Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001087

Physical Location & Seq

Genomic Coordinates Forward (+)

12316440 .. 12318919

Gene Structure 2480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG140900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGGAAAAGGGGGGAGAAAGAATGAGTTTTTGAGGTTTCTGTGCAGTGTTATAGGTGACAAGATGGTTGCTCAGGACTTCCAAGTTGATTTGAATAAAGCCCTTGTATTCCAGGTTGGCCATCTTGGAGAATCATATCAAGAGTGGGTTCACCAGCCTATTGTCTGCACGGAAGGCCCTCGATTTTTTGAAAATGAATTTTGGGAGTTCTTGACCCGCACTGTGTGGTGGGCAGTTCCTACTATATGGCTTCCAGTTGTGTGTTACTTTATCTCCAAATCTGTACGAATGGGCCATACCTTTCCTGAAATCGTTGTGATGGTTCTTTTTGGCATCTTGGTGTGGACATTGCTTGAATATATGTTGCATCGCTTCCTTTTCCACATTGAAACAAAGACCTACTGGTGGAACACCATACATTATCTTCTCCATGGCTGCCATCACAAACACCCAATGGATGGTTTGCGACTTGTTTTTCCTCCAACTGCAACAGCTATTTTATGTTTTCCGTTCTATAACTTGGTTAAGCTGATGTCATCCCCTTCTGTTGCTCCTGCTTTGTTTGGCGGTGGTTTATTGGGATATGTCATGTATGATGTTACCCATTATTACCTTCATCATGGTCAGCCATCCAGTAAGGTGCCCAAAGATCTTAAGAAATACCACTTGAATCATCACTTCAGGATTCAGGACAAAGGCTTTGGAATAACTTCAAGTCTATGGGACAGGGTGTTTGGAACACTTCCTCAAACTAAAGCAGCTAAGAAAACTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

258

Amino Acids

30.08

Weight (kDa)

9.22

Isoelectric Point (pI)

