Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001087

Physical Location & Seq

Genomic Coordinates Forward (+)

13094300 .. 13097020

Gene Structure 2721 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032287

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGTCATCAAACCTTTTACCGTGGACTTGGATAAGCCTCTCGTCTTCCAGGTTGGTCATCTCGGCGAAGCTTACAATGAATGGGTTCACCAACCTATTGTCAGCAAGGAAGGCCCTAGATTTTTTGCAAATGACTATATGGAGCTCTTGACCCGCACAGCGTGGTGGGTGATTCCACTTGTTTGGCTGCCTGTAGTATCCTGGTTAGTCTCCATGTCTTTTCAAATGGGGCTTACTTTACCTCAGGTAGCTTTAGCAGTGGTTGGTGGCATCTTTATTTGGACATTGATGGAGTATGTTTTGCATCGCTTCCTTTTTCATATGAAAACAACAGGCTATTGGGGAAACACCATTCATTATCTATTTCATGGTTGCCATCACAAGCACCCTATGGATGGGATGCGCCTTGTTTTTCCCCCTGCTGCGACAGCTATTCTCTGTGTGCCGTTTTGGAATACGTTTAGGCTTTTATCACCTCCATCAGTTGCTCCGGCTTTGTTTGGAGGAACCTTATTGGGATATGTAGCATATGATGTCACTCATTACTACCTGCACCATGGGAAGCCATACAAAAGATTGACTCAAGATCTGAAGAGATATCACTTGAACCATCACTTCAGAAATCAAATAACTATATTTGGTGCTATGGAACCTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016491 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071704 GO:0080132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5 FA_hydroxylase

Protein Analysis

220

Amino Acids

25.41

Weight (kDa)

8.84

Isoelectric Point (pI)

