Rorug05G0036600

Belongs to the sterol desaturase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
2645644 .. 2647889
2246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0036600.1

Sequence Viewer

Length: 1506 bp
ATGGCATTGTTCTGTGATCTCCAAGTCGATGTCAATGGCGAAGAAGTCTTCATGGTGAACAAGGAAACTTTGGCATCTTTCTCTTGTCGATTAAGCAAACTATTTGGTAAATCAATGGGTACAACGAGCCTCAAAGTGATATTCCATGACTTTCCTGGAGGTGCAGAGGGTTTTGAGCTCATGACAAGGTTTTGTTACAACAATGGAACAACCGAAATAACTCCTTCCAACTTAGTCCTTGTATACTGCATCGCCGATTTCATGGAGATGGATGGTGATATACTATTGCAAGCTCAAAACACTCTTGATGGTATCAGCTCTTGGACGTGGTCTGAGCTTCTAGTAGCTCTGAAGCAGTGCCAAGATTTACTTTCCCCCTCAAATTCTTCATTGATATTGCAGATAGTCATGGACTGCATCATAGGCAAGCTTTCTTGTCCATTTTTTCCAACCCCCTATAATCTTAAAAGCAATTGCTCTATGAAAACATGGTGGTTTGAAGACTTGATGTTCTTAAATACAAAATCGATCGAAATGGTTATAAGAAGCCTGATATCCAAGGAGATTGAACAGTCTACAGTTTTCAGGTTTCTCCTTCGTTATCATCAGTCAAAGTGTTTTGGTGCCAAACCAGAAGAGAAGTACAAGATCACAGAGGTTGTTATCGGTCTACTTTCTCTGCTTGATAGGAGCTTCCTTTCTTTCAAGGGATTATTCAATATATATCAAGCGGCTTTGAACATGAAAGTAGGCAAGAAATACAAAAACAAGTTGGAGATTATGATAGGTTCACAGCTGGATCAAGCAACAATCGATTATTTACTTGTCCCATCTCCCTGTGGGAAAAAGTATGTTTATGATGTGAATTTGATTTTGAGGTTAGGGAAATCATTTCTTCTTCAAGAAGGGGGTCATTTATCCCAGAAGAGTCACTTCACAAAGGTCGCCAAGTTGATGGATTTATACCTTGCAGAAGTGGCTCCAGATTTTCATTTGAAACCTTCAAAGTTTGCAGCATTAGTTATGATGTTGCCAGCGTCTGTGCGAGAATCTCATGACAGAATTTACGATGCCATTGCTGTATATTTTAAGTGCCACCCTGGTCTATCTGAACAAGAGAAGCTGACAATCTGTTGTGCACTGAACTATAAGAAGCTCTCAGCAGGACCTTTGAAACAAGCCTCTCACACAAAGTTCCCTTCCAGAAGAGCAGTTGAAGCTTTCAAGAAACAGCGATCCAAGCTCAGAAGCGTACTCCAGGAAGTCTACTACATCCGAACCAAGGATAAGAAAGAGGAAATTGAGTCAGTCCTACTTGACGCAAAGAGTCTTGATCTCCCAACAGAGGCTCAGAAGCTCAGAGCAGATTTGCAAAGGATGCATTCGAAGGCATTGGAATTGGGGAAGGTTTTCGGGACAATGCAGATACAAGTGACAAGTGTAAACAAATCAAGATTGCCCTTTCAGGCAACCAATACTCGATACTTGCCAAAACTCTTTCCATAA

Protein Analysis

501

Amino Acids

56.94

Weight (kDa)

9.04

Isoelectric Point (pI)