46.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	108 - 247	5.4e-17	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34770 AT4G20870 AT4G20870
fragaria_vesca	FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10760 FvH4_3g10760 FvH4_3g10760 FvH4_3g10780 FvH4_3g10780 FvH4_3g10780
malus_domestica	MD05G1268900.v1.1
prunus_persica	Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1
pyrus_communis	pycom05g25190 pycom10g20540
rosa_chinensis	RchiOBHm_Chr5g0017441 RchiOBHm_Chr5g0017481 RchiOBHm_Chr5g0017491 RchiOBHm_Chr5g0017501
rosa_laevigata	RLG00000032287 RLG00000032288 RLG00000032292 RLG00000032294
rosa_multiflora	Rmu_sc0007392.1_g000004 Rmu_sc0013973.1_g000006
rosa_roxburghii	Rroxscaffold_1G00059930 Rroxscaffold_1G00059950
rosa_rugosa	Rorug05G0035400 Rorug05G0035500 Rorug05G0035800 Rorug05G0035900 Rorug05G0036000 Rorug05G0036100 Rorug05G0036200 Rorug05G0036300 Rorug05G0036400 Rorug05G0036500 Rorug05G0036600
rosa_samantha	Rh5AG130200 Rh5AG130400 Rh5BG128400 Rh5BG128600 Rh5CG140900 Rh5DG130400 Rh5DG130600 Rh5DG130700 Rh5DG130800 Rh7BG398200
rosa_wichuraiana	Rw5G011240 Rw5G011250 Rw5G011260 Rw5G011270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	640
AccB7I	CCANNNNNTGG	1 cut(s)	458
AciI	CCGC	2 cut(s)	217, 567
AcoI	YGGCCR	1 cut(s)	118
AcsI	RAATTY	1 cut(s)	197
AcuI	CTGAAG	1 cut(s)	664
AdeI	CACNNNGTG	1 cut(s)	225
AfaI	GTAC	1 cut(s)	285
AfiI	CCNNNNNNNGG	2 cut(s)	405, 458
AflII	CTTAAG	1 cut(s)	653
AgsI	TTSAA	6 cut(s)	94, 191, 356, 389, 670, 714
AjnI	CCWGG	1 cut(s)	111
AluBI	AGCT	3 cut(s)	494, 529, 761
AluI	AGCT	3 cut(s)	494, 529, 761
AoxI	GGCC	3 cut(s)	118, 175, 292
ApeKI	GCWGC	2 cut(s)	435, 758
ApoI	RAATTY	1 cut(s)	197
ArsI	GACNNNNNNTTYG	4 cut(s)	683, 715, 716, 748
Asp700I	GAANNNNTTC	1 cut(s)	709
AspS9I	GGNCC	2 cut(s)	176, 292
AsuHPI	GGTGA	2 cut(s)	68, 143
BaeGI	GKGCMC	1 cut(s)	645
BalI	TGGCCA	1 cut(s)	120
BanI	GGYRCC	1 cut(s)	640
BbvI	GCAGC	2 cut(s)	422, 770
BccI	CCATC	6 cut(s)	58, 129, 313, 447, 452, 637
BciT130I	CCWGG	1 cut(s)	113
BfaI	CTAG	1 cut(s)	771
BfrI	CTTAAG	1 cut(s)	653
BglII	AGATCT	1 cut(s)	649
BisI	GCNGC	2 cut(s)	436, 759
BlsI	GCNGC	2 cut(s)	437, 760
Bme1390I	CCNGG	1 cut(s)	113
BmgT120I	GGNCC	2 cut(s)	176, 292
BmiI	GGNNCC	1 cut(s)	642
BmrFI	CCNGG	1 cut(s)	113
BmsI	GCATC	2 cut(s)	342, 376
Bpu10I	CCTNAGC	1 cut(s)	72
BsaJI	CCNNGG	1 cut(s)	430
BsaXI	ACNNNNNCTCC	2 cut(s)	257, 287
Bsc4I	CCNNNNNNNGG	2 cut(s)	405, 458
Bse1I	ACTGG	3 cut(s)	254, 407, 633
Bse3DI	GCAATG	1 cut(s)	347
BseBI	CCWGG	1 cut(s)	113
BseDI	CCNNGG	1 cut(s)	430
BseGI	GGATG	3 cut(s)	463, 536, 629
BseLI	CCNNNNNNNGG	2 cut(s)	405, 458
BseMI	GCAATG	1 cut(s)	347
BseMII	CTCAG	1 cut(s)	86
BseNI	ACTGG	3 cut(s)	254, 407, 633
BseSI	GKGCMC	1 cut(s)	645
BseXI	GCAGC	2 cut(s)	422, 770
BsgI	GTGCAG	2 cut(s)	64, 151
BshFI	GGCC	3 cut(s)	120, 177, 294
BshNI	GGYRCC	1 cut(s)	640
BslFI	GGGAC	1 cut(s)	737
BslI	CCNNNNNNNGG	2 cut(s)	405, 458
BsmFI	GGGAC	1 cut(s)	737
BsnI	GGCC	3 cut(s)	120, 177, 294
Bsp1286I	GDGCHC	1 cut(s)	645
Bsp143I	GATC	1 cut(s)	649
Bsp19I	CCATGG	1 cut(s)	430
BspACI	CCGC	2 cut(s)	217, 567
BspANI	GGCC	3 cut(s)	120, 177, 294
BspCNI	CTCAG	1 cut(s)	85
BspLI	GGNNCC	1 cut(s)	642
BspT107I	GGYRCC	1 cut(s)	640
BspTI	CTTAAG	1 cut(s)	653
BsrDI	GCAATG	1 cut(s)	347
BsrI	ACTGG	3 cut(s)	254, 407, 633
BssECI	CCNNGG	1 cut(s)	430
BssMI	GATC	1 cut(s)	649
BssT1I	CCWWGG	1 cut(s)	430
Bst2UI	CCWGG	1 cut(s)	113
Bst4CI	ACNGT	1 cut(s)	223
BstAFI	CTTAAG	1 cut(s)	653
BstDEI	CTNAG	2 cut(s)	72, 762
BstDSI	CCRYGG	1 cut(s)	430
BstF5I	GGATG	3 cut(s)	463, 536, 629
BstKTI	GATC	1 cut(s)	652
BstMBI	GATC	1 cut(s)	649
BstMWI	GCNNNNNNNGC	1 cut(s)	174
BstNI	CCWGG	1 cut(s)	113
BstSCI	CCNGG	1 cut(s)	111
BstSLI	GKGCMC	1 cut(s)	645