31.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	88 - 215	2.5e-11	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34770 AT4G20870 AT4G20870
fragaria_vesca	FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10760 FvH4_3g10760 FvH4_3g10760 FvH4_3g10780 FvH4_3g10780 FvH4_3g10780
malus_domestica	MD05G1268900.v1.1
prunus_persica	Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1
pyrus_communis	pycom05g25190 pycom10g20540
rosa_chinensis	RchiOBHm_Chr5g0017441 RchiOBHm_Chr5g0017481 RchiOBHm_Chr5g0017491 RchiOBHm_Chr5g0017501
rosa_laevigata	RLG00000032287 RLG00000032288 RLG00000032292 RLG00000032294
rosa_multiflora	Rmu_sc0007392.1_g000004 Rmu_sc0013973.1_g000006
rosa_roxburghii	Rroxscaffold_1G00059930 Rroxscaffold_1G00059950
rosa_rugosa	Rorug05G0035400 Rorug05G0035500 Rorug05G0035800 Rorug05G0035900 Rorug05G0036000 Rorug05G0036100 Rorug05G0036200 Rorug05G0036300 Rorug05G0036400 Rorug05G0036500 Rorug05G0036600
rosa_samantha	Rh5AG130200 Rh5AG130400 Rh5BG128400 Rh5BG128600 Rh5CG140900 Rh5DG130400 Rh5DG130600 Rh5DG130700 Rh5DG130800 Rh7BG398200
rosa_wichuraiana	Rw5G011240 Rw5G011250 Rw5G011260 Rw5G011270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	558
AciI	CCGC	1 cut(s)	154
AcuI	CTGAAG	2 cut(s)	601, 611
AdeI	CACNNNGTG	1 cut(s)	162
AfiI	CCNNNNNNNGG	1 cut(s)	395
AgsI	TTSAA	2 cut(s)	224, 607
AjnI	CCWGG	2 cut(s)	48, 200
AluBI	AGCT	4 cut(s)	71, 145, 251, 431
AluI	AGCT	4 cut(s)	71, 145, 251, 431
Alw21I	GWGCWC	1 cut(s)	147
Alw26I	GTCTC	1 cut(s)	214
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	2 cut(s)	187, 422
Asp700I	GAANNNNTTC	1 cut(s)	84
AspLEI	GCGC	1 cut(s)	405
AspS9I	GGNCC	1 cut(s)	113
AsuHPI	GGTGA	3 cut(s)	80, 181, 465
AxyI	CCTNAGG	1 cut(s)	243
BanII	GRGCYC	1 cut(s)	147
BbsI	GAAGAC	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	147
BbvI	GCAGC	2 cut(s)	174, 409
BccI	CCATC	5 cut(s)	283, 384, 389, 487, 618
BceAI	ACGGC	1 cut(s)	430
BciT130I	CCWGG	2 cut(s)	50, 202
BciVI	GTATCC	1 cut(s)	208
BcoDI	GTCTC	1 cut(s)	214
BfaI	CTAG	1 cut(s)	117
BfmI	CTRYAG	1 cut(s)	192
BfuAI	ACCTGC	1 cut(s)	558
BfuI	GTATCC	1 cut(s)	208
BglII	AGATCT	1 cut(s)	586
BisI	GCNGC	2 cut(s)	188, 423
BlsI	GCNGC	2 cut(s)	189, 424
Bme1390I	CCNGG	2 cut(s)	50, 202
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	2 cut(s)	508, 651
BmrFI	CCNGG	2 cut(s)	50, 202
BmsI	GCATC	3 cut(s)	279, 313, 390
BpiI	GAAGAC	1 cut(s)	37
BpuEI	CTTGAG	1 cut(s)	567
BsaJI	CCNNGG	2 cut(s)	21, 556
Bsc4I	CCNNNNNNNGG	1 cut(s)	395
Bse21I	CCTNAGG	1 cut(s)	243
BseBI	CCWGG	2 cut(s)	50, 202
BseDI	CCNNGG	2 cut(s)	21, 556
BseGI	GGATG	2 cut(s)	400, 405
BseLI	CCNNNNNNNGG	1 cut(s)	395
BseMII	CTCAG	1 cut(s)	257
BseXI	GCAGC	2 cut(s)	174, 409
BsgI	GTGCAG	1 cut(s)	536
BshFI	GGCC	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	147
BsiSI	CCGG	1 cut(s)	491
BslI	CCNNNNNNNGG	1 cut(s)	395
BsmAI	GTCTC	1 cut(s)	214
BsnI	GGCC	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp143I	GATC	1 cut(s)	586
Bsp19I	CCATGG	1 cut(s)	556
BspACI	CCGC	1 cut(s)	154
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	1 cut(s)	256
BspLI	GGNNCC	2 cut(s)	508, 651
BspMI	ACCTGC	1 cut(s)	558
BssECI	CCNNGG	2 cut(s)	21, 556
BssMI	GATC	1 cut(s)	586
BssT1I	CCWWGG	1 cut(s)	556
Bst2UI	CCWGG	2 cut(s)	50, 202
Bst4CI	ACNGT	1 cut(s)	22
Bst6I	CTCTTC	1 cut(s)	587
BstDEI	CTNAG	1 cut(s)	243
BstDSI	CCRYGG	2 cut(s)	21, 556
BstF5I	GGATG	2 cut(s)	400, 405
BstHHI	GCGC	1 cut(s)	405
BstKTI	GATC	1 cut(s)	589
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	1 cut(s)	586
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 428
BstNI	CCWGG	2 cut(s)	50, 202
BstSCI	CCNGG	2 cut(s)	48, 200
BstSFI	CTRYAG	1 cut(s)	192
BstV1I	GCAGC	2 cut(s)	174, 409
BstV2I	GAAGAC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	586
BstXI	CCANNNNNNTGG	1 cut(s)	183
BstYI	RGATCY	1 cut(s)	586
Bsu36I	CCTNAGG	1 cut(s)	243