41.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPH3 PF03000 163 - 388 7.8e-54 NPH3 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 542
AccB1I GGYRCC 1 cut(s) 623
AccI GTMKAC 4 cut(s) 243, 575, 670, 1266
AciI CCGC 1 cut(s) 731
AclWI GGATC 2 cut(s) 807, 1230
AcsI RAATTY 3 cut(s) 382, 865, 1062
AcuI CTGAAG 1 cut(s) 371
AfaI GTAC 3 cut(s) 121, 644, 1254
AfiI CCNNNNNNNGG 2 cut(s) 1282, 1345
AjiI CACGTC 1 cut(s) 327
AjnI CCWGG 3 cut(s) 154, 1099, 1257
Alw21I GWGCWC 2 cut(s) 180, 1141
Alw44I GTGCAC 1 cut(s) 1137
AlwI GGATC 2 cut(s) 807, 1230
AlwNI CAGNNNCTG 1 cut(s) 1040
ApaLI GTGCAC 1 cut(s) 1137
ApeKI GCWGC 1 cut(s) 1013
ApoI RAATTY 3 cut(s) 382, 865, 1062
Asp700I GAANNNNTTC 1 cut(s) 1409
AspS9I GGNCC 1 cut(s) 1166
AsuHPI GGTGA 2 cut(s) 67, 287
AsuII TTCGAA 1 cut(s) 1385
AvaII GGWCC 1 cut(s) 1166
BaeGI GKGCMC 1 cut(s) 1141
BanI GGYRCC 1 cut(s) 623
BanII GRGCYC 1 cut(s) 180
BbsI GAAGAC 2 cut(s) 40, 507
Bbv12I GWGCWC 2 cut(s) 180, 1141
BbvI GCAGC 1 cut(s) 1025
BccI CCATC 5 cut(s) 262, 266, 302, 838, 949
BcgI CGANNNNNNTGC 2 cut(s) 1058, 1092
BciT130I CCWGG 3 cut(s) 156, 1101, 1259
BfaI CTAG 1 cut(s) 341
BfmI CTRYAG 1 cut(s) 576
BisI GCNGC 2 cut(s) 732, 1014
BlsI GCNGC 2 cut(s) 733, 1015
Bme1390I CCNGG 3 cut(s) 156, 1101, 1259
Bme18I GGWCC 1 cut(s) 1166
BmgBI CACGTC 1 cut(s) 327
BmgT120I GGNCC 1 cut(s) 1166
BmiI GGNNCC 2 cut(s) 625, 981
BmrFI CCNGG 3 cut(s) 156, 1101, 1259
BmsI GCATC 5 cut(s) 83, 258, 426, 1060, 1368
BpiI GAAGAC 2 cut(s) 40, 507
BpmI CTGGAG 3 cut(s) 177, 966, 1241
Bpu14I TTCGAA 1 cut(s) 1385
Bsa29I ATCGAT 2 cut(s) 527, 813
BsaJI CCNNGG 3 cut(s) 558, 1099, 1281
Bsc4I CCNNNNNNNGG 2 cut(s) 1282, 1345
Bse3DI GCAATG 1 cut(s) 1074
BseBI CCWGG 3 cut(s) 156, 1101, 1259
BseCI ATCGAT 2 cut(s) 527, 813
BseDI CCNNGG 3 cut(s) 558, 1099, 1281
BseGI GGATG 3 cut(s) 277, 1272, 1383
BseLI CCNNNNNNNGG 2 cut(s) 1282, 1345
BseMI GCAATG 1 cut(s) 1074
BseMII CTCAG 5 cut(s) 324, 1173, 1258, 1364, 1372
BseSI GKGCMC 1 cut(s) 1141
BseXI GCAGC 1 cut(s) 1025
BsgI GTGCAG 1 cut(s) 183
Bsh1285I CGRYCG 1 cut(s) 531
BshNI GGYRCC 1 cut(s) 623
BshVI ATCGAT 2 cut(s) 527, 813
BsiEI CGRYCG 1 cut(s) 531
BsiHKAI GWGCWC 2 cut(s) 180, 1141
BslFI GGGAC 2 cut(s) 812, 1429
BslI CCNNNNNNNGG 2 cut(s) 1282, 1345
BsmFI GGGAC 2 cut(s) 812, 1429
BsmI GAATGC 1 cut(s) 1381
Bsp119I TTCGAA 1 cut(s) 1385
Bsp1286I GDGCHC 2 cut(s) 180, 1141
Bsp143I GATC 6 cut(s) 16, 528, 648, 799, 1235, 1333
