Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001087

Physical Location & Seq

Genomic Coordinates Reverse (-)

2632315 .. 2633719

Gene Structure 1405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0036400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGAGGTTCAGATTAGGATTGATAGTCAGCTTCAATCCTCGAAGCAAGGTCTAAACGGGATTGCAGGGCTGCTCCAATCCTATACTCAAAATACTACAAATGAGCTTGTTTTGGCTAAAATAGAAGGCTCCATTCCAGTTGAGCATGTGAGTGATGCTGGTGCTACTCAAGAAAATGCATTTGCTGAGGATATATGTAATTGTGAGAATTCATTAGAGATGGTGGAAGGCAGCTCTCCTACAGCCACGACTGCTATTGCTTCTCTTACATCGCTCTCTAATTTGTTTGAAGAGATAGAACATGAGGGGGTGGAAAGGTTCTCTACTGGAATCTACGGGGCATTGCTAATGACCCCACTCAAGATGTTCTTACGAAGTTTGTTCGGGATCATAACCCAGATGTATTATGTATTTCTCCCTAACTTGTGGGTTTTGTGCAAACCTTCTCTTCTTCATGAGGTTACAATAGTTTCAAGTACTGATCAGCAGATCTCTATTGCAGTTGTTTTGGACTCAGTCAATTGTGTTCTATCTCCCGTTTATGCACGTACATCTATGGAGGGTCGTCGTCGTTTATGGACAGACTTAGCTTATATTAAAGATAACTTTTTTTCGGGCCCTTGGCTTGTTTTTGGTGACTTTAATGCCATTCTTGGGGCTTACGAGAAAAAGGGTGGAGCTCCGGTTTGTAGACGTTCATGTGAGGAGTTCCAAGCTATGTCTGATGTCTGTGAACTTATTCATGTTGATACACACGGGGCTGAATTCACATGGGTTCGTAGACGTGGGCTAAGAGGAAATGTTGAAGAGAGACTTGATAGATGTCTTGCAAATTTGTCTTGGATGGATAGTTGGGATACTTTTGATTGTAGTACATTGCCCAGGTTATGTTCTGATCATAATCCACTTCTTATGTCTTTCTCTAATGCTTTTGGAGCTCGTCAGAGTTTCTTTAGATTTCGAAGGATGTGGTTGGAGCATGGGGAGTTTCATGCCTTTGTCAAGCAATGTTGGGACTCAGTTGACTCTGACCTTGCTGAGTTGGTTTCTATTCAACAAAGTATATCTTCTATAGGGGGTTCTGATGCGGATTTTGCTAAGGAGCGTGAGCTTCAGGCTAATTTGTCAGAATCTTTACGTTTGCAAGAGCTGTTTTGGAAGGAAAAATCTAGTTTGCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

393

Amino Acids

44.26

Weight (kDa)

4.95

Isoelectric Point (pI)

