Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001087

Physical Location & Seq

Genomic Coordinates Forward (+)

4811599 .. 4815556

Gene Structure 3958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G095700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGTTGTGCAGGACTTCAAAGTTGATTTGAATAAAGCCCTCGTATTCCAGGTTGGCCATCTTGGAGAAGCATACCAGGAGTGGGTTCACCAGCCGATTGTTTGCAAGGAAGGCCCTCGATTTTTTGAAAATGAATTTTGGGAGTTCTTGACCCGCACAGTGTGGTGGGCAGTTCCTGTCATATGGCTGCCAGTCGTGTTCTATTCTATCTCCATGTCCGTACGGATGGGCCATGGATTTCCTGAAATAGCTCTGATGGTTTTCGCTGGCATTTTCGTGTGGACATTGCTTGAATACACGTTGCACCGCTTTCTTTTCCACATTGAAACAAAGAGCTACTGGGGGAACACTGCACATTATCTTCTTCATGGCTGCCACCATAAGCACCCAATGGATGGCCTGCGACTTGTTTTCCCTCCTGCTGCGACAGCTGTTTTATGTGTTCCATTCTGGAACTTGGTGAAGCTGATTTCCGTTCCTTCTGTCACTCCTGCTTTGTTTGGAGGTGGTTTATTGGGTTATGTGATGTATGATTGTACCCATTACTATCTCCATCATGGTCAGCCATCAAGTGACGTACCCCGAAACCTGAAGAAATACCACTTGAATCATCACTTCAGGATCCAAGATAAAGGCTTTGGAATAACTTCAAGTATATGGGACAGGGTGTTTGGAACACTTCCTCAATCAAAAGCAGCCAAAAAGGACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

238

Amino Acids

27.46

Weight (kDa)

