Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001087

Physical Location & Seq

Genomic Coordinates Forward (+)

12282567 .. 12284547

Gene Structure 1981 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG128400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGTTGCTCGGGACTTCCAAGTTGATTTGAATAAAGCCCTCGTATTCCAGGTTGGCCATCTTGGAGAATCATATCAAGAGTGGGTTCACCAGCCTATTGTCTGCACTGAAGGCCCTCGATTTTTTGAAAATGAATTTTTGGAGTTCTTGACCCGCACTGTGTGGTGGGCAGTTCCTACCATATGGCTTCCGGTTGTGTTTTTTTCTATCTCCAAGTCCGTACGGATGGGCCATACCTTTCCTGAAATAGTTATGATGGTTCTTTTTGGCATTTTAGTGTGGACGTTGTCTGAATATACAATTCACCGTTTCCTTTTCCACATTGAAACCAAAAGCTACTGGGGGAACACCATACATTATGTTCTCCATGGCTGCCATCACAAACACCCAATGGATAGTTTGCGACTTGTTCTTCCTCCGACTGCAACAGCTATTTTATGTCTTCTAGTATGGTATATGTTTAGGCTTTTATCACCTCCATCAGTTGCTCCGGCTTTGTTTGGAGGAACCTTGTTGGGATATGTAGTATATGATGTCACTCATTACTACCTACACCATGGGAAGCCATCTAAAAGATTGACTCAAGATCTGAAGAAATATCACTTGAACCATCACTTCAGAATTCAAAGTAAGGGATTCGGGGTCACTTCCTCCTTATGGGACAATGTTTTCGGAACAGTGCCTTCAACAAAAGCTGCCGAGAAAATGAGTAACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

239

Amino Acids

27.73

Weight (kDa)

8.93

Isoelectric Point (pI)