50.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34770 AT4G20870 AT4G20870
fragaria_vesca	FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10760 FvH4_3g10760 FvH4_3g10760 FvH4_3g10780 FvH4_3g10780 FvH4_3g10780
malus_domestica	MD05G1268900.v1.1
prunus_persica	Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1
pyrus_communis	pycom05g25190 pycom10g20540
rosa_chinensis	RchiOBHm_Chr5g0017441 RchiOBHm_Chr5g0017481 RchiOBHm_Chr5g0017491 RchiOBHm_Chr5g0017501
rosa_laevigata	RLG00000032287 RLG00000032288 RLG00000032292 RLG00000032294
rosa_multiflora	Rmu_sc0007392.1_g000004 Rmu_sc0013973.1_g000006
rosa_roxburghii	Rroxscaffold_1G00059930 Rroxscaffold_1G00059950
rosa_rugosa	Rorug05G0035400 Rorug05G0035500 Rorug05G0035800 Rorug05G0035900 Rorug05G0036000 Rorug05G0036100 Rorug05G0036200 Rorug05G0036300 Rorug05G0036400 Rorug05G0036500 Rorug05G0036600
rosa_samantha	Rh5AG130200 Rh5AG130400 Rh5BG128400 Rh5BG128600 Rh5CG140900 Rh5DG130400 Rh5DG130600 Rh5DG130700 Rh5DG130800 Rh7BG398200
rosa_wichuraiana	Rw5G011240 Rw5G011250 Rw5G011260 Rw5G011270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	691, 781
AciI	CCGC	1 cut(s)	1088
AclWI	GGATC	1 cut(s)	395
AcsI	RAATTY	3 cut(s)	208, 764, 832
AcuI	CTGAAG	1 cut(s)	1097
AfaI	GTAC	3 cut(s)	478, 550, 874
AfiI	CCNNNNNNNGG	1 cut(s)	654
AgsI	TTSAA	5 cut(s)	35, 290, 474, 806, 1055
AjiI	CACGTC	1 cut(s)	785
AjnI	CCWGG	1 cut(s)	881
AluBI	AGCT	9 cut(s)	31, 106, 234, 590, 680, 716, 938, 1111, 1150
AluI	AGCT	9 cut(s)	31, 106, 234, 590, 680, 716, 938, 1111, 1150
Alw21I	GWGCWC	2 cut(s)	682, 940
Alw26I	GTCTC	1 cut(s)	805
AlwI	GGATC	1 cut(s)	395
AoxI	GGCC	1 cut(s)	616
ApaI	GGGCCC	1 cut(s)	620
ApeKI	GCWGC	2 cut(s)	70, 231
ApoI	RAATTY	3 cut(s)	208, 764, 832
Asp700I	GAANNNNTTC	1 cut(s)	738
AspS9I	GGNCC	2 cut(s)	616, 617
AsuHPI	GGTGA	1 cut(s)	647
AsuII	TTCGAA	1 cut(s)	961
BaeGI	GKGCMC	1 cut(s)	620
BanII	GRGCYC	3 cut(s)	620, 682, 940
Bbv12I	GWGCWC	2 cut(s)	682, 940
BbvCI	CCTCAGC	1 cut(s)	186
BbvI	GCAGC	2 cut(s)	57, 243
BccI	CCATC	2 cut(s)	214, 838
BciT130I	CCWGG	1 cut(s)	883
BciVI	GTATCC	1 cut(s)	850
BclI	TGATCA	2 cut(s)	481, 895
BcoDI	GTCTC	1 cut(s)	805
BfaI	CTAG	1 cut(s)	1170
BfmI	CTRYAG	2 cut(s)	240, 1071
BfuI	GTATCC	1 cut(s)	850
BglII	AGATCT	1 cut(s)	489
BisI	GCNGC	2 cut(s)	71, 232
BlsI	GCNGC	2 cut(s)	72, 233
BmcAI	AGTACT	1 cut(s)	478
Bme1390I	CCNGG	1 cut(s)	883
BmgBI	CACGTC	1 cut(s)	785
BmgT120I	GGNCC	2 cut(s)	616, 617
BmiI	GGNNCC	2 cut(s)	130, 618
BmrFI	CCNGG	1 cut(s)	883
