Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001087

Physical Location & Seq

Genomic Coordinates Forward (+)

12141245 .. 12143725

Gene Structure 2481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29779

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGTAGTCAAACCTTTTACGGTGGACTTGGATAAGCCTCTCGTCTTCCAGGTTGGTCATCTTGGCGAAGCTTACAATGAATGGGTTCACCAACCTATTGTCAGCAAGGAAGGCCCGAGATTTTTTGCAAATGACTATTTGGAGCTCTTGACTCGCACAGCATGGTGGGTGATTCCACTTGTTTGGCTGCCTGTAGCATCCTGGTTAGTCTCCATGTCTTTTCGAATGGGGCTTACTTTAGCTCAGGTACCTTTAGCAGTGGTTGGTGGCATCTTTATTTGGACACTGTTGGAGTATGGTTTGCATCGCTTCCCTCTTCATATGAAATCAACAAGCTATTGGCACCCTATGGATGGGATGCGCATTGTTTTCCCCCCTGCAGTGACAGCTATTCTCTGTGTGCCGTTTTGGAATATGTCTAGGCTTTTATCACCTCCATCAGTTGCTCCGGCTTTGTTTGGAGGAACCTTACTGGGATATGTAGCATATGATGTCACTCATTACTACCTGCACCATGGGAAGCCATACAAAAGATTGACTCAAGATCTGAAGAAATATCACTTGAACCATCACTTCAGAAATCACAGTAAGGGATTCGGGATCACTTCCTCCTTTTGGGACAATGTTTTCCGAACAGTGCCTTCAACAAAAACTGCCGAGAAAATGAGTAACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016491 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071704 GO:0080132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5 FA_hydroxylase

Protein Analysis

225

Amino Acids

25.87

Weight (kDa)

9.52

Isoelectric Point (pI)