BstV1I	GCAGC	2 cut(s)	422, 770
BstX2I	RGATCY	1 cut(s)	649
BstYI	RGATCY	1 cut(s)	649
BsuRI	GGCC	3 cut(s)	120, 177, 294
BtgI	CCRYGG	1 cut(s)	430
BtgZI	GCGATG	1 cut(s)	353
BtsCI	GGATG	3 cut(s)	463, 536, 629
BtsI	GCAGTG	1 cut(s)	52
BtsIMutI	CAGTG	2 cut(s)	52, 219
Cfr13I	GGNCC	2 cut(s)	176, 292
Csp6I	GTAC	1 cut(s)	284
CviAII	CATG	3 cut(s)	431, 589, 620
CviQI	GTAC	1 cut(s)	284
DdeI	CTNAG	2 cut(s)	72, 762
DpnI	GATC	1 cut(s)	651
DpnII	GATC	1 cut(s)	649
DraIII	CACNNNGTG	1 cut(s)	225
EaeI	YGGCCR	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	430
Eco57I	CTGAAG	1 cut(s)	664
EcoO109I	RGGNCCY	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	111
EcoT14I	CCWWGG	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	430
FaeI	CATG	3 cut(s)	434, 592, 623
FaqI	GGGAC	1 cut(s)	737
FatI	CATG	3 cut(s)	430, 588, 619
FauI	CCCGC	1 cut(s)	224
Fnu4HI	GCNGC	2 cut(s)	436, 759
FokI	GGATG	3 cut(s)	470, 523, 616
Fsp4HI	GCNGC	2 cut(s)	436, 759
FspBI	CTAG	1 cut(s)	771
GluI	GCNGC	2 cut(s)	436, 759
HaeIII	GGCC	3 cut(s)	120, 177, 294
Hin1II	CATG	3 cut(s)	434, 592, 623
HinfI	GANTC	3 cut(s)	131, 670, 685
HphI	GGTGA	2 cut(s)	68, 143
Hpy166II	GTNNAC	2 cut(s)	151, 345
Hpy188III	TCNNGA	6 cut(s)	74, 140, 211, 305, 682, 689
Hpy8I	GTNNAC	2 cut(s)	151, 345
HpyAV	CCTTC	3 cut(s)	167, 552, 623
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4V	TGCA	4 cut(s)	45, 168, 367, 488
HpyF10VI	GCNNNNNNNGC	1 cut(s)	174
HpyF3I	CTNAG	2 cut(s)	72, 762
Hsp92II	CATG	3 cut(s)	434, 592, 623
Kzo9I	GATC	1 cut(s)	649
LmnI	GCTCC	1 cut(s)	556
Lsp1109I	GCAGC	2 cut(s)	422, 770
LweI	GCATC	2 cut(s)	342, 376
MaeI	CTAG	1 cut(s)	771
MaeIII	GTNAC	3 cut(s)	56, 263, 598
MalI	GATC	1 cut(s)	651
MboI	GATC	1 cut(s)	649
MboII	GAAGA	1 cut(s)	416
MflI	RGATCY	1 cut(s)	649
MhlI	GDGCHC	1 cut(s)	645
MlsI	TGGCCA	1 cut(s)	120
MluCI	AATT	1 cut(s)	197
MluNI	TGGCCA	1 cut(s)	120
MmeI	TCCRAC	1 cut(s)	506
MnlI	CCTC	4 cut(s)	27, 189, 489, 756
Mox20I	TGGCCA	1 cut(s)	120
MroXI	GAANNNNTTC	1 cut(s)	709
MscI	TGGCCA	1 cut(s)	120
MseI	TTAA	2 cut(s)	525, 654
MslI	CAYNNNNRTG	1 cut(s)	338
Msp20I	TGGCCA	1 cut(s)	120
MspCI	CTTAAG	1 cut(s)	653
MspR9I	CCNGG	1 cut(s)	113
MvaI	CCWGG	1 cut(s)	113
MwoI	GCNNNNNNNGC	1 cut(s)	174
NcoI	CCATGG	1 cut(s)	430
NdeII	GATC	1 cut(s)	649
NlaIII	CATG	3 cut(s)	434, 592, 623
NlaIV	GGNNCC	1 cut(s)	642
NmuCI	GTSAC	1 cut(s)	56
PdmI	GAANNNNTTC	1 cut(s)	709
PfeI	GAWTC	3 cut(s)	131, 670, 685
PflMI	CCANNNNNTGG	1 cut(s)	458
PkrI	GCNGC	2 cut(s)	437, 760
Psp6I	CCWGG	1 cut(s)	111
PspGI	CCWGG	1 cut(s)	111
PspN4I	GGNNCC	1 cut(s)	642
PspPI	GGNCC	2 cut(s)	176, 292
PsuI	RGATCY	1 cut(s)	649
RsaI	GTAC	1 cut(s)	285
RsaNI	GTAC	1 cut(s)	284
RseI	CAYNNNNRTG	1 cut(s)	338
SaqAI	TTAA	2 cut(s)	525, 654
SatI	GCNGC	2 cut(s)	436, 759
Sau3AI	GATC	1 cut(s)	649
Sau96I	GGNCC	2 cut(s)	176, 292
ScrFI	CCNGG	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	645
SfaNI	GCATC	2 cut(s)	342, 376
SmiMI	CAYNNNNRTG	1 cut(s)	338
SmlI	CTYRAG	1 cut(s)	653
SmoI	CTYRAG	1 cut(s)	653
Sse9I	AATT	1 cut(s)	197
SsiI	CCGC	2 cut(s)	217, 567
SspMI	CTAG	1 cut(s)	771
StyD4I	CCNGG	1 cut(s)	111
StyI	CCWWGG	1 cut(s)	430
TaaI	ACNGT	1 cut(s)	223
TaqI	TCGA	1 cut(s)	181
TasI	AATT	1 cut(s)	197
TfiI	GAWTC	3 cut(s)	131, 670, 685
Tru1I	TTAA	2 cut(s)	525, 654
Tru9I	TTAA	2 cut(s)	525, 654
TscAI	CASTG	2 cut(s)	52, 226
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	2 cut(s)	435, 758
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	2 cut(s)	210, 605
TspGWI	ACGGA	2 cut(s)	185, 498
TspRI	CASTG	2 cut(s)	52, 226
Van91I	CCANNNNNTGG	1 cut(s)	458
Vha464I	CTTAAG	1 cut(s)	653
XapI	RAATTY	1 cut(s)	197
XmnI	GAANNNNTTC	1 cut(s)	709
XspI	CTAG	1 cut(s)	771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.