Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001087

Physical Location & Seq

Genomic Coordinates Forward (+)

12651983 .. 12653854

Gene Structure 1872 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG130700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGTGGGTGATTCCACTTGTTTGGCTGCCTGTAGCATCCTGGTTAGTCTCCATGTCTTTTCGAATGGGGCTTACTTTAGCTCAGGTACCTTTAGCAGTGGTTGGTGGCATCTTTATTTGGACACTGTTGGAGTATGGTTTGCATCGCTTCCCTCTTCATATGAAATCAACAAGCTATTGTTTTGGAATATGTTTAGGCTTTTATCACCTCCATCAGTTGCTCCGGCTTTGTTTGGAGGAACCTTACTGGGATATGTAGCATATGATGTCACTCATTACTACCTGCACCATGGGAAGCCATACAAAAGATTGACTCAAGATCTGAAGTGTAGAGGAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016491 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071704 GO:0080132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5 FA_hydroxylase

Protein Analysis

113

Amino Acids

12.62

Weight (kDa)

8.48

Isoelectric Point (pI)

46.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34770 AT4G20870 AT4G20870
fragaria_vesca	FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10760 FvH4_3g10760 FvH4_3g10760 FvH4_3g10780 FvH4_3g10780 FvH4_3g10780
malus_domestica	MD05G1268900.v1.1
prunus_persica	Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1
pyrus_communis	pycom05g25190 pycom10g20540
rosa_chinensis	RchiOBHm_Chr5g0017441 RchiOBHm_Chr5g0017481 RchiOBHm_Chr5g0017491 RchiOBHm_Chr5g0017501
rosa_laevigata	RLG00000032287 RLG00000032288 RLG00000032292 RLG00000032294
rosa_multiflora	Rmu_sc0007392.1_g000004 Rmu_sc0013973.1_g000006
rosa_roxburghii	Rroxscaffold_1G00059930 Rroxscaffold_1G00059950
rosa_rugosa	Rorug05G0035400 Rorug05G0035500 Rorug05G0035800 Rorug05G0035900 Rorug05G0036000 Rorug05G0036100 Rorug05G0036200 Rorug05G0036300 Rorug05G0036400 Rorug05G0036500 Rorug05G0036600
rosa_samantha	Rh5AG130200 Rh5AG130400 Rh5BG128400 Rh5BG128600 Rh5CG140900 Rh5DG130400 Rh5DG130600 Rh5DG130700 Rh5DG130800 Rh7BG398200
rosa_wichuraiana	Rw5G011240 Rw5G011250 Rw5G011260 Rw5G011270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	291
Acc65I	GGTACC	1 cut(s)	86
AccB1I	GGYRCC	1 cut(s)	86
AfaI	GTAC	1 cut(s)	88
AjnI	CCWGG	1 cut(s)	39
AluBI	AGCT	2 cut(s)	81, 175
AluI	AGCT	2 cut(s)	81, 175
Alw26I	GTCTC	1 cut(s)	53
ApeKI	GCWGC	1 cut(s)	26
Asp718I	GGTACC	1 cut(s)	86
AsuHPI	GGTGA	2 cut(s)	20, 198
AsuII	TTCGAA	1 cut(s)	62
BanI	GGYRCC	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	13
BccI	CCATC	1 cut(s)	220
BciT130I	CCWGG	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	53
BfmI	CTRYAG	1 cut(s)	31
BfuAI	ACCTGC	1 cut(s)	291
BglII	AGATCT	1 cut(s)	319
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
Bme1390I	CCNGG	1 cut(s)	41
BmiI	GGNNCC	2 cut(s)	88, 241
BmrFI	CCNGG	1 cut(s)	41
BmrI	ACTGGG	1 cut(s)	257
BmsI	GCATC	3 cut(s)	45, 118, 152
BmuI	ACTGGG	1 cut(s)	257
Bpu10I	CCTNAGC	1 cut(s)	82
Bpu14I	TTCGAA	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	289
Bse1I	ACTGG	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	289
BseGI	GGATG	1 cut(s)	36
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	1 cut(s)	252
BseXI	GCAGC	1 cut(s)	13
BsgI	GTGCAG	1 cut(s)	269
BshNI	GGYRCC	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	224
BsmAI	GTCTC	1 cut(s)	53
Bsp119I	TTCGAA	1 cut(s)	62
Bsp143I	GATC	1 cut(s)	319
Bsp19I	CCATGG	1 cut(s)	289
BspCNI	CTCAG	1 cut(s)	95
BspLI	GGNNCC	2 cut(s)	88, 241
BspMI	ACCTGC	1 cut(s)	291
BspT104I	TTCGAA	1 cut(s)	62
