Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001087

Physical Location & Seq

Genomic Coordinates Forward (+)

6380546 .. 6384832

Gene Structure 4287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g10720.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGTTGTCAAACCTTTTACTGTGGACTTGGATAAGCCTCTCGTCTTCCAGGTTGGTCATCTTGGCAAAGGTTACAATGAATGGGTTCACCAACCTATCGTCAGCAAGGAAGGCCCCAGATTCTTTGCAAATGACTATTTGGAGCTCTTGACCCGCACAGCATGGTGGGTGATTCCACTAGTTTGGCTGCCTGTAGCATCCTGGTTAGTCTCTGTGTCTCTCCGAATGGGGCTCACTTTACCTCAGGCAGCTTTAGCAGTGGTTGGTGGAATCTTTATTTGGACATTGATGGAGTATGTTTTGCATCGCTTCCTTTTTCATATGAAAACAATAAGCTATTGGGGAAACACCATTCATTATCTTTTTCATGGTTGCCATCACAAGCACCCTACGGATGGGATGCGCCTTGTTTTCCCCCCTGCAGCGGCAGCTATTCTGTGTGTGCCGTTTTGGAATATGTTTAGGCTTTTATCACCTACATCAGTTGCTCCGGCTTTGTTTGGAGGAACCTTATTTGGATATGTAGCATATGATGTTACTCATTACTACCTGCACCATGGGAAGCCATCTAATAGATTGACTCAAGATATGAAGAAATATCACTTGAACCATCACTTCAGAATTCAGAGTAAGGGATTCGGGATCACTTCCTCCTTATGGGACAATGTTTTCGGAACAGTGCCTTCAACAAAAGCAGCAGAGAAAATGAGTAACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016491 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071704 GO:0080132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5 FA_hydroxylase

Protein Analysis

240

Amino Acids

27.31

Weight (kDa)

9.52

Isoelectric Point (pI)