32.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	88 - 212	4e-10	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34770 AT4G20870 AT4G20870
fragaria_vesca	FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10760 FvH4_3g10760 FvH4_3g10760 FvH4_3g10780 FvH4_3g10780 FvH4_3g10780
malus_domestica	MD05G1268900.v1.1
prunus_persica	Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1
pyrus_communis	pycom05g25190 pycom10g20540
rosa_chinensis	RchiOBHm_Chr5g0017441 RchiOBHm_Chr5g0017481 RchiOBHm_Chr5g0017491 RchiOBHm_Chr5g0017501
rosa_laevigata	RLG00000032287 RLG00000032288 RLG00000032292 RLG00000032294
rosa_multiflora	Rmu_sc0007392.1_g000004 Rmu_sc0013973.1_g000006
rosa_roxburghii	Rroxscaffold_1G00059930 Rroxscaffold_1G00059950
rosa_rugosa	Rorug05G0035400 Rorug05G0035500 Rorug05G0035800 Rorug05G0035900 Rorug05G0036000 Rorug05G0036100 Rorug05G0036200 Rorug05G0036300 Rorug05G0036400 Rorug05G0036500 Rorug05G0036600
rosa_samantha	Rh5AG130200 Rh5AG130400 Rh5BG128400 Rh5BG128600 Rh5CG140900 Rh5DG130400 Rh5DG130600 Rh5DG130700 Rh5DG130800 Rh7BG398200
rosa_wichuraiana	Rw5G011240 Rw5G011250 Rw5G011260 Rw5G011270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	362
Acc36I	ACCTGC	1 cut(s)	516
Acc65I	GGTACC	1 cut(s)	247
AccB1I	GGYRCC	2 cut(s)	247, 342
AclWI	GGATC	1 cut(s)	608
AcuI	CTGAAG	2 cut(s)	559, 569
AfaI	GTAC	1 cut(s)	249
AfiI	CCNNNNNNNGG	2 cut(s)	353, 615
AgsI	TTSAA	2 cut(s)	565, 645
AjnI	CCWGG	2 cut(s)	48, 200
AluBI	AGCT	5 cut(s)	71, 145, 242, 336, 389
AluI	AGCT	5 cut(s)	71, 145, 242, 336, 389
Alw21I	GWGCWC	1 cut(s)	147
Alw26I	GTCTC	1 cut(s)	214
AlwI	GGATC	1 cut(s)	608
Ama87I	CYCGRG	1 cut(s)	115
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	1 cut(s)	187
Asp700I	GAANNNNTTC	1 cut(s)	84
Asp718I	GGTACC	1 cut(s)	247
AspLEI	GCGC	1 cut(s)	363
AspS9I	GGNCC	1 cut(s)	113
AsuHPI	GGTGA	3 cut(s)	80, 181, 423
AsuII	TTCGAA	1 cut(s)	223
AvaI	CYCGRG	1 cut(s)	115
BanI	GGYRCC	2 cut(s)	247, 342
BanII	GRGCYC	1 cut(s)	147
BbsI	GAAGAC	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	147
BbvI	GCAGC	1 cut(s)	174
BccI	CCATC	3 cut(s)	347, 445, 576
BceAI	ACGGC	1 cut(s)	388
BciT130I	CCWGG	2 cut(s)	50, 202
BcoDI	GTCTC	1 cut(s)	214
BfaI	CTAG	1 cut(s)	420
BfmI	CTRYAG	2 cut(s)	192, 378
BfuAI	ACCTGC	1 cut(s)	516
BglII	AGATCT	1 cut(s)	544
BisI	GCNGC	1 cut(s)	188
BlsI	GCNGC	1 cut(s)	189
Bme1390I	CCNGG	2 cut(s)	50, 202
BmeT110I	CYCGRG	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	3 cut(s)	249, 344, 466
BmrFI	CCNGG	2 cut(s)	50, 202
BmrI	ACTGGG	1 cut(s)	482
BmsI	GCATC	4 cut(s)	206, 279, 313, 348
BmuI	ACTGGG	1 cut(s)	482
BpiI	GAAGAC	1 cut(s)	37
Bpu10I	CCTNAGC	1 cut(s)	243
Bpu14I	TTCGAA	1 cut(s)	223
BpuEI	CTTGAG	1 cut(s)	525
BsaJI	CCNNGG	1 cut(s)	514
Bsc4I	CCNNNNNNNGG	2 cut(s)	353, 615
Bse1I	ACTGG	2 cut(s)	477, 673
BseBI	CCWGG	2 cut(s)	50, 202
BseDI	CCNNGG	1 cut(s)	514
