Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001087

Physical Location & Seq

Genomic Coordinates Forward (+)

6420459 .. 6423657

Gene Structure 3199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g10780.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGTTGCTCAGGACTTCCAAGTTGATTTGAATAAAGGCCTTGTATTCCAGGTTGGCCATCTTGGAGAAGCATATCAAGAATGGGTTCACCAGCCTATTGTCTGTGTGGAAGGCCCTCGATTTTTCGAAAATGAATTTTGGGAGTTCTTGACCCGCACTGTGTGGTGGGCAATTCCTACCATATGGCTTCCGGTGGTGTGTTACTTTATCTCCAAGTCTGTACGGATGGGCCATACCTTTCCTGAAATAGTTCTGATGGTTCTTTTTGGCATTTTTGTGTGGACATTGCTTGAATATACGTTGCATCGTTTCCTTTTCCACATTGAAACAAAGAGCTATTGGGGGAATACCGTACATTATCTTCTCCATGGCTGCCATCACAAACACCCAATGGATGGTTTGCGACTTGTTTTTCCTCCGACTGCAACAGCAATCTTATGTTTTCCGTTCTATAACTTGGTTAAGCTGATGTCCTCCCCCTCTGTTGCTCCTGCTTTATTTGCTGGTGGTTTATTGGGTTATGTCATGTATGATGTTACCCATTACTACCTTCATCATGGTCAGCCATCCAGTAAGGTACCCAAAGATCTCAAGAAATACCACTTGAATCATCACTTCAGGATTCAGGACAAAGGCTTTGGGATAACTTCAAGTCTATGGGACTGGGTGTTTGGAACACTTCCTCAAACCAAAGCTGCTAAAAAGAGTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

238

Amino Acids

27.61

Weight (kDa)