BspACI CCGC 1 cut(s) 731
BspCNI CTCAG 5 cut(s) 325, 1172, 1257, 1363, 1371
BspDI ATCGAT 2 cut(s) 527, 813
BspHI TCATGA 2 cut(s) 180, 1054
BspLI GGNNCC 2 cut(s) 625, 981
BspPI GGATC 2 cut(s) 807, 1230
BspQI GCTCTTC 1 cut(s) 1201
BspT104I TTCGAA 1 cut(s) 1385
BspT107I GGYRCC 1 cut(s) 623
BsrDI GCAATG 1 cut(s) 1074
BssECI CCNNGG 3 cut(s) 558, 1099, 1281
BssMI GATC 6 cut(s) 16, 528, 648, 799, 1235, 1333
BssNAI GTATAC 1 cut(s) 244
BssT1I CCWWGG 2 cut(s) 558, 1281
Bst1107I GTATAC 1 cut(s) 244
Bst2UI CCWGG 3 cut(s) 156, 1101, 1259
Bst4CI ACNGT 2 cut(s) 573, 580
Bst6I CTCTTC 3 cut(s) 630, 920, 1201
BstAPI GCANNNNNTGC 1 cut(s) 1378
BstBI TTCGAA 1 cut(s) 1385
BstC8I GCNNGC 3 cut(s) 291, 428, 1035
BstDEI CTNAG 6 cut(s) 232, 333, 1159, 1244, 1350, 1358
BstF5I GGATG 3 cut(s) 277, 1272, 1383
BstKTI GATC 6 cut(s) 19, 531, 651, 802, 1238, 1336
BstMBI GATC 6 cut(s) 16, 528, 648, 799, 1235, 1333
BstMCI CGRYCG 1 cut(s) 531
BstMWI GCNNNNNNNGC 5 cut(s) 423, 977, 1217, 1240, 1378
BstNI CCWGG 3 cut(s) 156, 1101, 1259
BstSCI CCNGG 3 cut(s) 154, 1099, 1257
BstSFI CTRYAG 1 cut(s) 576
BstSLI GKGCMC 1 cut(s) 1141
BstV1I GCAGC 1 cut(s) 1025
BstV2I GAAGAC 2 cut(s) 40, 507
BstXI CCANNNNNNTGG 1 cut(s) 955
BstZ17I GTATAC 1 cut(s) 244
Bsu15I ATCGAT 2 cut(s) 527, 813
BsuTUI ATCGAT 2 cut(s) 527, 813
BtgZI GCGATG 1 cut(s) 235
BtrI CACGTC 1 cut(s) 327
BtsCI GGATG 3 cut(s) 277, 1272, 1383
BtsI GCAGTG 1 cut(s) 362
BtsIMutI CAGTG 2 cut(s) 362, 1139
Cac8I GCNNGC 3 cut(s) 291, 428, 1035
CaiI CAGNNNCTG 1 cut(s) 1040
CciI TCATGA 2 cut(s) 180, 1054
Cfr13I GGNCC 1 cut(s) 1166
ClaI ATCGAT 2 cut(s) 527, 813
CseI GACGC 2 cut(s) 1026, 1328
Csp6I GTAC 3 cut(s) 120, 643, 1253
CviAII CATG 8 cut(s) 52, 146, 181, 262, 409, 489, 742, 1055
CviQI GTAC 3 cut(s) 120, 643, 1253
DdeI CTNAG 6 cut(s) 232, 333, 1159, 1244, 1350, 1358
DpnI GATC 6 cut(s) 18, 530, 650, 801, 1237, 1335
DpnII GATC 6 cut(s) 16, 528, 648, 799, 1235, 1333
Eam1104I CTCTTC 3 cut(s) 630, 920, 1201
EarI CTCTTC 3 cut(s) 630, 920, 1201
Ecl136II GAGCTC 1 cut(s) 178
Eco130I CCWWGG 2 cut(s) 558, 1281
Eco24I GRGCYC 1 cut(s) 180
Eco32I GATATC 1 cut(s) 555
Eco47I GGWCC 1 cut(s) 1166
Eco53kI GAGCTC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 371
EcoICRI GAGCTC 1 cut(s) 178
EcoO109I RGGNCCY 1 cut(s) 1166
EcoRII CCWGG 3 cut(s) 154, 1099, 1257
EcoRV GATATC 1 cut(s) 555
EcoT14I CCWWGG 2 cut(s) 558, 1281
EcoT22I ATGCAT 1 cut(s) 1383