BseGI	GGATG	3 cut(s)	197, 358, 363
BseLI	CCNNNNNNNGG	2 cut(s)	353, 615
BseMII	CTCAG	1 cut(s)	257
BseNI	ACTGG	2 cut(s)	477, 673
BseXI	GCAGC	1 cut(s)	174
BsgI	GTGCAG	1 cut(s)	494
BshFI	GGCC	1 cut(s)	114
BshNI	GGYRCC	2 cut(s)	247, 342
BsiHKAI	GWGCWC	1 cut(s)	147
BsiHKCI	CYCGRG	1 cut(s)	115
BsiSI	CCGG	1 cut(s)	449
BslFI	GGGAC	1 cut(s)	632
BslI	CCNNNNNNNGG	2 cut(s)	353, 615
BsmAI	GTCTC	1 cut(s)	214
BsmFI	GGGAC	1 cut(s)	632
BsnI	GGCC	1 cut(s)	114
BsoBI	CYCGRG	1 cut(s)	115
Bsp119I	TTCGAA	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp143I	GATC	2 cut(s)	544, 600
Bsp19I	CCATGG	1 cut(s)	514
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	1 cut(s)	256
BspLI	GGNNCC	3 cut(s)	249, 344, 466
BspMAI	CTGCAG	1 cut(s)	382
BspMI	ACCTGC	1 cut(s)	516
BspPI	GGATC	1 cut(s)	608
BspT104I	TTCGAA	1 cut(s)	223
BspT107I	GGYRCC	2 cut(s)	247, 342
BsrI	ACTGG	2 cut(s)	477, 673
BssECI	CCNNGG	1 cut(s)	514
BssMI	GATC	2 cut(s)	544, 600
BssT1I	CCWWGG	1 cut(s)	514
Bst2UI	CCWGG	2 cut(s)	50, 202
Bst4CI	ACNGT	4 cut(s)	22, 288, 587, 637
Bst6I	CTCTTC	1 cut(s)	321
BstBI	TTCGAA	1 cut(s)	223
BstDEI	CTNAG	1 cut(s)	243
BstDSI	CCRYGG	1 cut(s)	514
BstF5I	GGATG	3 cut(s)	197, 358, 363
BstHHI	GCGC	1 cut(s)	363
BstKTI	GATC	2 cut(s)	547, 603
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	2 cut(s)	544, 600
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 386
BstNI	CCWGG	2 cut(s)	50, 202
BstSCI	CCNGG	2 cut(s)	48, 200
BstSFI	CTRYAG	2 cut(s)	192, 378
BstV1I	GCAGC	1 cut(s)	174
BstV2I	GAAGAC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	544
BstXI	CCANNNNNNTGG	1 cut(s)	183
BstYI	RGATCY	1 cut(s)	544
BsuRI	GGCC	1 cut(s)	114
BtgI	CCRYGG	1 cut(s)	514
BtgZI	GCGATG	1 cut(s)	290
BtsCI	GGATG	3 cut(s)	197, 358, 363
BtsI	GCAGTG	2 cut(s)	264, 387
BtsIMutI	CAGTG	4 cut(s)	264, 284, 387, 642
BveI	ACCTGC	1 cut(s)	516
CfoI	GCGC	1 cut(s)	363
Cfr13I	GGNCC	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	248
CviAII	CATG	3 cut(s)	162, 214, 515
CviQI	GTAC	1 cut(s)	248
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	2 cut(s)	546, 602
DpnII	GATC	2 cut(s)	544, 600
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
Ecl136II	GAGCTC	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	514
Eco24I	GRGCYC	1 cut(s)	147
Eco53kI	GAGCTC	1 cut(s)	145
Eco57I	CTGAAG	2 cut(s)	559, 569
Eco88I	CYCGRG	1 cut(s)	115
EcoICRI	GAGCTC	1 cut(s)	145
EcoRII	CCWGG	2 cut(s)	48, 200
EcoT14I	CCWWGG	1 cut(s)	514
EcoT38I	GRGCYC	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	514
FaeI	CATG	3 cut(s)	165, 217, 518
FaqI	GGGAC	1 cut(s)	632
FatI	CATG	3 cut(s)	161, 213, 514
FauNDI	CATATG	2 cut(s)	321, 487
Fnu4HI	GCNGC	1 cut(s)	188
FokI	GGATG	3 cut(s)	184, 365, 370
FriOI	GRGCYC	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	188
FspAI	RTGCGCAY	1 cut(s)	362
FspBI	CTAG	1 cut(s)	420
FspI	TGCGCA	1 cut(s)	362