45.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	87 - 226	8e-17	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34770 AT4G20870 AT4G20870
fragaria_vesca	FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10760 FvH4_3g10760 FvH4_3g10760 FvH4_3g10780 FvH4_3g10780 FvH4_3g10780
malus_domestica	MD05G1268900.v1.1
prunus_persica	Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1
pyrus_communis	pycom05g25190 pycom10g20540
rosa_chinensis	RchiOBHm_Chr5g0017441 RchiOBHm_Chr5g0017481 RchiOBHm_Chr5g0017491 RchiOBHm_Chr5g0017501
rosa_laevigata	RLG00000032287 RLG00000032288 RLG00000032292 RLG00000032294
rosa_multiflora	Rmu_sc0007392.1_g000004 Rmu_sc0013973.1_g000006
rosa_roxburghii	Rroxscaffold_1G00059930 Rroxscaffold_1G00059950
rosa_rugosa	Rorug05G0035400 Rorug05G0035500 Rorug05G0035800 Rorug05G0035900 Rorug05G0036000 Rorug05G0036100 Rorug05G0036200 Rorug05G0036300 Rorug05G0036400 Rorug05G0036500 Rorug05G0036600
rosa_samantha	Rh5AG130200 Rh5AG130400 Rh5BG128400 Rh5BG128600 Rh5CG140900 Rh5DG130400 Rh5DG130600 Rh5DG130700 Rh5DG130800 Rh7BG398200
rosa_wichuraiana	Rw5G011240 Rw5G011250 Rw5G011260 Rw5G011270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	154
AcoI	YGGCCR	1 cut(s)	55
AcsI	RAATTY	2 cut(s)	134, 621
AcuI	CTGAAG	3 cut(s)	129, 601, 611
AdeI	CACNNNGTG	1 cut(s)	162
AfaI	GTAC	1 cut(s)	222
AfiI	CCNNNNNNNGG	1 cut(s)	657
AgsI	TTSAA	6 cut(s)	31, 128, 326, 607, 626, 687
AjnI	CCWGG	1 cut(s)	48
AluBI	AGCT	3 cut(s)	336, 431, 695
AluI	AGCT	3 cut(s)	336, 431, 695
Ama87I	CYCGRG	1 cut(s)	9
AoxI	GGCC	3 cut(s)	55, 112, 229
ApeKI	GCWGC	2 cut(s)	372, 695
ApoI	RAATTY	2 cut(s)	134, 621
ArsI	GACNNNNNNTTYG	2 cut(s)	653, 685
AspS9I	GGNCC	2 cut(s)	113, 229
AsuHPI	GGTGA	3 cut(s)	80, 296, 465
AvaI	CYCGRG	1 cut(s)	9
BalI	TGGCCA	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	434
BbvI	GCAGC	2 cut(s)	359, 682
BccI	CCATC	7 cut(s)	66, 220, 250, 384, 487, 574, 618
BciT130I	CCWGG	1 cut(s)	50
BfaI	CTAG	1 cut(s)	446
BglII	AGATCT	1 cut(s)	586
BisI	GCNGC	2 cut(s)	373, 696
BlsI	GCNGC	2 cut(s)	374, 697
Bme1390I	CCNGG	1 cut(s)	50
BmeT110I	CYCGRG	1 cut(s)	9
BmgT120I	GGNCC	2 cut(s)	113, 229
BmiI	GGNNCC	1 cut(s)	508
BmrFI	CCNGG	1 cut(s)	50
BmrI	ACTGGG	1 cut(s)	349
BmuI	ACTGGG	1 cut(s)	349
BpiI	GAAGAC	1 cut(s)	434
BpuEI	CTTGAG	1 cut(s)	567
BsaJI	CCNNGG	2 cut(s)	367, 556
BsaWI	WCCGGW	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	1 cut(s)	657
Bse1I	ACTGG	2 cut(s)	344, 715
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	2 cut(s)	367, 556
BseGI	GGATG	1 cut(s)	231
BseLI	CCNNNNNNNGG	1 cut(s)	657
BseNI	ACTGG	2 cut(s)	344, 715
BseXI	GCAGC	2 cut(s)	359, 682
BsgI	GTGCAG	1 cut(s)	88
BshFI	GGCC	3 cut(s)	57, 114, 231
BsiHKCI	CYCGRG	1 cut(s)	9
BsiSI	CCGG	2 cut(s)	191, 491
BsiWI	CGTACG	1 cut(s)	220
BslFI	GGGAC	2 cut(s)	26, 674
BslI	CCNNNNNNNGG	1 cut(s)	657
BsmFI	GGGAC	2 cut(s)	26, 674
BsnI	GGCC	3 cut(s)	57, 114, 231
BsoBI	CYCGRG	1 cut(s)	9
Bsp143I	GATC	1 cut(s)	586
Bsp19I	CCATGG	2 cut(s)	367, 556
BspACI	CCGC	1 cut(s)	154
BspANI	GGCC	3 cut(s)	57, 114, 231
BspLI	GGNNCC	1 cut(s)	508
BsrI	ACTGG	2 cut(s)	344, 715
BssECI	CCNNGG	2 cut(s)	367, 556
BssMI	GATC	1 cut(s)	586
BssT1I	CCWWGG	2 cut(s)	367, 556
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	3 cut(s)	160, 308, 679
BstDSI	CCRYGG	2 cut(s)	367, 556
BstF5I	GGATG	1 cut(s)	231
BstKTI	GATC	1 cut(s)	589
BstMBI	GATC	1 cut(s)	586
BstMWI	GCNNNNNNNGC	1 cut(s)	111
BstNI	CCWGG	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	48
BstV1I	GCAGC	2 cut(s)	359, 682
BstV2I	GAAGAC	1 cut(s)	434
BstX2I	RGATCY	1 cut(s)	586
BstYI	RGATCY	1 cut(s)	586
BsuRI	GGCC	3 cut(s)	57, 114, 231
BtgI	CCRYGG	2 cut(s)	367, 556
BtsCI	GGATG	1 cut(s)	231
