCGTTTCCTTTTCCACATTGAAACCAAGAGCTACTGGGGGAACACCATACATTACCTTCTCCATGGCTTCCATCACAAACACCCAATGGATGGTTTGCGACTTGTTTTTCCTCCAATTGGGACAGCTATTGTTTTTTTTCAAGTGTGGTATATGTTTAGGCTTTTATCGCCTCCATCAGTTGCTCCGGCTTTGTTTGGAGGAACCTTATTGGGATATGTAGCATATGATGTCACTCATTACTACCTGCACCATGGGAAGCCATCTAAAAGATTGACTCAAGATCTGAAGAAATATCACTTGAACCATCACTTCAGAATTCAAAGCAAGGGATTCGGGATCAGTTCCTCCTTATGGGACAATGTTTTCGGAACAGTGCCTTCAACAAAAGCTGCTGAGAAAATGAGTAACCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

240

Amino Acids

27.78

Weight (kDa)

8.89

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	88 - 226	9.6e-16	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34770 AT4G20870 AT4G20870
fragaria_vesca	FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10760 FvH4_3g10760 FvH4_3g10760 FvH4_3g10780 FvH4_3g10780 FvH4_3g10780
malus_domestica	MD05G1268900.v1.1
prunus_persica	Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1
pyrus_communis	pycom05g25190 pycom10g20540
rosa_chinensis	RchiOBHm_Chr5g0017441 RchiOBHm_Chr5g0017481 RchiOBHm_Chr5g0017491 RchiOBHm_Chr5g0017501
rosa_laevigata	RLG00000032287 RLG00000032288 RLG00000032292 RLG00000032294
rosa_multiflora	Rmu_sc0007392.1_g000004 Rmu_sc0013973.1_g000006
rosa_roxburghii	Rroxscaffold_1G00059930 Rroxscaffold_1G00059950
rosa_rugosa	Rorug05G0035400 Rorug05G0035500 Rorug05G0035800 Rorug05G0035900 Rorug05G0036000 Rorug05G0036100 Rorug05G0036200 Rorug05G0036300 Rorug05G0036400 Rorug05G0036500 Rorug05G0036600
rosa_samantha	Rh5AG130200 Rh5AG130400 Rh5BG128400 Rh5BG128600 Rh5CG140900 Rh5DG130400 Rh5DG130600 Rh5DG130700 Rh5DG130800 Rh7BG398200
rosa_wichuraiana	Rw5G011240 Rw5G011250 Rw5G011260 Rw5G011270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	558
AccB7I	CCANNNNNTGG	1 cut(s)	395
AciI	CCGC	1 cut(s)	154
AclWI	GGATC	1 cut(s)	650
AcoI	YGGCCR	1 cut(s)	55
AcsI	RAATTY	2 cut(s)	134, 621
AcuI	CTGAAG	2 cut(s)	601, 611
AdeI	CACNNNGTG	1 cut(s)	162
AfaI	GTAC	1 cut(s)	222
AfiI	CCNNNNNNNGG	3 cut(s)	395, 422, 657
AgsI	TTSAA	8 cut(s)	31, 128, 293, 326, 446, 607, 626, 687
AjnI	CCWGG	1 cut(s)	48
AleI	CACNNNNGTG	1 cut(s)	275
AluBI	AGCT	3 cut(s)	336, 431, 695
AluI	AGCT	3 cut(s)	336, 431, 695
AlwI	GGATC	1 cut(s)	650
AoxI	GGCC	3 cut(s)	55, 112, 229
ApaI	GGGCCC	1 cut(s)	116
ApeKI	GCWGC	1 cut(s)	695
ApoI	RAATTY	2 cut(s)	134, 621
ArsI	GACNNNNNNTTYG	2 cut(s)	653, 685
Asp700I	GAANNNNTTC	1 cut(s)	249
AspS9I	GGNCC	3 cut(s)	112, 113, 229
AsuHPI	GGTGA	1 cut(s)	80
BaeGI	GKGCMC	1 cut(s)	116
BalI	TGGCCA	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	116
BauI	CACGAG	1 cut(s)	77
BbvI	GCAGC	1 cut(s)	682
BccI	CCATC	8 cut(s)	66, 220, 250, 384, 389, 487, 574, 618
BcgI	CGANNNNNNTGC	2 cut(s)	619, 653
BciT130I	CCWGG	1 cut(s)	50
BfuAI	ACCTGC	1 cut(s)	558
BglII	AGATCT	1 cut(s)	586
BisI	GCNGC	1 cut(s)	696
BlsI	GCNGC	1 cut(s)	697
Bme1390I	CCNGG	1 cut(s)	50
BmgT120I	GGNCC	3 cut(s)	112, 113, 229
BmiI	GGNNCC	2 cut(s)	114, 508
