Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001087

Physical Location & Seq

Genomic Coordinates Reverse (-)

2536048 .. 2539421

Gene Structure 3374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0036100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGTTTGTCAATTCTGGGTATGAGCTTGTGCTCGATCTTGAGCAAAAAACTTGGTTATGGGTTATAGGTAGTGTGAAGAATAGAGTTCTTCTGGACACTGGGTACTGGCACTGGTATGGTTATGTTTTCTGGTTACTGAGTAAGATGAAGAACAGAGTTCTTCTCTTGGTGTTTCTGGCAGCGGAATATGGGTATAGCTCACTTAACAATATCAACACTGATCAAGCCAACATGACCACTTTACTTGAGTTGGCTAAACTTAACTTCAACATGGTTCAAGCCACACTCCAAAGAAATCTAAGGGAAGTATCCGTGTGGTGGAACAATCTGGGTCTCAATAAGAACTTGGACTTTGCAAGAGATAGACTGGTCGAATGTTTCATGTGTGCCGTGGGATTAGCTTTCGAGCATGAGTACAAGTCCTTTAGAAAATGGATAACTAAAGTCGTCAATTTGATTCTCATCATCGATGACGTTTATGATGTTTATGGCTCATTGGAAGAGCTAAAACATTTCACCAATGTTGTTGAAAGGTGGGATATTAGGGAAACCGAGCAGCTTCCGGAGTGTATGAAGATCTTTTTCCAAGTACTCTACAGTACTACTTGTGAAATTGCTTATGAAATTGAGGAGGAGAATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

214

Amino Acids

25.39

Weight (kDa)

4.98

Isoelectric Point (pI)