EcoT38I GRGCYC 1 cut(s) 180
ErhI CCWWGG 2 cut(s) 558, 1281
FaeI CATG 8 cut(s) 55, 149, 184, 265, 412, 492, 745, 1058
FalI AAGNNNNNCTT 4 cut(s) 354, 386, 917, 949
FaqI GGGAC 2 cut(s) 812, 1429
FatI CATG 8 cut(s) 51, 145, 180, 261, 408, 488, 741, 1054
FblI GTMKAC 4 cut(s) 243, 575, 670, 1266
Fnu4HI GCNGC 2 cut(s) 732, 1014
FokI GGATG 3 cut(s) 284, 1259, 1390
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 2 cut(s) 732, 1014
FspBI CTAG 1 cut(s) 341
GluI GCNGC 2 cut(s) 732, 1014
GsuI CTGGAG 3 cut(s) 177, 966, 1241
HgaI GACGC 2 cut(s) 1026, 1328
Hin1II CATG 8 cut(s) 55, 149, 184, 265, 412, 492, 745, 1058
HindIII AAGCTT 2 cut(s) 428, 1218
HinfI GANTC 4 cut(s) 928, 1049, 1304, 1327
HphI GGTGA 2 cut(s) 67, 287
Hpy166II GTNNAC 8 cut(s) 58, 244, 576, 671, 791, 1139, 1267, 1444
Hpy188I TCNGA 7 cut(s) 334, 351, 1111, 1247, 1277, 1353, 1361
Hpy8I GTNNAC 8 cut(s) 58, 244, 576, 671, 791, 1139, 1267, 1444
HpyAV CCTTC 7 cut(s) 234, 605, 899, 1011, 1209, 1381, 1399
HpyCH4III ACNGT 2 cut(s) 573, 580
HpyCH4IV ACGT 1 cut(s) 326
HpyF10VI GCNNNNNNNGC 5 cut(s) 423, 977, 1217, 1240, 1378
HpyF3I CTNAG 6 cut(s) 232, 333, 1159, 1244, 1350, 1358
HpySE526I ACGT 1 cut(s) 326
Hsp92II CATG 8 cut(s) 55, 149, 184, 265, 412, 492, 745, 1058
Kzo9I GATC 6 cut(s) 16, 528, 648, 799, 1235, 1333
LguI GCTCTTC 1 cut(s) 1201
LmnI GCTCC 2 cut(s) 690, 985
Lsp1109I GCAGC 1 cut(s) 1025
LweI GCATC 5 cut(s) 83, 258, 426, 1060, 1368
MaeI CTAG 1 cut(s) 341
MaeII ACGT 1 cut(s) 326
MaeIII GTNAC 3 cut(s) 194, 929, 1432
MalI GATC 6 cut(s) 18, 530, 650, 801, 1237, 1335
MboI GATC 6 cut(s) 16, 528, 648, 799, 1235, 1333
MboII GAAGA 9 cut(s) 40, 53, 378, 512, 647, 887, 890, 937, 1218
MfeI CAATTG 1 cut(s) 472
MhlI GDGCHC 2 cut(s) 180, 1141
MluCI AATT 6 cut(s) 382, 472, 865, 1062, 1299, 1397
MlyI GAGTC 3 cut(s) 937, 1313, 1336
MmeI TCCRAC 3 cut(s) 252, 473, 753
MnlI CCTC 9 cut(s) 140, 152, 160, 388, 649, 870, 1192, 1288, 1339
Mph1103I ATGCAT 1 cut(s) 1383
MroXI GAANNNNTTC 1 cut(s) 1409
MseI TTAA 4 cut(s) 92, 465, 515, 1089
MslI CAYNNNNRTG 1 cut(s) 266
MspA1I CMGCKG 1 cut(s) 796
MspR9I CCNGG 3 cut(s) 156, 1101, 1259
MunI CAATTG 1 cut(s) 472
Mva1269I GAATGC 1 cut(s) 1381
MvaI CCWGG 3 cut(s) 156, 1101, 1259
MwoI GCNNNNNNNGC 5 cut(s) 423, 977, 1217, 1240, 1378
NdeII GATC 6 cut(s) 16, 528, 648, 799, 1235, 1333
NlaIII CATG 8 cut(s) 55, 149, 184, 265, 412, 492, 745, 1058
NlaIV GGNNCC 2 cut(s) 625, 981