31.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	104 - 210	9.4e-12	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34770 AT4G20870 AT4G20870
fragaria_vesca	FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10760 FvH4_3g10760 FvH4_3g10760 FvH4_3g10780 FvH4_3g10780 FvH4_3g10780
malus_domestica	MD05G1268900.v1.1
prunus_persica	Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1
pyrus_communis	pycom05g25190 pycom10g20540
rosa_chinensis	RchiOBHm_Chr5g0017441 RchiOBHm_Chr5g0017481 RchiOBHm_Chr5g0017491 RchiOBHm_Chr5g0017501
rosa_laevigata	RLG00000032287 RLG00000032288 RLG00000032292 RLG00000032294
rosa_multiflora	Rmu_sc0007392.1_g000004 Rmu_sc0013973.1_g000006
rosa_roxburghii	Rroxscaffold_1G00059930 Rroxscaffold_1G00059950
rosa_rugosa	Rorug05G0035400 Rorug05G0035500 Rorug05G0035800 Rorug05G0035900 Rorug05G0036000 Rorug05G0036100 Rorug05G0036200 Rorug05G0036300 Rorug05G0036400 Rorug05G0036500 Rorug05G0036600
rosa_samantha	Rh5AG130200 Rh5AG130400 Rh5BG128400 Rh5BG128600 Rh5CG140900 Rh5DG130400 Rh5DG130600 Rh5DG130700 Rh5DG130800 Rh7BG398200
rosa_wichuraiana	Rw5G011240 Rw5G011250 Rw5G011260 Rw5G011270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	558
AciI	CCGC	2 cut(s)	154, 425
AclWI	GGATC	1 cut(s)	650
AcsI	RAATTY	1 cut(s)	621
AcuI	CTGAAG	1 cut(s)	601
AfiI	CCNNNNNNNGG	3 cut(s)	395, 424, 657
AgsI	TTSAA	2 cut(s)	607, 687
AhlI	ACTAGT	1 cut(s)	178
AjnI	CCWGG	2 cut(s)	48, 200
AjuI	GAANNNNNNNTTGG	2 cut(s)	262, 294
AluBI	AGCT	4 cut(s)	145, 251, 336, 431
AluI	AGCT	4 cut(s)	145, 251, 336, 431
Alw21I	GWGCWC	1 cut(s)	147
Alw26I	GTCTC	2 cut(s)	214, 222
AlwI	GGATC	1 cut(s)	650
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	5 cut(s)	187, 248, 422, 428, 695
ApoI	RAATTY	1 cut(s)	621
ArsI	GACNNNNNNTTYG	2 cut(s)	653, 685
Asp700I	GAANNNNTTC	1 cut(s)	84
AspLEI	GCGC	1 cut(s)	405
AspS9I	GGNCC	1 cut(s)	113
AsuHPI	GGTGA	3 cut(s)	80, 181, 465
AxyI	CCTNAGG	1 cut(s)	243
BanII	GRGCYC	2 cut(s)	147, 234
BbsI	GAAGAC	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	147
BbvI	GCAGC	5 cut(s)	174, 260, 434, 440, 707
BccI	CCATC	5 cut(s)	283, 384, 389, 574, 618
BceAI	ACGGC	1 cut(s)	430
BciT130I	CCWGG	2 cut(s)	50, 202
BcoDI	GTCTC	2 cut(s)	214, 222
BcuI	ACTAGT	1 cut(s)	178
BfaI	CTAG	1 cut(s)	179
BfmI	CTRYAG	2 cut(s)	192, 420
BfuAI	ACCTGC	1 cut(s)	558
BisI	GCNGC	6 cut(s)	188, 249, 423, 426, 429, 696
BlsI	GCNGC	6 cut(s)	189, 250, 424, 427, 430, 697
Bme1390I	CCNGG	2 cut(s)	50, 202
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	2 cut(s)	115, 508
BmrFI	CCNGG	2 cut(s)	50, 202
BmsI	GCATC	3 cut(s)	206, 313, 390
BpiI	GAAGAC	1 cut(s)	37
BpuEI	CTTGAG	1 cut(s)	567
BsaJI	CCNNGG	1 cut(s)	556
Bsc4I	CCNNNNNNNGG	3 cut(s)	395, 424, 657