31.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth_C	PF03936	109 - 212	2.5e-40	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	148 - 208	7.7e-14	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34770 AT4G20870 AT4G20870
fragaria_vesca	FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10760 FvH4_3g10760 FvH4_3g10760 FvH4_3g10780 FvH4_3g10780 FvH4_3g10780
malus_domestica	MD05G1268900.v1.1
prunus_persica	Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1
pyrus_communis	pycom05g25190 pycom10g20540
rosa_chinensis	RchiOBHm_Chr5g0017441 RchiOBHm_Chr5g0017481 RchiOBHm_Chr5g0017491 RchiOBHm_Chr5g0017501
rosa_laevigata	RLG00000032287 RLG00000032288 RLG00000032292 RLG00000032294
rosa_multiflora	Rmu_sc0007392.1_g000004 Rmu_sc0013973.1_g000006
rosa_roxburghii	Rroxscaffold_1G00059930 Rroxscaffold_1G00059950
rosa_rugosa	Rorug05G0035400 Rorug05G0035500 Rorug05G0035800 Rorug05G0035900 Rorug05G0036000 Rorug05G0036100 Rorug05G0036200 Rorug05G0036300 Rorug05G0036400 Rorug05G0036500 Rorug05G0036600
rosa_samantha	Rh5AG130200 Rh5AG130400 Rh5BG128400 Rh5BG128600 Rh5CG140900 Rh5DG130400 Rh5DG130600 Rh5DG130700 Rh5DG130800 Rh7BG398200
rosa_wichuraiana	Rw5G011240 Rw5G011250 Rw5G011260 Rw5G011270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	562
AciI	CCGC	1 cut(s)	182
AfaI	GTAC	4 cut(s)	104, 416, 591, 601
AfiI	CCNNNNNNNGG	1 cut(s)	318
AgsI	TTSAA	3 cut(s)	268, 278, 530
AluBI	AGCT	5 cut(s)	25, 198, 401, 505, 559
AluI	AGCT	5 cut(s)	25, 198, 401, 505, 559
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	1 cut(s)	338
Aor13HI	TCCGGA	1 cut(s)	562
ApeKI	GCWGC	2 cut(s)	179, 556
AsuHPI	GGTGA	1 cut(s)	508
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	2 cut(s)	191, 568
BceAI	ACGGC	1 cut(s)	374
BciVI	GTATCC	1 cut(s)	319
BclI	TGATCA	1 cut(s)	220
BcoDI	GTCTC	1 cut(s)	338
BfmI	CTRYAG	1 cut(s)	595
BfuI	GTATCC	1 cut(s)	319
BglII	AGATCT	1 cut(s)	576
BisI	GCNGC	2 cut(s)	180, 557
BlsI	GCNGC	2 cut(s)	181, 558
BmcAI	AGTACT	2 cut(s)	591, 601
BmrI	ACTGGG	1 cut(s)	108
BmuI	ACTGGG	1 cut(s)	108
BplI	GAGNNNNNCTC	2 cut(s)	147, 179
BpuEI	CTTGAG	2 cut(s)	59, 266
Bsa29I	ATCGAT	1 cut(s)	468
BsaBI	GATNNNNATC	1 cut(s)	461
BsaI	GGTCTC	1 cut(s)	338
BsaJI	CCNNGG	1 cut(s)	390
BsaWI	WCCGGW	1 cut(s)	562
Bsc4I	CCNNNNNNNGG	1 cut(s)	318
Bse1I	ACTGG	4 cut(s)	103, 110, 116, 372
Bse8I	GATNNNNATC	1 cut(s)	461
BseAI	TCCGGA	1 cut(s)	562
BseCI	ATCGAT	1 cut(s)	468
BseDI	CCNNGG	1 cut(s)	390
BseJI	GATNNNNATC	1 cut(s)	461
BseLI	CCNNNNNNNGG	1 cut(s)	318
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	4 cut(s)	103, 110, 116, 372
BseRI	GAGGAG	1 cut(s)	644
BseXI	GCAGC	2 cut(s)	191, 568
BshVI	ATCGAT	1 cut(s)	468
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	563
BslI	CCNNNNNNNGG	1 cut(s)	318
BsmAI	GTCTC	1 cut(s)	338
Bso31I	GGTCTC	1 cut(s)	338
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp13I	TCCGGA	1 cut(s)	562
Bsp143I	GATC	3 cut(s)	34, 220, 576
BspACI	CCGC	1 cut(s)	182
BspCNI	CTCAG	1 cut(s)	129
BspDI	ATCGAT	1 cut(s)	468
BspEI	TCCGGA	1 cut(s)	562
BspQI	GCTCTTC	1 cut(s)	495
BspTNI	GGTCTC	1 cut(s)	338
BsrI	ACTGG	4 cut(s)	103, 110, 116, 372
BssECI	CCNNGG	1 cut(s)	390
BssMI	GATC	3 cut(s)	34, 220, 576
Bst4CI	ACNGT	1 cut(s)	599
Bst6I	CTCTTC	1 cut(s)	495
BstDEI	CTNAG	2 cut(s)	137, 299