BspT107I	GGYRCC	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	252
BssECI	CCNNGG	1 cut(s)	289
BssMI	GATC	1 cut(s)	319
BssT1I	CCWWGG	1 cut(s)	289
Bst2UI	CCWGG	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	1 cut(s)	160
BstBI	TTCGAA	1 cut(s)	62
BstDEI	CTNAG	1 cut(s)	82
BstDSI	CCRYGG	1 cut(s)	289
BstF5I	GGATG	1 cut(s)	36
BstKTI	GATC	1 cut(s)	322
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	1 cut(s)	319
BstNI	CCWGG	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	39
BstSFI	CTRYAG	1 cut(s)	31
BstV1I	GCAGC	1 cut(s)	13
BstX2I	RGATCY	1 cut(s)	319
BstXI	CCANNNNNNTGG	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	319
BtgI	CCRYGG	1 cut(s)	289
BtgZI	GCGATG	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	36
BtsI	GCAGTG	1 cut(s)	103
BtsIMutI	CAGTG	2 cut(s)	103, 123
BveI	ACCTGC	1 cut(s)	291
Csp6I	GTAC	1 cut(s)	87
CviAII	CATG	2 cut(s)	53, 290
CviJI	RGCY	7 cut(s)	26, 71, 81, 175, 199, 227, 298
CviKI_1	RGCY	7 cut(s)	26, 71, 81, 175, 199, 227, 298
CviQI	GTAC	1 cut(s)	87
DdeI	CTNAG	1 cut(s)	82
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
Eam1104I	CTCTTC	1 cut(s)	160
EarI	CTCTTC	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	289
ErhI	CCWWGG	1 cut(s)	289
FaeI	CATG	2 cut(s)	56, 293
FatI	CATG	2 cut(s)	52, 289
FauNDI	CATATG	2 cut(s)	160, 262
Fnu4HI	GCNGC	1 cut(s)	27
FokI	GGATG	1 cut(s)	23
Fsp4HI	GCNGC	1 cut(s)	27
GluI	GCNGC	1 cut(s)	27
HapII	CCGG	1 cut(s)	224
Hin1II	CATG	2 cut(s)	56, 293
HinfI	GANTC	2 cut(s)	11, 313
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	2 cut(s)	20, 198
Hpy188I	TCNGA	1 cut(s)	324
Hpy188III	TCNNGA	1 cut(s)	317
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4V	TGCA	2 cut(s)	143, 286
HpyF3I	CTNAG	1 cut(s)	82
Hsp92II	CATG	2 cut(s)	56, 293
KpnI	GGTACC	1 cut(s)	90
Kzo9I	GATC	1 cut(s)	319
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	7 cut(s)	26, 43, 53, 69, 233, 237, 296
Lsp1109I	GCAGC	1 cut(s)	13
LweI	GCATC	3 cut(s)	45, 118, 152
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	1 cut(s)	321
MboI	GATC	1 cut(s)	319
MboII	GAAGA	1 cut(s)	147
MflI	RGATCY	1 cut(s)	319
MlyI	GAGTC	1 cut(s)	307
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	4 cut(s)	163, 219, 230, 326
MspI	CCGG	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	41
MvaI	CCWGG	1 cut(s)	41
NcoI	CCATGG	1 cut(s)	289
NdeI	CATATG	2 cut(s)	160, 262
NdeII	GATC	1 cut(s)	319
NlaIII	CATG	2 cut(s)	56, 293
NlaIV	GGNNCC	2 cut(s)	88, 241
NmuCI	GTSAC	1 cut(s)	268
NspV	TTCGAA	1 cut(s)	62
PfeI	GAWTC	1 cut(s)	11
PkrI	GCNGC	1 cut(s)	28
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
Psp6I	CCWGG	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	39
PspN4I	GGNNCC	2 cut(s)	88, 241
PsuI	RGATCY	1 cut(s)	319
RsaI	GTAC	1 cut(s)	88
RsaNI	GTAC	1 cut(s)	87
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	1 cut(s)	319
SchI	GAGTC	1 cut(s)	307
ScrFI	CCNGG	1 cut(s)	41
SetI	ASST	7 cut(s)	83, 88, 92, 177, 211, 245, 285
SfaNI	GCATC	3 cut(s)	45, 118, 152
SfcI	CTRYAG	1 cut(s)	31
SfuI	TTCGAA	1 cut(s)	62
SmlI	CTYRAG	1 cut(s)	315
SmoI	CTYRAG	1 cut(s)	315
StyD4I	CCNGG	1 cut(s)	39
StyI	CCWWGG	1 cut(s)	289
TaaI	ACNGT	1 cut(s)	127
TaqI	TCGA	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	11
TscAI	CASTG	2 cut(s)	103, 130
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	2 cut(s)	147, 177
TspRI	CASTG	2 cut(s)	103, 130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.