Bse1I	ACTGG	1 cut(s)	715
Bse21I	CCTNAGG	1 cut(s)	243
BseBI	CCWGG	2 cut(s)	50, 202
BseDI	CCNNGG	1 cut(s)	556
BseGI	GGATG	3 cut(s)	197, 400, 405
BseLI	CCNNNNNNNGG	3 cut(s)	395, 424, 657
BseMII	CTCAG	1 cut(s)	257
BseNI	ACTGG	1 cut(s)	715
BseXI	GCAGC	5 cut(s)	174, 260, 434, 440, 707
BsgI	GTGCAG	1 cut(s)	536
BshFI	GGCC	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	147
BsiSI	CCGG	1 cut(s)	491
BslFI	GGGAC	1 cut(s)	674
BslI	CCNNNNNNNGG	3 cut(s)	395, 424, 657
BsmAI	GTCTC	2 cut(s)	214, 222
BsmFI	GGGAC	1 cut(s)	674
BsnI	GGCC	1 cut(s)	114
Bsp1286I	GDGCHC	2 cut(s)	147, 234
Bsp143I	GATC	1 cut(s)	642
Bsp19I	CCATGG	1 cut(s)	556
BspACI	CCGC	2 cut(s)	154, 425
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	1 cut(s)	256
BspLI	GGNNCC	2 cut(s)	115, 508
BspMAI	CTGCAG	1 cut(s)	424
BspMI	ACCTGC	1 cut(s)	558
BspPI	GGATC	1 cut(s)	650
BsrI	ACTGG	1 cut(s)	715
BssECI	CCNNGG	1 cut(s)	556
BssMI	GATC	1 cut(s)	642
BssT1I	CCWWGG	1 cut(s)	556
Bst2UI	CCWGG	2 cut(s)	50, 202
Bst4CI	ACNGT	2 cut(s)	22, 679
BstDEI	CTNAG	1 cut(s)	243
BstDSI	CCRYGG	1 cut(s)	556
BstF5I	GGATG	3 cut(s)	197, 400, 405
BstHHI	GCGC	1 cut(s)	405
BstKTI	GATC	1 cut(s)	645
BstMAI	GTCTC	2 cut(s)	214, 222
BstMBI	GATC	1 cut(s)	642
BstMWI	GCNNNNNNNGC	3 cut(s)	111, 254, 428
BstNI	CCWGG	2 cut(s)	50, 202
BstSCI	CCNGG	2 cut(s)	48, 200
BstSFI	CTRYAG	2 cut(s)	192, 420
BstV1I	GCAGC	5 cut(s)	174, 260, 434, 440, 707
BstV2I	GAAGAC	1 cut(s)	37
BstXI	CCANNNNNNTGG	1 cut(s)	183
Bsu36I	CCTNAGG	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	114
BtgI	CCRYGG	1 cut(s)	556
BtgZI	GCGATG	1 cut(s)	290
BtsCI	GGATG	3 cut(s)	197, 400, 405
BtsI	GCAGTG	1 cut(s)	264
BtsIMutI	CAGTG	2 cut(s)	264, 684
BveI	ACCTGC	1 cut(s)	558
CfoI	GCGC	1 cut(s)	405
Cfr13I	GGNCC	1 cut(s)	113
CviAII	CATG	3 cut(s)	162, 368, 557
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	1 cut(s)	644
DpnII	GATC	1 cut(s)	642
Ecl136II	GAGCTC	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	556
Eco24I	GRGCYC	2 cut(s)	147, 234
Eco53kI	GAGCTC	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	601
Eco81I	CCTNAGG	1 cut(s)	243
EcoICRI	GAGCTC	1 cut(s)	145
EcoO109I	RGGNCCY	1 cut(s)	113
EcoRI	GAATTC	1 cut(s)	621
EcoRII	CCWGG	2 cut(s)	48, 200
EcoT14I	CCWWGG	1 cut(s)	556
EcoT38I	GRGCYC	2 cut(s)	147, 234
ErhI	CCWWGG	1 cut(s)	556
FaeI	CATG	3 cut(s)	165, 371, 560
FaqI	GGGAC	1 cut(s)	674
FatI	CATG	3 cut(s)	161, 367, 556
FauI	CCCGC	1 cut(s)	161
FauNDI	CATATG	2 cut(s)	321, 529
Fnu4HI	GCNGC	6 cut(s)	188, 249, 423, 426, 429, 696
FokI	GGATG	3 cut(s)	184, 407, 412
FriOI	GRGCYC	2 cut(s)	147, 234
Fsp4HI	GCNGC	6 cut(s)	188, 249, 423, 426, 429, 696
FspBI	CTAG	1 cut(s)	179
GlaI	GCGC	1 cut(s)	404