NmuCI GTSAC 2 cut(s) 929, 1432
NsiI ATGCAT 1 cut(s) 1383
NspV TTCGAA 1 cut(s) 1385
PagI TCATGA 2 cut(s) 180, 1054
PciSI GCTCTTC 1 cut(s) 1201
PctI GAATGC 1 cut(s) 1381
PdmI GAANNNNTTC 1 cut(s) 1409
PfeI GAWTC 1 cut(s) 1049
PflFI GACNNNGTC 1 cut(s) 328
PfoI TCCNGGA 2 cut(s) 154, 1257
PkrI GCNGC 2 cut(s) 733, 1015
Ple19I CGATCG 1 cut(s) 531
PleI GAGTC 3 cut(s) 936, 1312, 1335
PpsI GAGTC 3 cut(s) 936, 1312, 1335
PpuMI RGGWCCY 1 cut(s) 1166
PsiI TTATAA 1 cut(s) 542
Psp124BI GAGCTC 1 cut(s) 180
Psp5II RGGWCCY 1 cut(s) 1166
Psp6I CCWGG 3 cut(s) 154, 1099, 1257
PspGI CCWGG 3 cut(s) 154, 1099, 1257
PspN4I GGNNCC 2 cut(s) 625, 981
PspPI GGNCC 1 cut(s) 1166
PspPPI RGGWCCY 1 cut(s) 1166
PstNI CAGNNNCTG 1 cut(s) 1040
PsyI GACNNNGTC 1 cut(s) 328
PvuI CGATCG 1 cut(s) 531
PvuII CAGCTG 1 cut(s) 796
RsaI GTAC 3 cut(s) 121, 644, 1254
RsaNI GTAC 3 cut(s) 120, 643, 1253
RseI CAYNNNNRTG 1 cut(s) 266
SacI GAGCTC 1 cut(s) 180
SapI GCTCTTC 1 cut(s) 1201
SaqAI TTAA 4 cut(s) 92, 465, 515, 1089
SatI GCNGC 2 cut(s) 732, 1014
Sau3AI GATC 6 cut(s) 16, 528, 648, 799, 1235, 1333
Sau96I GGNCC 1 cut(s) 1166
SchI GAGTC 3 cut(s) 937, 1313, 1336
ScrFI CCNGG 3 cut(s) 156, 1101, 1259
SduI GDGCHC 2 cut(s) 180, 1141
SfaNI GCATC 5 cut(s) 83, 258, 426, 1060, 1368
SfcI CTRYAG 1 cut(s) 576
SfuI TTCGAA 1 cut(s) 1385
SinI GGWCC 1 cut(s) 1166
SmiMI CAYNNNNRTG 1 cut(s) 266
Sse9I AATT 6 cut(s) 382, 472, 865, 1062, 1299, 1397
SsiI CCGC 1 cut(s) 731
SspMI CTAG 1 cut(s) 341
SstI GAGCTC 1 cut(s) 180
StyD4I CCNGG 3 cut(s) 154, 1099, 1257
StyI CCWWGG 2 cut(s) 558, 1281
TaaI ACNGT 2 cut(s) 573, 580
TaiI ACGT 1 cut(s) 329
TaqI TCGA 7 cut(s) 27, 88, 527, 531, 813, 1385, 1480
TaqII GACCGA 1 cut(s) 656
TasI AATT 6 cut(s) 382, 472, 865, 1062, 1299, 1397
TatI WGTACW 1 cut(s) 642
TauI GCSGC 1 cut(s) 734
TfiI GAWTC 1 cut(s) 1049
Tru1I TTAA 4 cut(s) 92, 465, 515, 1089
Tru9I TTAA 4 cut(s) 92, 465, 515, 1089
TscAI CASTG 2 cut(s) 362, 1146
TseFI GTSAC 2 cut(s) 929, 1432
TseI GCWGC 1 cut(s) 1013
Tsp45I GTSAC 2 cut(s) 929, 1432
TspDTI ATGAA 6 cut(s) 40, 250, 378, 497, 758, 980
TspRI CASTG 2 cut(s) 362, 1146
Tth111I GACNNNGTC 1 cut(s) 328
VneI GTGCAC 1 cut(s) 1137
VpaK11BI GGWCC 1 cut(s) 1166
XapI RAATTY 3 cut(s) 382, 865, 1062
XcmI CCANNNNNNNNNTGG 1 cut(s) 152
XmiI GTMKAC 4 cut(s) 243, 575, 670, 1266
XmnI GAANNNNTTC 1 cut(s) 1409
XspI CTAG 1 cut(s) 341
Zsp2I ATGCAT 1 cut(s) 1383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.