BmsI	GCATC	2 cut(s)	145, 1075
Bpu10I	CCTNAGC	2 cut(s)	186, 1098
Bpu14I	TTCGAA	1 cut(s)	961
BpuEI	CTTGAG	2 cut(s)	153, 344
BsaAI	YACGTR	1 cut(s)	548
BsaBI	GATNNNNATC	1 cut(s)	900
BsaJI	CCNNGG	2 cut(s)	620, 881
BsaWI	WCCGGW	1 cut(s)	682
BsaXI	ACNNNNNCTCC	2 cut(s)	669, 699
Bsc4I	CCNNNNNNNGG	1 cut(s)	654
Bse1I	ACTGG	2 cut(s)	137, 331
Bse3DI	GCAATG	3 cut(s)	341, 875, 1013
Bse8I	GATNNNNATC	1 cut(s)	900
BseBI	CCWGG	1 cut(s)	883
BseDI	CCNNGG	2 cut(s)	620, 881
BseGI	GGATG	2 cut(s)	849, 972
BseJI	GATNNNNATC	1 cut(s)	900
BseLI	CCNNNNNNNGG	1 cut(s)	654
BseMI	GCAATG	3 cut(s)	341, 875, 1013
BseMII	CTCAG	4 cut(s)	177, 528, 1029, 1032
BseNI	ACTGG	2 cut(s)	137, 331
BseRI	GAGGAG	1 cut(s)	719
BseSI	GKGCMC	1 cut(s)	620
BseXI	GCAGC	2 cut(s)	57, 243
BshFI	GGCC	1 cut(s)	618
BsiHKAI	GWGCWC	2 cut(s)	682, 940
BsiSI	CCGG	1 cut(s)	683
BslFI	GGGAC	1 cut(s)	1028
BslI	CCNNNNNNNGG	1 cut(s)	654
BsmAI	GTCTC	1 cut(s)	805
BsmFI	GGGAC	1 cut(s)	1028
BsnI	GGCC	1 cut(s)	618
Bsp119I	TTCGAA	1 cut(s)	961
Bsp120I	GGGCCC	1 cut(s)	616
Bsp1286I	GDGCHC	3 cut(s)	620, 682, 940
Bsp143I	GATC	4 cut(s)	387, 481, 489, 895
BspACI	CCGC	1 cut(s)	1088
BspANI	GGCC	1 cut(s)	618
BspCNI	CTCAG	4 cut(s)	178, 527, 1030, 1031
BspHI	TCATGA	1 cut(s)	454
BspLI	GGNNCC	2 cut(s)	130, 618
BspPI	GGATC	1 cut(s)	395
BspT104I	TTCGAA	1 cut(s)	961
BsrDI	GCAATG	3 cut(s)	341, 875, 1013
BsrI	ACTGG	2 cut(s)	137, 331
BssECI	CCNNGG	2 cut(s)	620, 881
BssMI	GATC	4 cut(s)	387, 481, 489, 895
BssT1I	CCWWGG	1 cut(s)	620
Bst2UI	CCWGG	1 cut(s)	883
Bst6I	CTCTTC	3 cut(s)	285, 453, 801
BstBAI	YACGTR	1 cut(s)	548
BstBI	TTCGAA	1 cut(s)	961
BstDEI	CTNAG	7 cut(s)	186, 514, 586, 791, 1018, 1038, 1098
BstF5I	GGATG	2 cut(s)	849, 972
BstKTI	GATC	4 cut(s)	390, 484, 492, 898
BstMAI	GTCTC	1 cut(s)	805
BstMBI	GATC	4 cut(s)	387, 481, 489, 895
BstMWI	GCNNNNNNNGC	3 cut(s)	251, 935, 1094
BstNI	CCWGG	1 cut(s)	883
BstNSI	RCATGY	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	881
BstSFI	CTRYAG	2 cut(s)	240, 1071
BstSLI	GKGCMC	1 cut(s)	620
BstV1I	GCAGC	2 cut(s)	57, 243
BstX2I	RGATCY	1 cut(s)	489
BstYI	RGATCY	1 cut(s)	489
BsuI	GTATCC	1 cut(s)	850
BsuRI	GGCC	1 cut(s)	618
BtgZI	GCGATG	1 cut(s)	255
BtrI	CACGTC	1 cut(s)	785
BtsCI	GGATG	2 cut(s)	849, 972
CciI	TCATGA	1 cut(s)	454
Cfr13I	GGNCC	2 cut(s)	616, 617
Csp6I	GTAC	3 cut(s)	477, 549, 873
CviAII	CATG	8 cut(s)	146, 302, 455, 699, 743, 771, 980, 992
CviQI	GTAC	3 cut(s)	477, 549, 873
DdeI	CTNAG	7 cut(s)	186, 514, 586, 791, 1018, 1038, 1098