GluI	GCNGC	6 cut(s)	188, 249, 423, 426, 429, 696
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	1 cut(s)	491
HhaI	GCGC	1 cut(s)	405
Hin1II	CATG	3 cut(s)	165, 371, 560
Hin6I	GCGC	1 cut(s)	403
HinP1I	GCGC	1 cut(s)	403
HinfI	GANTC	5 cut(s)	120, 172, 270, 580, 636
HpaII	CCGG	1 cut(s)	491
HphI	GGTGA	3 cut(s)	80, 181, 465
Hpy166II	GTNNAC	2 cut(s)	25, 88
Hpy188I	TCNGA	4 cut(s)	224, 620, 627, 674
Hpy188III	TCNNGA	3 cut(s)	148, 584, 640
Hpy8I	GTNNAC	2 cut(s)	25, 88
HpyAV	CCTTC	2 cut(s)	104, 693
HpyCH4III	ACNGT	2 cut(s)	22, 679
HpyCH4V	TGCA	4 cut(s)	128, 304, 422, 553
HpyF10VI	GCNNNNNNNGC	3 cut(s)	111, 254, 428
HpyF3I	CTNAG	1 cut(s)	243
Hsp92II	CATG	3 cut(s)	165, 371, 560
HspAI	GCGC	1 cut(s)	403
Kzo9I	GATC	1 cut(s)	642
LmnI	GCTCC	2 cut(s)	142, 493
Lsp1109I	GCAGC	5 cut(s)	174, 260, 434, 440, 707
LweI	GCATC	3 cut(s)	206, 313, 390
MaeI	CTAG	1 cut(s)	179
MaeIII	GTNAC	3 cut(s)	71, 535, 710
MalI	GATC	1 cut(s)	644
MboI	GATC	1 cut(s)	642
MboII	GAAGA	2 cut(s)	37, 604
MhlI	GDGCHC	2 cut(s)	147, 234
MluCI	AATT	1 cut(s)	621
MlyI	GAGTC	1 cut(s)	574
MnlI	CCTC	4 cut(s)	48, 252, 497, 661
MroXI	GAANNNNTTC	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	1 cut(s)	491
MspR9I	CCNGG	2 cut(s)	50, 202
MvaI	CCWGG	2 cut(s)	50, 202
MwoI	GCNNNNNNNGC	3 cut(s)	111, 254, 428
NcoI	CCATGG	1 cut(s)	556
NdeI	CATATG	2 cut(s)	321, 529
NdeII	GATC	1 cut(s)	642
NlaIII	CATG	3 cut(s)	165, 371, 560
NlaIV	GGNNCC	2 cut(s)	115, 508
PdmI	GAANNNNTTC	1 cut(s)	84
PfeI	GAWTC	4 cut(s)	120, 172, 270, 636
PkrI	GCNGC	6 cut(s)	189, 250, 424, 427, 430, 697
PleI	GAGTC	1 cut(s)	574
PpsI	GAGTC	1 cut(s)	574
Psp124BI	GAGCTC	1 cut(s)	147
Psp6I	CCWGG	2 cut(s)	48, 200
PspGI	CCWGG	2 cut(s)	48, 200
PspN4I	GGNNCC	2 cut(s)	115, 508
PspPI	GGNCC	1 cut(s)	113
PstI	CTGCAG	1 cut(s)	424
SacI	GAGCTC	1 cut(s)	147
SatI	GCNGC	6 cut(s)	188, 249, 423, 426, 429, 696
Sau3AI	GATC	1 cut(s)	642
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	1 cut(s)	574
ScrFI	CCNGG	2 cut(s)	50, 202
SduI	GDGCHC	2 cut(s)	147, 234
SfaNI	GCATC	3 cut(s)	206, 313, 390
SfcI	CTRYAG	2 cut(s)	192, 420
SmlI	CTYRAG	1 cut(s)	582
SmoI	CTYRAG	1 cut(s)	582
SpeI	ACTAGT	1 cut(s)	178
Sse9I	AATT	1 cut(s)	621
SsiI	CCGC	2 cut(s)	154, 425
SspMI	CTAG	1 cut(s)	179
SstI	GAGCTC	1 cut(s)	147
StyD4I	CCNGG	2 cut(s)	48, 200
StyI	CCWWGG	1 cut(s)	556
TaaI	ACNGT	2 cut(s)	22, 679
TasI	AATT	1 cut(s)	621
TauI	GCSGC	1 cut(s)	428
TfiI	GAWTC	4 cut(s)	120, 172, 270, 636
TscAI	CASTG	2 cut(s)	264, 684
TseI	GCWGC	5 cut(s)	187, 248, 422, 428, 695
TspDTI	ATGAA	6 cut(s)	93, 308, 338, 344, 356, 605
TspGWI	ACGGA	1 cut(s)	407
TspRI	CASTG	2 cut(s)	264, 684
XapI	RAATTY	1 cut(s)	621
XmnI	GAANNNNTTC	1 cut(s)	84
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.