GlaI	GCGC	1 cut(s)	362
GluI	GCNGC	1 cut(s)	188
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	1 cut(s)	449
HhaI	GCGC	1 cut(s)	363
Hin1II	CATG	3 cut(s)	165, 217, 518
Hin6I	GCGC	1 cut(s)	361
HinP1I	GCGC	1 cut(s)	361
HindIII	AAGCTT	1 cut(s)	69
HinfI	GANTC	4 cut(s)	151, 172, 538, 594
HpaII	CCGG	1 cut(s)	449
HphI	GGTGA	3 cut(s)	80, 181, 423
Hpy166II	GTNNAC	2 cut(s)	25, 88
Hpy188I	TCNGA	3 cut(s)	549, 578, 632
Hpy188III	TCNNGA	3 cut(s)	148, 542, 598
Hpy8I	GTNNAC	2 cut(s)	25, 88
HpyAV	CCTTC	2 cut(s)	104, 651
HpyCH4III	ACNGT	4 cut(s)	22, 288, 587, 637
HpyCH4V	TGCA	4 cut(s)	128, 304, 380, 511
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 386
HpyF3I	CTNAG	1 cut(s)	243
Hsp92II	CATG	3 cut(s)	165, 217, 518
HspAI	GCGC	1 cut(s)	361
KpnI	GGTACC	1 cut(s)	251
Kzo9I	GATC	2 cut(s)	544, 600
LmnI	GCTCC	2 cut(s)	142, 451
Lsp1109I	GCAGC	1 cut(s)	174
LweI	GCATC	4 cut(s)	206, 279, 313, 348
MaeI	CTAG	1 cut(s)	420
MaeIII	GTNAC	3 cut(s)	382, 493, 668
MalI	GATC	2 cut(s)	546, 602
MboI	GATC	2 cut(s)	544, 600
MboII	GAAGA	3 cut(s)	37, 308, 562
MflI	RGATCY	1 cut(s)	544
MhlI	GDGCHC	1 cut(s)	147
MlyI	GAGTC	2 cut(s)	145, 532
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	5 cut(s)	48, 324, 444, 455, 619
MroXI	GAANNNNTTC	1 cut(s)	84
MspI	CCGG	1 cut(s)	449
MspR9I	CCNGG	2 cut(s)	50, 202
MvaI	CCWGG	2 cut(s)	50, 202
MwoI	GCNNNNNNNGC	2 cut(s)	111, 386
NcoI	CCATGG	1 cut(s)	514
NdeI	CATATG	2 cut(s)	321, 487
NdeII	GATC	2 cut(s)	544, 600
NlaIII	CATG	3 cut(s)	165, 217, 518
NlaIV	GGNNCC	3 cut(s)	249, 344, 466
NmuCI	GTSAC	2 cut(s)	382, 493
NsbI	TGCGCA	1 cut(s)	362
NspV	TTCGAA	1 cut(s)	223
PdmI	GAANNNNTTC	1 cut(s)	84
PfeI	GAWTC	2 cut(s)	172, 594
PkrI	GCNGC	1 cut(s)	189
PleI	GAGTC	2 cut(s)	145, 532
PpsI	GAGTC	2 cut(s)	145, 532
Psp124BI	GAGCTC	1 cut(s)	147
Psp6I	CCWGG	2 cut(s)	48, 200
PspGI	CCWGG	2 cut(s)	48, 200
PspN4I	GGNNCC	3 cut(s)	249, 344, 466
PspPI	GGNCC	1 cut(s)	113
PstI	CTGCAG	1 cut(s)	382
PsuI	RGATCY	1 cut(s)	544
RsaI	GTAC	1 cut(s)	249
RsaNI	GTAC	1 cut(s)	248
SacI	GAGCTC	1 cut(s)	147
SatI	GCNGC	1 cut(s)	188
Sau3AI	GATC	2 cut(s)	544, 600
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	2 cut(s)	145, 532
ScrFI	CCNGG	2 cut(s)	50, 202
SduI	GDGCHC	1 cut(s)	147
SfaNI	GCATC	4 cut(s)	206, 279, 313, 348
SfcI	CTRYAG	2 cut(s)	192, 378
SfuI	TTCGAA	1 cut(s)	223
SmlI	CTYRAG	1 cut(s)	540
SmoI	CTYRAG	1 cut(s)	540
SspMI	CTAG	1 cut(s)	420
SstI	GAGCTC	1 cut(s)	147
StyD4I	CCNGG	2 cut(s)	48, 200
StyI	CCWWGG	1 cut(s)	514
TaaI	ACNGT	4 cut(s)	22, 288, 587, 637
TaqI	TCGA	1 cut(s)	223
TfiI	GAWTC	2 cut(s)	172, 594
TscAI	CASTG	4 cut(s)	264, 291, 387, 642
TseFI	GTSAC	2 cut(s)	382, 493
TseI	GCWGC	1 cut(s)	187
Tsp45I	GTSAC	2 cut(s)	382, 493
TspDTI	ATGAA	3 cut(s)	93, 308, 338
TspRI	CASTG	4 cut(s)	264, 291, 387, 642
XmnI	GAANNNNTTC	1 cut(s)	84
XspI	CTAG	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.