DpnI	GATC	4 cut(s)	389, 483, 491, 897
DpnII	GATC	4 cut(s)	387, 481, 489, 895
Eam1104I	CTCTTC	3 cut(s)	285, 453, 801
EarI	CTCTTC	3 cut(s)	285, 453, 801
Ecl136II	GAGCTC	2 cut(s)	680, 938
Eco130I	CCWWGG	1 cut(s)	620
Eco24I	GRGCYC	3 cut(s)	620, 682, 940
Eco53kI	GAGCTC	2 cut(s)	680, 938
Eco57I	CTGAAG	1 cut(s)	1097
EcoICRI	GAGCTC	2 cut(s)	680, 938
EcoO109I	RGGNCCY	1 cut(s)	617
EcoRI	GAATTC	2 cut(s)	208, 764
EcoRII	CCWGG	1 cut(s)	881
EcoT14I	CCWWGG	1 cut(s)	620
EcoT22I	ATGCAT	1 cut(s)	181
EcoT38I	GRGCYC	3 cut(s)	620, 682, 940
ErhI	CCWWGG	1 cut(s)	620
FaeI	CATG	8 cut(s)	149, 305, 458, 702, 746, 774, 983, 995
FalI	AAGNNNNNCTT	6 cut(s)	353, 385, 798, 830, 1051, 1083
FaqI	GGGAC	1 cut(s)	1028
FatI	CATG	8 cut(s)	145, 301, 454, 698, 742, 770, 979, 991
FbaI	TGATCA	2 cut(s)	481, 895
FblI	GTMKAC	2 cut(s)	691, 781
Fnu4HI	GCNGC	2 cut(s)	71, 232
FokI	GGATG	2 cut(s)	856, 979
FriOI	GRGCYC	3 cut(s)	620, 682, 940
Fsp4HI	GCNGC	2 cut(s)	71, 232
FspBI	CTAG	1 cut(s)	1170
GluI	GCNGC	2 cut(s)	71, 232
HaeIII	GGCC	1 cut(s)	618
HapII	CCGG	1 cut(s)	683
Hin1II	CATG	8 cut(s)	149, 305, 458, 702, 746, 774, 983, 995
HincII	GTYRAC	1 cut(s)	1024
HindII	GTYRAC	1 cut(s)	1024
HinfI	GANTC	5 cut(s)	330, 512, 1016, 1025, 1130
HpaII	CCGG	1 cut(s)	683
HphI	GGTGA	1 cut(s)	647
Hpy166II	GTNNAC	4 cut(s)	692, 734, 782, 1024
Hpy188I	TCNGA	7 cut(s)	12, 724, 895, 945, 1030, 1084, 1129
Hpy188III	TCNNGA	4 cut(s)	170, 361, 385, 455
Hpy8I	GTNNAC	4 cut(s)	692, 734, 782, 1024
Hpy99I	CGWCG	2 cut(s)	570, 573
HpyAV	CCTTC	5 cut(s)	119, 221, 453, 957, 1153
HpyCH4IV	ACGT	4 cut(s)	547, 694, 784, 1138
HpyCH4V	TGCA	7 cut(s)	65, 179, 438, 500, 545, 830, 1144
HpyF10VI	GCNNNNNNNGC	3 cut(s)	251, 935, 1094
HpyF3I	CTNAG	7 cut(s)	186, 514, 586, 791, 1018, 1038, 1098
HpySE526I	ACGT	4 cut(s)	547, 694, 784, 1138
Hsp92II	CATG	8 cut(s)	149, 305, 458, 702, 746, 774, 983, 995
Ksp22I	TGATCA	2 cut(s)	481, 895
Kzo9I	GATC	4 cut(s)	387, 481, 489, 895
LmnI	GCTCC	7 cut(s)	78, 134, 677, 685, 935, 976, 1102
LpnPI	CCDG	9 cut(s)	51, 144, 150, 312, 410, 696, 868, 895, 1100
Lsp1109I	GCAGC	2 cut(s)	57, 243
LweI	GCATC	2 cut(s)	145, 1075
MaeI	CTAG	1 cut(s)	1170
MaeII	ACGT	4 cut(s)	547, 694, 784, 1138
MaeIII	GTNAC	2 cut(s)	460, 635
MalI	GATC	4 cut(s)	389, 483, 491, 897
MboI	GATC	4 cut(s)	387, 481, 489, 895
MboII	GAAGA	5 cut(s)	302, 440, 443, 818, 1059
MfeI	CAATTG	1 cut(s)	520
MflI	RGATCY	1 cut(s)	489
MhlI	GDGCHC	3 cut(s)	620, 682, 940
MluCI	AATT	7 cut(s)	199, 208, 280, 520, 764, 832, 1120