BsuI	GTATCC	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	114
BtgI	CCRYGG	2 cut(s)	21, 556
BtgZI	GCGATG	1 cut(s)	290
BtsCI	GGATG	2 cut(s)	400, 405
BtsI	GCAGTG	1 cut(s)	264
BtsIMutI	CAGTG	1 cut(s)	264
BveI	ACCTGC	1 cut(s)	558
CfoI	GCGC	1 cut(s)	405
Cfr13I	GGNCC	1 cut(s)	113
CviAII	CATG	3 cut(s)	214, 368, 557
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	1 cut(s)	588
DpnII	GATC	1 cut(s)	586
DraIII	CACNNNGTG	1 cut(s)	162
Eam1104I	CTCTTC	1 cut(s)	587
EarI	CTCTTC	1 cut(s)	587
Ecl136II	GAGCTC	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	556
Eco24I	GRGCYC	1 cut(s)	147
Eco32I	GATATC	1 cut(s)	599
Eco53kI	GAGCTC	1 cut(s)	145
Eco57I	CTGAAG	2 cut(s)	601, 611
Eco81I	CCTNAGG	1 cut(s)	243
EcoICRI	GAGCTC	1 cut(s)	145
EcoO109I	RGGNCCY	1 cut(s)	113
EcoRII	CCWGG	2 cut(s)	48, 200
EcoRV	GATATC	1 cut(s)	599
EcoT14I	CCWWGG	1 cut(s)	556
EcoT38I	GRGCYC	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	556
FaeI	CATG	3 cut(s)	217, 371, 560
FatI	CATG	3 cut(s)	213, 367, 556
FauI	CCCGC	1 cut(s)	161
FauNDI	CATATG	2 cut(s)	321, 529
Fnu4HI	GCNGC	2 cut(s)	188, 423
FokI	GGATG	2 cut(s)	407, 412
FriOI	GRGCYC	1 cut(s)	147
Fsp4HI	GCNGC	2 cut(s)	188, 423
FspBI	CTAG	1 cut(s)	117
GlaI	GCGC	1 cut(s)	404
GluI	GCNGC	2 cut(s)	188, 423
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	1 cut(s)	491
HhaI	GCGC	1 cut(s)	405
Hin1II	CATG	3 cut(s)	217, 371, 560
Hin6I	GCGC	1 cut(s)	403
HinP1I	GCGC	1 cut(s)	403
HindIII	AAGCTT	1 cut(s)	69
HinfI	GANTC	2 cut(s)	172, 580
HpaII	CCGG	1 cut(s)	491
HphI	GGTGA	3 cut(s)	80, 181, 465
Hpy166II	GTNNAC	2 cut(s)	25, 88
Hpy188I	TCNGA	2 cut(s)	591, 620
Hpy188III	TCNNGA	2 cut(s)	148, 584
Hpy8I	GTNNAC	2 cut(s)	25, 88
HpyAV	CCTTC	1 cut(s)	104
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	1 cut(s)	458
HpyCH4V	TGCA	3 cut(s)	128, 304, 553
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 428
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	1 cut(s)	458
Hsp92II	CATG	3 cut(s)	217, 371, 560
HspAI	GCGC	1 cut(s)	403
Kzo9I	GATC	1 cut(s)	586
LmnI	GCTCC	2 cut(s)	142, 493
Lsp1109I	GCAGC	2 cut(s)	174, 409
LweI	GCATC	3 cut(s)	279, 313, 390
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	1 cut(s)	458
MaeIII	GTNAC	1 cut(s)	535
MalI	GATC	1 cut(s)	588
MboI	GATC	1 cut(s)	586
MboII	GAAGA	2 cut(s)	37, 604
MflI	RGATCY	1 cut(s)	586
MhlI	GDGCHC	1 cut(s)	147
MlyI	GAGTC	1 cut(s)	574
MnlI	CCTC	4 cut(s)	48, 252, 486, 497
MroXI	GAANNNNTTC	1 cut(s)	84
MspI	CCGG	1 cut(s)	491
MspR9I	CCNGG	2 cut(s)	50, 202
MvaI	CCWGG	2 cut(s)	50, 202
MwoI	GCNNNNNNNGC	2 cut(s)	111, 428
NcoI	CCATGG	1 cut(s)	556
NdeI	CATATG	2 cut(s)	321, 529
NdeII	GATC	1 cut(s)	586
NlaIII	CATG	3 cut(s)	217, 371, 560
NlaIV	GGNNCC	2 cut(s)	508, 651
NmeAIII	GCCGAG	1 cut(s)	42
NmuCI	GTSAC	1 cut(s)	535
PdmI	GAANNNNTTC	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	172
PkrI	GCNGC	2 cut(s)	189, 424
PleI	GAGTC	1 cut(s)	574
PpsI	GAGTC	1 cut(s)	574
Psp124BI	GAGCTC	1 cut(s)	147
Psp6I	CCWGG	2 cut(s)	48, 200
PspGI	CCWGG	2 cut(s)	48, 200
PspN4I	GGNNCC	2 cut(s)	508, 651
PspPI	GGNCC	1 cut(s)	113
PsuI	RGATCY	1 cut(s)	586
SacI	GAGCTC	1 cut(s)	147
SatI	GCNGC	2 cut(s)	188, 423
Sau3AI	GATC	1 cut(s)	586
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	1 cut(s)	574
ScrFI	CCNGG	2 cut(s)	50, 202
SduI	GDGCHC	1 cut(s)	147
SfaNI	GCATC	3 cut(s)	279, 313, 390
SfcI	CTRYAG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	582
SmoI	CTYRAG	1 cut(s)	582
SsiI	CCGC	1 cut(s)	154
SspMI	CTAG	1 cut(s)	117
SstI	GAGCTC	1 cut(s)	147
StyD4I	CCNGG	2 cut(s)	48, 200
StyI	CCWWGG	1 cut(s)	556
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	1 cut(s)	461
TfiI	GAWTC	1 cut(s)	172
TscAI	CASTG	1 cut(s)	264
TseFI	GTSAC	1 cut(s)	535
TseI	GCWGC	2 cut(s)	187, 422
Tsp45I	GTSAC	1 cut(s)	535
TspDTI	ATGAA	5 cut(s)	93, 308, 338, 344, 356
TspRI	CASTG	1 cut(s)	264
XmnI	GAANNNNTTC	1 cut(s)	84
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.