BmrFI	CCNGG	1 cut(s)	50
BmrI	ACTGGG	1 cut(s)	349
BmuI	ACTGGG	1 cut(s)	349
Bpu10I	CCTNAGC	1 cut(s)	9
BpuEI	CTTGAG	1 cut(s)	567
BsaJI	CCNNGG	2 cut(s)	367, 556
BsaWI	WCCGGW	1 cut(s)	190
BsaXI	ACNNNNNCTCC	4 cut(s)	134, 164, 194, 224
Bsc4I	CCNNNNNNNGG	3 cut(s)	395, 422, 657
Bse1I	ACTGG	2 cut(s)	344, 715
Bse3DI	GCAATG	1 cut(s)	284
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	2 cut(s)	367, 556
BseGI	GGATG	2 cut(s)	231, 400
BseLI	CCNNNNNNNGG	3 cut(s)	395, 422, 657
BseMI	GCAATG	1 cut(s)	284
BseMII	CTCAG	2 cut(s)	23, 690
BseNI	ACTGG	2 cut(s)	344, 715
BseSI	GKGCMC	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	682
BsgI	GTGCAG	1 cut(s)	536
BshFI	GGCC	3 cut(s)	57, 114, 231
BsiSI	CCGG	2 cut(s)	191, 491
BsiWI	CGTACG	1 cut(s)	220
BslFI	GGGAC	3 cut(s)	136, 439, 674
BslI	CCNNNNNNNGG	3 cut(s)	395, 422, 657
BsmFI	GGGAC	3 cut(s)	136, 439, 674
BsnI	GGCC	3 cut(s)	57, 114, 231
Bsp120I	GGGCCC	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp143I	GATC	2 cut(s)	586, 642
Bsp19I	CCATGG	2 cut(s)	367, 556
BspACI	CCGC	1 cut(s)	154
BspANI	GGCC	3 cut(s)	57, 114, 231
BspCNI	CTCAG	2 cut(s)	22, 691
BspLI	GGNNCC	2 cut(s)	114, 508
BspMI	ACCTGC	1 cut(s)	558
BspPI	GGATC	1 cut(s)	650
BsrDI	GCAATG	1 cut(s)	284
BsrI	ACTGG	2 cut(s)	344, 715
BssECI	CCNNGG	2 cut(s)	367, 556
BssMI	GATC	2 cut(s)	586, 642
BssSI	CACGAG	1 cut(s)	77
BssT1I	CCWWGG	2 cut(s)	367, 556
Bst2BI	CACGAG	1 cut(s)	77
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	2 cut(s)	160, 679
BstDEI	CTNAG	2 cut(s)	9, 699
BstDSI	CCRYGG	2 cut(s)	367, 556
BstF5I	GGATG	2 cut(s)	231, 400
BstKTI	GATC	2 cut(s)	589, 645
BstMBI	GATC	2 cut(s)	586, 642
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 472
BstNI	CCWGG	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	48
BstSLI	GKGCMC	1 cut(s)	116
BstV1I	GCAGC	1 cut(s)	682
BstX2I	RGATCY	1 cut(s)	586
BstYI	RGATCY	1 cut(s)	586
BsuRI	GGCC	3 cut(s)	57, 114, 231
BtgI	CCRYGG	2 cut(s)	367, 556
BtsCI	GGATG	2 cut(s)	231, 400
BtsIMutI	CAGTG	2 cut(s)	156, 684
BveI	ACCTGC	1 cut(s)	558
Cfr13I	GGNCC	3 cut(s)	112, 113, 229
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	2 cut(s)	368, 557
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	2 cut(s)	9, 699
DpnI	GATC	2 cut(s)	588, 644
DpnII	GATC	2 cut(s)	586, 642
DraIII	CACNNNGTG	1 cut(s)	162
EaeI	YGGCCR	1 cut(s)	55
Eco130I	CCWWGG	2 cut(s)	367, 556
Eco24I	GRGCYC	1 cut(s)	116
Eco57I	CTGAAG	2 cut(s)	601, 611
EcoO109I	RGGNCCY	2 cut(s)	112, 113
EcoRI	GAATTC	1 cut(s)	621
EcoRII	CCWGG	1 cut(s)	48
EcoT14I	CCWWGG	2 cut(s)	367, 556
EcoT38I	GRGCYC	1 cut(s)	116
ErhI	CCWWGG	2 cut(s)	367, 556
FaeI	CATG	2 cut(s)	371, 560
FaqI	GGGAC	3 cut(s)	136, 439, 674
FatI	CATG	2 cut(s)	367, 556
FauI	CCCGC	1 cut(s)	161
FauNDI	CATATG	2 cut(s)	182, 529
Fnu4HI	GCNGC	1 cut(s)	696
FokI	GGATG	2 cut(s)	238, 407
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	1 cut(s)	696
GluI	GCNGC	1 cut(s)	696
HaeIII	GGCC	3 cut(s)	57, 114, 231