MlyI	GAGTC	3 cut(s)	506, 1010, 1019
MmeI	TCCRAC	1 cut(s)	954
MnlI	CCTC	7 cut(s)	49, 181, 298, 451, 553, 697, 788
Mph1103I	ATGCAT	1 cut(s)	181
MroXI	GAANNNNTTC	1 cut(s)	738
MseI	TTAA	2 cut(s)	597, 642
MslI	CAYNNNNRTG	1 cut(s)	150
MspI	CCGG	1 cut(s)	683
MspR9I	CCNGG	1 cut(s)	883
MunI	CAATTG	1 cut(s)	520
MvaI	CCWGG	1 cut(s)	883
MwoI	GCNNNNNNNGC	3 cut(s)	251, 935, 1094
NdeII	GATC	4 cut(s)	387, 481, 489, 895
NlaIII	CATG	8 cut(s)	149, 305, 458, 702, 746, 774, 983, 995
NlaIV	GGNNCC	2 cut(s)	130, 618
NmuCI	GTSAC	1 cut(s)	635
NsiI	ATGCAT	1 cut(s)	181
NspI	RCATGY	1 cut(s)	149
NspV	TTCGAA	1 cut(s)	961
PagI	TCATGA	1 cut(s)	454
PdmI	GAANNNNTTC	1 cut(s)	738
PfeI	GAWTC	2 cut(s)	330, 1130
PflFI	GACNNNGTC	1 cut(s)	515
PkrI	GCNGC	2 cut(s)	72, 233
PleI	GAGTC	3 cut(s)	506, 1010, 1019
PpsI	GAGTC	3 cut(s)	506, 1010, 1019
Ppu21I	YACGTR	1 cut(s)	548
Psp124BI	GAGCTC	2 cut(s)	682, 940
Psp6I	CCWGG	1 cut(s)	881
PspGI	CCWGG	1 cut(s)	881
PspN4I	GGNNCC	2 cut(s)	130, 618
PspOMI	GGGCCC	1 cut(s)	616
PspPI	GGNCC	2 cut(s)	616, 617
PsuI	RGATCY	1 cut(s)	489
PsyI	GACNNNGTC	1 cut(s)	515
RsaI	GTAC	3 cut(s)	478, 550, 874
RsaNI	GTAC	3 cut(s)	477, 549, 873
RseI	CAYNNNNRTG	1 cut(s)	150
SacI	GAGCTC	2 cut(s)	682, 940
SaqAI	TTAA	2 cut(s)	597, 642
SatI	GCNGC	2 cut(s)	71, 232
Sau3AI	GATC	4 cut(s)	387, 481, 489, 895
Sau96I	GGNCC	2 cut(s)	616, 617
ScaI	AGTACT	1 cut(s)	478
SchI	GAGTC	3 cut(s)	506, 1010, 1019
ScrFI	CCNGG	1 cut(s)	883
SduI	GDGCHC	3 cut(s)	620, 682, 940
SfaNI	GCATC	2 cut(s)	145, 1075
SfcI	CTRYAG	2 cut(s)	240, 1071
SfuI	TTCGAA	1 cut(s)	961
SmiMI	CAYNNNNRTG	1 cut(s)	150
SmlI	CTYRAG	2 cut(s)	168, 359
SmoI	CTYRAG	2 cut(s)	168, 359
Sse9I	AATT	7 cut(s)	199, 208, 280, 520, 764, 832, 1120
SsiI	CCGC	1 cut(s)	1088
SspMI	CTAG	1 cut(s)	1170
SstI	GAGCTC	2 cut(s)	682, 940
StyD4I	CCNGG	1 cut(s)	881
StyI	CCWWGG	1 cut(s)	620
TaiI	ACGT	4 cut(s)	550, 697, 787, 1141
TaqI	TCGA	2 cut(s)	41, 961
TasI	AATT	7 cut(s)	199, 208, 280, 520, 764, 832, 1120
TatI	WGTACW	2 cut(s)	476, 872
TfiI	GAWTC	2 cut(s)	330, 1130
Tru1I	TTAA	2 cut(s)	597, 642
Tru9I	TTAA	2 cut(s)	597, 642
TseFI	GTSAC	1 cut(s)	635
TseI	GCWGC	2 cut(s)	70, 231
Tsp45I	GTSAC	1 cut(s)	635
TspDTI	ATGAA	5 cut(s)	201, 443, 687, 731, 980
Tth111I	GACNNNGTC	1 cut(s)	515
XapI	RAATTY	3 cut(s)	208, 764, 832
XceI	RCATGY	1 cut(s)	149
XmiI	GTMKAC	2 cut(s)	691, 781
XmnI	GAANNNNTTC	1 cut(s)	738
XspI	CTAG	1 cut(s)	1170
ZrmI	AGTACT	1 cut(s)	478
Zsp2I	ATGCAT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.