BtsIMutI	CAGTG	3 cut(s)	105, 156, 684
Cfr13I	GGNCC	2 cut(s)	113, 229
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	2 cut(s)	368, 557
CviQI	GTAC	1 cut(s)	221
DpnI	GATC	1 cut(s)	588
DpnII	GATC	1 cut(s)	586
DraIII	CACNNNGTG	1 cut(s)	162
EaeI	YGGCCR	1 cut(s)	55
Eco130I	CCWWGG	2 cut(s)	367, 556
Eco57I	CTGAAG	3 cut(s)	129, 601, 611
Eco88I	CYCGRG	1 cut(s)	9
EcoO109I	RGGNCCY	1 cut(s)	113
EcoRI	GAATTC	1 cut(s)	621
EcoRII	CCWGG	1 cut(s)	48
EcoT14I	CCWWGG	2 cut(s)	367, 556
ErhI	CCWWGG	2 cut(s)	367, 556
FaeI	CATG	2 cut(s)	371, 560
FaqI	GGGAC	2 cut(s)	26, 674
FatI	CATG	2 cut(s)	367, 556
FauI	CCCGC	1 cut(s)	161
FauNDI	CATATG	1 cut(s)	182
Fnu4HI	GCNGC	2 cut(s)	373, 696
FokI	GGATG	1 cut(s)	238
Fsp4HI	GCNGC	2 cut(s)	373, 696
FspBI	CTAG	1 cut(s)	446
GluI	GCNGC	2 cut(s)	373, 696
HaeIII	GGCC	3 cut(s)	57, 114, 231
HapII	CCGG	2 cut(s)	191, 491
Hin1II	CATG	2 cut(s)	371, 560
HinfI	GANTC	3 cut(s)	68, 580, 636
HpaII	CCGG	2 cut(s)	191, 491
HphI	GGTGA	3 cut(s)	80, 296, 465
Hpy166II	GTNNAC	2 cut(s)	88, 282
Hpy188I	TCNGA	5 cut(s)	292, 420, 591, 620, 674
Hpy188III	TCNNGA	5 cut(s)	11, 77, 148, 242, 584
Hpy8I	GTNNAC	2 cut(s)	88, 282
HpyAV	CCTTC	2 cut(s)	104, 693
HpyCH4III	ACNGT	3 cut(s)	160, 308, 679
HpyCH4IV	ACGT	1 cut(s)	284
HpyCH4V	TGCA	2 cut(s)	105, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	111
HpySE526I	ACGT	1 cut(s)	284
Hsp92II	CATG	2 cut(s)	371, 560
Kzo9I	GATC	1 cut(s)	586
LmnI	GCTCC	1 cut(s)	493
LpnPI	CCDG	7 cut(s)	35, 62, 104, 204, 255, 325, 504
Lsp1109I	GCAGC	2 cut(s)	359, 682
MaeI	CTAG	1 cut(s)	446
MaeII	ACGT	1 cut(s)	284
MaeIII	GTNAC	3 cut(s)	535, 643, 710
MalI	GATC	1 cut(s)	588
MboI	GATC	1 cut(s)	586
MboII	GAAGA	3 cut(s)	404, 434, 604
MflI	RGATCY	1 cut(s)	586
MlsI	TGGCCA	1 cut(s)	57
MluCI	AATT	3 cut(s)	134, 300, 621
MluNI	TGGCCA	1 cut(s)	57
MlyI	GAGTC	1 cut(s)	574
MmeI	TCCRAC	1 cut(s)	443
MnlI	CCTC	6 cut(s)	50, 126, 426, 486, 497, 661
Mox20I	TGGCCA	1 cut(s)	57
MscI	TGGCCA	1 cut(s)	57
MslI	CAYNNNNRTG	1 cut(s)	275
Msp20I	TGGCCA	1 cut(s)	57
MspI	CCGG	2 cut(s)	191, 491
MspR9I	CCNGG	1 cut(s)	50
MvaI	CCWGG	1 cut(s)	50
MwoI	GCNNNNNNNGC	1 cut(s)	111
NcoI	CCATGG	2 cut(s)	367, 556
NdeI	CATATG	1 cut(s)	182
NdeII	GATC	1 cut(s)	586
NlaIII	CATG	2 cut(s)	371, 560
NlaIV	GGNNCC	1 cut(s)	508
NmuCI	GTSAC	2 cut(s)	535, 643
PfeI	GAWTC	2 cut(s)	68, 636
Pfl23II	CGTACG	1 cut(s)	220
PflFI	GACNNNGTC	1 cut(s)	286
PkrI	GCNGC	2 cut(s)	374, 697
PleI	GAGTC	1 cut(s)	574
PpsI	GAGTC	1 cut(s)	574
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PspLI	CGTACG	1 cut(s)	220
PspN4I	GGNNCC	1 cut(s)	508
PspPI	GGNCC	2 cut(s)	113, 229
PsuI	RGATCY	1 cut(s)	586
PsyI	GACNNNGTC	1 cut(s)	286
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
RseI	CAYNNNNRTG	1 cut(s)	275
SatI	GCNGC	2 cut(s)	373, 696
Sau3AI	GATC	1 cut(s)	586
Sau96I	GGNCC	2 cut(s)	113, 229
SchI	GAGTC	1 cut(s)	574
ScrFI	CCNGG	1 cut(s)	50
SetI	ASST	9 cut(s)	54, 239, 287, 338, 433, 478, 512, 552, 697
SmiMI	CAYNNNNRTG	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	582
SmoI	CTYRAG	1 cut(s)	582
Sse9I	AATT	3 cut(s)	134, 300, 621
SsiI	CCGC	1 cut(s)	154
SspMI	CTAG	1 cut(s)	446
StyD4I	CCNGG	1 cut(s)	48
StyI	CCWWGG	2 cut(s)	367, 556
TaaI	ACNGT	3 cut(s)	160, 308, 679
TaiI	ACGT	1 cut(s)	287
TaqI	TCGA	1 cut(s)	118
TasI	AATT	3 cut(s)	134, 300, 621
TfiI	GAWTC	2 cut(s)	68, 636
TscAI	CASTG	3 cut(s)	112, 163, 684
TseFI	GTSAC	2 cut(s)	535, 643
TseI	GCWGC	2 cut(s)	372, 695
Tsp45I	GTSAC	2 cut(s)	535, 643
TspDTI	ATGAA	1 cut(s)	147
TspGWI	ACGGA	2 cut(s)	208, 238
TspRI	CASTG	3 cut(s)	112, 163, 684
Tth111I	GACNNNGTC	1 cut(s)	286
XapI	RAATTY	2 cut(s)	134, 621
XspI	CTAG	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.