HapII	CCGG	2 cut(s)	191, 491
Hin1II	CATG	2 cut(s)	371, 560
HinfI	GANTC	2 cut(s)	580, 636
HpaII	CCGG	2 cut(s)	191, 491
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	2 cut(s)	88, 282
Hpy188I	TCNGA	4 cut(s)	255, 591, 620, 674
Hpy188III	TCNNGA	5 cut(s)	11, 77, 242, 584, 640
Hpy8I	GTNNAC	2 cut(s)	88, 282
HpyAV	CCTTC	2 cut(s)	371, 693
HpyCH4III	ACNGT	2 cut(s)	160, 679
HpyCH4V	TGCA	3 cut(s)	105, 299, 553
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 472
HpyF3I	CTNAG	2 cut(s)	9, 699
Hsp92II	CATG	2 cut(s)	371, 560
Kzo9I	GATC	2 cut(s)	586, 642
LmnI	GCTCC	1 cut(s)	493
LpnPI	CCDG	8 cut(s)	35, 62, 104, 204, 255, 325, 504, 563
Lsp1109I	GCAGC	1 cut(s)	682
MaeIII	GTNAC	2 cut(s)	535, 710
MalI	GATC	2 cut(s)	588, 644
MboI	GATC	2 cut(s)	586, 642
MboII	GAAGA	1 cut(s)	604
MfeI	CAATTG	1 cut(s)	420
MflI	RGATCY	1 cut(s)	586
MhlI	GDGCHC	1 cut(s)	116
MlsI	TGGCCA	1 cut(s)	57
MluCI	AATT	4 cut(s)	21, 134, 420, 621
MluNI	TGGCCA	1 cut(s)	57
MlyI	GAGTC	1 cut(s)	574
MnlI	CCTC	8 cut(s)	50, 61, 103, 126, 426, 486, 497, 661
Mox20I	TGGCCA	1 cut(s)	57
MroXI	GAANNNNTTC	1 cut(s)	249
MscI	TGGCCA	1 cut(s)	57
MslI	CAYNNNNRTG	1 cut(s)	275
Msp20I	TGGCCA	1 cut(s)	57
MspI	CCGG	2 cut(s)	191, 491
MspR9I	CCNGG	1 cut(s)	50
MunI	CAATTG	1 cut(s)	420
MvaI	CCWGG	1 cut(s)	50
MwoI	GCNNNNNNNGC	2 cut(s)	111, 472
NcoI	CCATGG	2 cut(s)	367, 556
NdeI	CATATG	2 cut(s)	182, 529
NdeII	GATC	2 cut(s)	586, 642
NlaIII	CATG	2 cut(s)	371, 560
NlaIV	GGNNCC	2 cut(s)	114, 508
NmuCI	GTSAC	1 cut(s)	535
OliI	CACNNNNGTG	1 cut(s)	275
PdmI	GAANNNNTTC	1 cut(s)	249
PfeI	GAWTC	1 cut(s)	636
Pfl23II	CGTACG	1 cut(s)	220
PflMI	CCANNNNNTGG	1 cut(s)	395
PkrI	GCNGC	1 cut(s)	697
PleI	GAGTC	1 cut(s)	574
PpsI	GAGTC	1 cut(s)	574
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PspLI	CGTACG	1 cut(s)	220
PspN4I	GGNNCC	2 cut(s)	114, 508
PspOMI	GGGCCC	1 cut(s)	112
PspPI	GGNCC	3 cut(s)	112, 113, 229
PsuI	RGATCY	1 cut(s)	586
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
RseI	CAYNNNNRTG	1 cut(s)	275
SatI	GCNGC	1 cut(s)	696
Sau3AI	GATC	2 cut(s)	586, 642
Sau96I	GGNCC	3 cut(s)	112, 113, 229
SchI	GAGTC	1 cut(s)	574
ScrFI	CCNGG	1 cut(s)	50
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	8 cut(s)	54, 239, 338, 363, 433, 512, 552, 697
SmiMI	CAYNNNNRTG	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	582
SmoI	CTYRAG	1 cut(s)	582
Sse9I	AATT	4 cut(s)	21, 134, 420, 621
SsiI	CCGC	1 cut(s)	154
StyD4I	CCNGG	1 cut(s)	48
StyI	CCWWGG	2 cut(s)	367, 556
TaaI	ACNGT	2 cut(s)	160, 679
TaqI	TCGA	1 cut(s)	118
TasI	AATT	4 cut(s)	21, 134, 420, 621
TfiI	GAWTC	1 cut(s)	636
TscAI	CASTG	2 cut(s)	163, 684
TseFI	GTSAC	1 cut(s)	535
TseI	GCWGC	1 cut(s)	695
Tsp45I	GTSAC	1 cut(s)	535
TspDTI	ATGAA	1 cut(s)	147
TspGWI	ACGGA	2 cut(s)	208, 238
TspRI	CASTG	2 cut(s)	163, 684
Van91I	CCANNNNNTGG	1 cut(s)	395
XapI	RAATTY	2 cut(s)	134, 621
XmnI	GAANNNNTTC	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.