8.83

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34770 AT4G20870 AT4G20870
fragaria_vesca	FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10760 FvH4_3g10760 FvH4_3g10760 FvH4_3g10780 FvH4_3g10780 FvH4_3g10780
malus_domestica	MD05G1268900.v1.1
prunus_persica	Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1
pyrus_communis	pycom05g25190 pycom10g20540
rosa_chinensis	RchiOBHm_Chr5g0017441 RchiOBHm_Chr5g0017481 RchiOBHm_Chr5g0017491 RchiOBHm_Chr5g0017501
rosa_laevigata	RLG00000032287 RLG00000032288 RLG00000032292 RLG00000032294
rosa_multiflora	Rmu_sc0007392.1_g000004 Rmu_sc0013973.1_g000006
rosa_roxburghii	Rroxscaffold_1G00059930 Rroxscaffold_1G00059950
rosa_rugosa	Rorug05G0035400 Rorug05G0035500 Rorug05G0035800 Rorug05G0035900 Rorug05G0036000 Rorug05G0036100 Rorug05G0036200 Rorug05G0036300 Rorug05G0036400 Rorug05G0036500 Rorug05G0036600
rosa_samantha	Rh5AG130200 Rh5AG130400 Rh5BG128400 Rh5BG128600 Rh5CG140900 Rh5DG130400 Rh5DG130600 Rh5DG130700 Rh5DG130800 Rh7BG398200
rosa_wichuraiana	Rw5G011240 Rw5G011250 Rw5G011260 Rw5G011270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	395
AciI	CCGC	2 cut(s)	154, 307
AclWI	GGATC	2 cut(s)	616, 629
AcoI	YGGCCR	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	134
AcuI	CTGAAG	2 cut(s)	601, 611
AdeI	CACNNNGTG	1 cut(s)	162
AfaI	GTAC	3 cut(s)	222, 538, 579
AfiI	CCNNNNNNNGG	2 cut(s)	82, 395
AflIII	ACRYGT	1 cut(s)	297
AgsI	TTSAA	7 cut(s)	19, 31, 128, 293, 326, 607, 651
AjnI	CCWGG	2 cut(s)	48, 75
AluBI	AGCT	4 cut(s)	251, 336, 431, 466
AluI	AGCT	4 cut(s)	251, 336, 431, 466
AlwI	GGATC	2 cut(s)	616, 629
AlwNI	CAGNNNCTG	1 cut(s)	176
AoxI	GGCC	4 cut(s)	55, 112, 229, 397
ApeKI	GCWGC	4 cut(s)	187, 372, 422, 695
ApoI	RAATTY	1 cut(s)	134
ArsI	GACNNNNNNTTYG	2 cut(s)	653, 685
Asp700I	GAANNNNTTC	1 cut(s)	646
AspS9I	GGNCC	2 cut(s)	113, 229
AsuHPI	GGTGA	2 cut(s)	80, 472
BalI	TGGCCA	1 cut(s)	57
BamHI	GGATCC	1 cut(s)	621
BbvI	GCAGC	4 cut(s)	174, 359, 409, 707
BccI	CCATC	6 cut(s)	66, 220, 250, 389, 561, 574
BciT130I	CCWGG	2 cut(s)	50, 77
BisI	GCNGC	4 cut(s)	188, 373, 423, 696
BlsI	GCNGC	4 cut(s)	189, 374, 424, 697
Bme1390I	CCNGG	2 cut(s)	50, 77
BmgT120I	GGNCC	2 cut(s)	113, 229
BmiI	GGNNCC	1 cut(s)	623
BmrFI	CCNGG	2 cut(s)	50, 77
BmrI	ACTGGG	1 cut(s)	349
BmuI	ACTGGG	1 cut(s)	349
BsaJI	CCNNGG	1 cut(s)	232
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 395
Bse1I	ACTGG	2 cut(s)	191, 344
Bse3DI	GCAATG	1 cut(s)	284
BseBI	CCWGG	2 cut(s)	50, 77
BseDI	CCNNGG	1 cut(s)	232
BseGI	GGATG	2 cut(s)	231, 400
BseLI	CCNNNNNNNGG	2 cut(s)	82, 395
BseMI	GCAATG	1 cut(s)	284
BseNI	ACTGG	2 cut(s)	191, 344
BseXI	GCAGC	4 cut(s)	174, 359, 409, 707
BsgI	GTGCAG	2 cut(s)	29, 336
BshFI	GGCC	4 cut(s)	57, 114, 231, 399
BsiWI	CGTACG	1 cut(s)	220
BslFI	GGGAC	1 cut(s)	674
BslI	CCNNNNNNNGG	2 cut(s)	82, 395
BsmFI	GGGAC	1 cut(s)	674
BsnI	GGCC	4 cut(s)	57, 114, 231, 399
Bsp143I	GATC	1 cut(s)	621
Bsp19I	CCATGG	1 cut(s)	232
BspACI	CCGC	2 cut(s)	154, 307
BspANI	GGCC	4 cut(s)	57, 114, 231, 399
BspLI	GGNNCC	1 cut(s)	623
BspPI	GGATC	2 cut(s)	616, 629
BsrDI	GCAATG	1 cut(s)	284
BsrI	ACTGG	2 cut(s)	191, 344
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	1 cut(s)	621
BssT1I	CCWWGG	1 cut(s)	232
Bst2UI	CCWGG	2 cut(s)	50, 77
Bst4CI	ACNGT	1 cut(s)	160
BstC8I	GCNNGC	2 cut(s)	268, 401
BstDSI	CCRYGG	1 cut(s)	232
BstF5I	GGATG	2 cut(s)	231, 400
BstKTI	GATC	1 cut(s)	624
BstMBI	GATC	1 cut(s)	621
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 428
BstNI	CCWGG	2 cut(s)	50, 77
BstSCI	CCNGG	2 cut(s)	48, 75
BstV1I	GCAGC	4 cut(s)	174, 359, 409, 707
BstX2I	RGATCY	1 cut(s)	621
BstYI	RGATCY	1 cut(s)	621