BstDSI	CCRYGG	1 cut(s)	390
BstKTI	GATC	3 cut(s)	37, 223, 579
BstMAI	GTCTC	1 cut(s)	338
BstMBI	GATC	3 cut(s)	34, 220, 576
BstSFI	CTRYAG	1 cut(s)	595
BstV1I	GCAGC	2 cut(s)	191, 568
BstX2I	RGATCY	1 cut(s)	576
BstYI	RGATCY	1 cut(s)	576
Bsu15I	ATCGAT	1 cut(s)	468
BsuI	GTATCC	1 cut(s)	319
BsuTUI	ATCGAT	1 cut(s)	468
BtgI	CCRYGG	1 cut(s)	390
BtsIMutI	CAGTG	3 cut(s)	96, 109, 216
ClaI	ATCGAT	1 cut(s)	468
Csp6I	GTAC	4 cut(s)	103, 415, 590, 600
CspCI	CAANNNNNGTGG	2 cut(s)	226, 261
CviAII	CATG	4 cut(s)	232, 271, 382, 410
CviJI	RGCY	9 cut(s)	25, 198, 227, 254, 281, 401, 492, 505, 559
CviKI_1	RGCY	9 cut(s)	25, 198, 227, 254, 281, 401, 492, 505, 559
CviQI	GTAC	4 cut(s)	103, 415, 590, 600
DdeI	CTNAG	2 cut(s)	137, 299
DpnI	GATC	3 cut(s)	36, 222, 578
DpnII	GATC	3 cut(s)	34, 220, 576
Eam1104I	CTCTTC	1 cut(s)	495
EarI	CTCTTC	1 cut(s)	495
Eco31I	GGTCTC	1 cut(s)	338
FaeI	CATG	4 cut(s)	235, 274, 385, 413
FatI	CATG	4 cut(s)	231, 270, 381, 409
FbaI	TGATCA	1 cut(s)	220
Fnu4HI	GCNGC	2 cut(s)	180, 557
Fsp4HI	GCNGC	2 cut(s)	180, 557
GluI	GCNGC	2 cut(s)	180, 557
HapII	CCGG	1 cut(s)	563
Hin1II	CATG	4 cut(s)	235, 274, 385, 413
HinfI	GANTC	1 cut(s)	457
HpaII	CCGG	1 cut(s)	563
HphI	GGTGA	1 cut(s)	508
Hpy188III	TCNNGA	3 cut(s)	38, 92, 563
HpyCH4III	ACNGT	1 cut(s)	599
HpyCH4IV	ACGT	1 cut(s)	474
HpyCH4V	TGCA	1 cut(s)	356
HpyF3I	CTNAG	2 cut(s)	137, 299
HpySE526I	ACGT	1 cut(s)	474
Hsp92II	CATG	4 cut(s)	235, 274, 385, 413
Kpn2I	TCCGGA	1 cut(s)	562
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	3 cut(s)	34, 220, 576
LguI	GCTCTTC	1 cut(s)	495
LpnPI	CCDG	9 cut(s)	77, 84, 91, 97, 115, 161, 314, 353, 576
Lsp1109I	GCAGC	2 cut(s)	191, 568
MaeII	ACGT	1 cut(s)	474
MaeIII	GTNAC	1 cut(s)	132
MalI	GATC	3 cut(s)	36, 222, 578
MboI	GATC	3 cut(s)	34, 220, 576
MboII	GAAGA	6 cut(s)	80, 88, 152, 160, 512, 586
MflI	RGATCY	1 cut(s)	576
MhlI	GDGCHC	1 cut(s)	33
MluCI	AATT	4 cut(s)	10, 451, 612, 624
MnlI	CCTC	2 cut(s)	622, 625
MroI	TCCGGA	1 cut(s)	562
MseI	TTAA	2 cut(s)	204, 261
MslI	CAYNNNNRTG	1 cut(s)	114
MspA1I	CMGCKG	1 cut(s)	182
MspI	CCGG	1 cut(s)	563
NdeII	GATC	3 cut(s)	34, 220, 576
NlaIII	CATG	4 cut(s)	235, 274, 385, 413
PciSI	GCTCTTC	1 cut(s)	495
PfeI	GAWTC	1 cut(s)	457
PkrI	GCNGC	2 cut(s)	181, 558
PsuI	RGATCY	1 cut(s)	576
RsaI	GTAC	4 cut(s)	104, 416, 591, 601
RsaNI	GTAC	4 cut(s)	103, 415, 590, 600
RseI	CAYNNNNRTG	1 cut(s)	114
SapI	GCTCTTC	1 cut(s)	495
SaqAI	TTAA	2 cut(s)	204, 261
SatI	GCNGC	2 cut(s)	180, 557
Sau3AI	GATC	3 cut(s)	34, 220, 576
ScaI	AGTACT	2 cut(s)	591, 601
SduI	GDGCHC	1 cut(s)	33
SetI	ASST	8 cut(s)	27, 70, 200, 403, 477, 507, 536, 561
SfcI	CTRYAG	1 cut(s)	595
SmiMI	CAYNNNNRTG	1 cut(s)	114
SmlI	CTYRAG	2 cut(s)	38, 245
SmoI	CTYRAG	2 cut(s)	38, 245
Sse9I	AATT	4 cut(s)	10, 451, 612, 624
SsiI	CCGC	1 cut(s)	182
TaaI	ACNGT	1 cut(s)	599
TaiI	ACGT	1 cut(s)	477
TaqI	TCGA	4 cut(s)	33, 372, 405, 468
TasI	AATT	4 cut(s)	10, 451, 612, 624
TatI	WGTACW	3 cut(s)	414, 589, 599
TfiI	GAWTC	1 cut(s)	457
Tru1I	TTAA	2 cut(s)	204, 261
Tru9I	TTAA	2 cut(s)	204, 261
TscAI	CASTG	3 cut(s)	103, 116, 223
TseI	GCWGC	2 cut(s)	179, 556
TspDTI	ATGAA	4 cut(s)	161, 370, 587, 636
TspGWI	ACGGA	1 cut(s)	301
TspRI	CASTG	3 cut(s)	103, 116, 223
ZrmI	AGTACT	2 cut(s)	591, 601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.