BsuRI	GGCC	4 cut(s)	57, 114, 231, 399
BtgI	CCRYGG	1 cut(s)	232
BtsCI	GGATG	2 cut(s)	231, 400
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	2 cut(s)	165, 348
Cac8I	GCNNGC	2 cut(s)	268, 401
CaiI	CAGNNNCTG	1 cut(s)	176
Cfr13I	GGNCC	2 cut(s)	113, 229
Csp6I	GTAC	3 cut(s)	221, 537, 578
CviAII	CATG	4 cut(s)	214, 233, 368, 557
CviQI	GTAC	3 cut(s)	221, 537, 578
DpnI	GATC	1 cut(s)	623
DpnII	GATC	1 cut(s)	621
DraIII	CACNNNGTG	1 cut(s)	162
EaeI	YGGCCR	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	232
Eco57I	CTGAAG	2 cut(s)	601, 611
EcoO109I	RGGNCCY	1 cut(s)	113
EcoRII	CCWGG	2 cut(s)	48, 75
EcoT14I	CCWWGG	1 cut(s)	232
ErhI	CCWWGG	1 cut(s)	232
FaeI	CATG	4 cut(s)	217, 236, 371, 560
FaqI	GGGAC	1 cut(s)	674
FatI	CATG	4 cut(s)	213, 232, 367, 556
FauI	CCCGC	1 cut(s)	161
FauNDI	CATATG	1 cut(s)	182
Fnu4HI	GCNGC	4 cut(s)	188, 373, 423, 696
FokI	GGATG	2 cut(s)	238, 407
Fsp4HI	GCNGC	4 cut(s)	188, 373, 423, 696
GluI	GCNGC	4 cut(s)	188, 373, 423, 696
HaeIII	GGCC	4 cut(s)	57, 114, 231, 399
Hin1II	CATG	4 cut(s)	217, 236, 371, 560
HinfI	GANTC	1 cut(s)	607
HphI	GGTGA	2 cut(s)	80, 472
Hpy166II	GTNNAC	2 cut(s)	88, 282
Hpy188I	TCNGA	1 cut(s)	255
Hpy188III	TCNNGA	4 cut(s)	148, 242, 451, 619
Hpy8I	GTNNAC	2 cut(s)	88, 282
HpyAV	CCTTC	2 cut(s)	104, 489
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4IV	ACGT	2 cut(s)	299, 576
HpyCH4V	TGCA	4 cut(s)	10, 105, 304, 353
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 428
HpySE526I	ACGT	2 cut(s)	299, 576
Hsp92II	CATG	4 cut(s)	217, 236, 371, 560
Kzo9I	GATC	1 cut(s)	621
Lsp1109I	GCAGC	4 cut(s)	174, 359, 409, 707
MaeII	ACGT	2 cut(s)	299, 576
MaeIII	GTNAC	2 cut(s)	484, 572
MalI	GATC	1 cut(s)	623
MboI	GATC	1 cut(s)	621
MboII	GAAGA	3 cut(s)	353, 356, 604
MflI	RGATCY	1 cut(s)	621
MlsI	TGGCCA	1 cut(s)	57
MluCI	AATT	1 cut(s)	134
MluNI	TGGCCA	1 cut(s)	57
MnlI	CCTC	5 cut(s)	50, 126, 426, 497, 693
Mox20I	TGGCCA	1 cut(s)	57
MroXI	GAANNNNTTC	1 cut(s)	646
MscI	TGGCCA	1 cut(s)	57
MslI	CAYNNNNRTG	1 cut(s)	275
Msp20I	TGGCCA	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	431
MspR9I	CCNGG	2 cut(s)	50, 77
MvaI	CCWGG	2 cut(s)	50, 77
MwoI	GCNNNNNNNGC	2 cut(s)	111, 428
NcoI	CCATGG	1 cut(s)	232
NdeI	CATATG	1 cut(s)	182
NdeII	GATC	1 cut(s)	621
NlaIII	CATG	4 cut(s)	217, 236, 371, 560
NlaIV	GGNNCC	1 cut(s)	623
NmuCI	GTSAC	2 cut(s)	484, 572
PdmI	GAANNNNTTC	1 cut(s)	646
PfeI	GAWTC	1 cut(s)	607
Pfl23II	CGTACG	1 cut(s)	220
PflMI	CCANNNNNTGG	1 cut(s)	395
PkrI	GCNGC	4 cut(s)	189, 374, 424, 697
Psp6I	CCWGG	2 cut(s)	48, 75
PspGI	CCWGG	2 cut(s)	48, 75
PspLI	CGTACG	1 cut(s)	220
PspN4I	GGNNCC	1 cut(s)	623
PspPI	GGNCC	2 cut(s)	113, 229
PstNI	CAGNNNCTG	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	621
PvuII	CAGCTG	1 cut(s)	431
RsaI	GTAC	3 cut(s)	222, 538, 579
RsaNI	GTAC	3 cut(s)	221, 537, 578
RseI	CAYNNNNRTG	1 cut(s)	275
SatI	GCNGC	4 cut(s)	188, 373, 423, 696
Sau3AI	GATC	1 cut(s)	621
Sau96I	GGNCC	2 cut(s)	113, 229
ScrFI	CCNGG	2 cut(s)	50, 77
SetI	ASST	9 cut(s)	54, 253, 302, 338, 433, 468, 508, 579, 591
SmiMI	CAYNNNNRTG	1 cut(s)	275
Sse9I	AATT	1 cut(s)	134
SsiI	CCGC	2 cut(s)	154, 307
StyD4I	CCNGG	2 cut(s)	48, 75
StyI	CCWWGG	1 cut(s)	232
TaaI	ACNGT	1 cut(s)	160
TaiI	ACGT	2 cut(s)	302, 579
TaqI	TCGA	1 cut(s)	118
TasI	AATT	1 cut(s)	134
TfiI	GAWTC	1 cut(s)	607
TscAI	CASTG	2 cut(s)	165, 355
TseFI	GTSAC	2 cut(s)	484, 572
TseI	GCWGC	4 cut(s)	187, 372, 422, 695
Tsp45I	GTSAC	2 cut(s)	484, 572
TspDTI	ATGAA	2 cut(s)	147, 356
TspGWI	ACGGA	3 cut(s)	208, 238, 463
TspRI	CASTG	2 cut(s)	165, 355
Van91I	CCANNNNNTGG	1 cut(s)	395
XapI	RAATTY	1 cut(s)	134
XmnI	GAANNNNTTC	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.