8.81

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	87 - 226	4.2e-16	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34770 AT4G20870 AT4G20870
fragaria_vesca	FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10760 FvH4_3g10760 FvH4_3g10760 FvH4_3g10780 FvH4_3g10780 FvH4_3g10780
malus_domestica	MD05G1268900.v1.1
prunus_persica	Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1
pyrus_communis	pycom05g25190 pycom10g20540
rosa_chinensis	RchiOBHm_Chr5g0017441 RchiOBHm_Chr5g0017481 RchiOBHm_Chr5g0017491 RchiOBHm_Chr5g0017501
rosa_laevigata	RLG00000032287 RLG00000032288 RLG00000032292 RLG00000032294
rosa_multiflora	Rmu_sc0007392.1_g000004 Rmu_sc0013973.1_g000006
rosa_roxburghii	Rroxscaffold_1G00059930 Rroxscaffold_1G00059950
rosa_rugosa	Rorug05G0035400 Rorug05G0035500 Rorug05G0035800 Rorug05G0035900 Rorug05G0036000 Rorug05G0036100 Rorug05G0036200 Rorug05G0036300 Rorug05G0036400 Rorug05G0036500 Rorug05G0036600
rosa_samantha	Rh5AG130200 Rh5AG130400 Rh5BG128400 Rh5BG128600 Rh5CG140900 Rh5DG130400 Rh5DG130600 Rh5DG130700 Rh5DG130800 Rh7BG398200
rosa_wichuraiana	Rw5G011240 Rw5G011250 Rw5G011260 Rw5G011270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	577
AccB1I	GGYRCC	1 cut(s)	577
AccB7I	CCANNNNNTGG	1 cut(s)	395
AciI	CCGC	1 cut(s)	154
AcoI	YGGCCR	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	134
AcuI	CTGAAG	1 cut(s)	601
AdeI	CACNNNGTG	1 cut(s)	162
AfaI	GTAC	3 cut(s)	222, 354, 579
AfiI	CCNNNNNNNGG	1 cut(s)	395
AgsI	TTSAA	5 cut(s)	31, 293, 326, 607, 651
AjnI	CCWGG	1 cut(s)	48
AluBI	AGCT	3 cut(s)	336, 466, 695
AluI	AGCT	3 cut(s)	336, 466, 695
AoxI	GGCC	4 cut(s)	37, 55, 112, 229
ApeKI	GCWGC	2 cut(s)	372, 695
ApoI	RAATTY	1 cut(s)	134
ArsI	GACNNNNNNTTYG	4 cut(s)	620, 652, 653, 685
Asp700I	GAANNNNTTC	2 cut(s)	84, 249
Asp718I	GGTACC	1 cut(s)	577
AspS9I	GGNCC	2 cut(s)	113, 229
AsuHPI	GGTGA	1 cut(s)	80
AsuII	TTCGAA	1 cut(s)	126
BalI	TGGCCA	1 cut(s)	57
BanI	GGYRCC	1 cut(s)	577
BarI	GAAGNNNNNNTAC	2 cut(s)	345, 377
BbvI	GCAGC	2 cut(s)	359, 682
BccI	CCATC	6 cut(s)	66, 220, 250, 384, 389, 574
BciT130I	CCWGG	1 cut(s)	50
BglII	AGATCT	1 cut(s)	586
BisI	GCNGC	2 cut(s)	373, 696
BlsI	GCNGC	2 cut(s)	374, 697
Bme1390I	CCNGG	1 cut(s)	50
BmgT120I	GGNCC	2 cut(s)	113, 229
BmiI	GGNNCC	1 cut(s)	579
BmrFI	CCNGG	1 cut(s)	50
BmrI	ACTGGG	1 cut(s)	673
BmsI	GCATC	1 cut(s)	313
BmuI	ACTGGG	1 cut(s)	673
Bpu10I	CCTNAGC	1 cut(s)	9
Bpu14I	TTCGAA	1 cut(s)	126
BpuEI	CTTGAG	1 cut(s)	575
BsaJI	CCNNGG	1 cut(s)	367
BsaWI	WCCGGW	1 cut(s)	190
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	1 cut(s)	395
Bse1I	ACTGG	2 cut(s)	570, 668
Bse3DI	GCAATG	1 cut(s)	284
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	367
BseGI	GGATG	3 cut(s)	231, 400, 566
BseLI	CCNNNNNNNGG	1 cut(s)	395
BseMI	GCAATG	1 cut(s)	284
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	2 cut(s)	570, 668
BseXI	GCAGC	2 cut(s)	359, 682
BshFI	GGCC	4 cut(s)	39, 57, 114, 231
BshNI	GGYRCC	1 cut(s)	577
BsiSI	CCGG	1 cut(s)	191
BslFI	GGGAC	1 cut(s)	674
BslI	CCNNNNNNNGG	1 cut(s)	395
BsmFI	GGGAC	1 cut(s)	674
BsnI	GGCC	4 cut(s)	39, 57, 114, 231
Bsp119I	TTCGAA	1 cut(s)	126
Bsp143I	GATC	1 cut(s)	586
Bsp19I	CCATGG	1 cut(s)	367
BspACI	CCGC	1 cut(s)	154
BspANI	GGCC	4 cut(s)	39, 57, 114, 231
BspCNI	CTCAG	1 cut(s)	22
BspLI	GGNNCC	1 cut(s)	579
BspT104I	TTCGAA	1 cut(s)	126
BspT107I	GGYRCC	1 cut(s)	577
BsrDI	GCAATG	1 cut(s)	284
BsrI	ACTGG	2 cut(s)	570, 668
BssECI	CCNNGG	1 cut(s)	367
BssMI	GATC	1 cut(s)	586
BssT1I	CCWWGG	1 cut(s)	367
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	2 cut(s)	160, 352
BstBI	TTCGAA	1 cut(s)	126
BstDEI	CTNAG	1 cut(s)	9
BstDSI	CCRYGG	1 cut(s)	367
BstF5I	GGATG	3 cut(s)	231, 400, 566
BstKTI	GATC	1 cut(s)	589
BstMBI	GATC	1 cut(s)	586
BstMWI	GCNNNNNNNGC	1 cut(s)	500
BstNI	CCWGG	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	48
BstV1I	GCAGC	2 cut(s)	359, 682
BstX2I	RGATCY	1 cut(s)	586
BstYI	RGATCY	1 cut(s)	586
BsuRI	GGCC	4 cut(s)	39, 57, 114, 231
BtgI	CCRYGG	1 cut(s)	367
BtsCI	GGATG	3 cut(s)	231, 400, 566
BtsIMutI	CAGTG	1 cut(s)	156
Cfr13I	GGNCC	2 cut(s)	113, 229
Csp6I	GTAC	3 cut(s)	221, 353, 578
CviAII	CATG	3 cut(s)	368, 526, 557
CviQI	GTAC	3 cut(s)	221, 353, 578
DdeI	CTNAG	1 cut(s)	9
DpnI	GATC	1 cut(s)	588
DpnII	GATC	1 cut(s)	586
DraIII	CACNNNGTG	1 cut(s)	162
EaeI	YGGCCR	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	367
Eco147I	AGGCCT	1 cut(s)	39
Eco57I	CTGAAG	1 cut(s)	601
EcoO109I	RGGNCCY	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	48
EcoT14I	CCWWGG	1 cut(s)	367
ErhI	CCWWGG	1 cut(s)	367
FaeI	CATG	3 cut(s)	371, 529, 560
FaqI	GGGAC	1 cut(s)	674
FatI	CATG	3 cut(s)	367, 525, 556
FauI	CCCGC	1 cut(s)	161
FauNDI	CATATG	1 cut(s)	182
Fnu4HI	GCNGC	2 cut(s)	373, 696
FokI	GGATG	3 cut(s)	238, 407, 553
Fsp4HI	GCNGC	2 cut(s)	373, 696
GluI	GCNGC	2 cut(s)	373, 696
HaeIII	GGCC	4 cut(s)	39, 57, 114, 231
HapII	CCGG	1 cut(s)	191
Hin1II	CATG	3 cut(s)	371, 529, 560
HinfI	GANTC	2 cut(s)	607, 622
HpaII	CCGG	1 cut(s)	191
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	2 cut(s)	88, 282
Hpy188I	TCNGA	2 cut(s)	255, 420
Hpy188III	TCNNGA	7 cut(s)	11, 77, 148, 242, 592, 619, 626
Hpy8I	GTNNAC	2 cut(s)	88, 282
HpyAV	CCTTC	2 cut(s)	104, 560
HpyCH4III	ACNGT	2 cut(s)	160, 352
HpyCH4IV	ACGT	1 cut(s)	299
HpyCH4V	TGCA	2 cut(s)	304, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	500
HpyF3I	CTNAG	1 cut(s)	9
HpySE526I	ACGT	1 cut(s)	299
Hsp92II	CATG	3 cut(s)	371, 529, 560
KpnI	GGTACC	1 cut(s)	581
Kzo9I	GATC	1 cut(s)	586
LmnI	GCTCC	1 cut(s)	493
Lsp1109I	GCAGC	2 cut(s)	359, 682
LweI	GCATC	1 cut(s)	313
MaeII	ACGT	1 cut(s)	299
MaeIII	GTNAC	2 cut(s)	200, 535
MalI	GATC	1 cut(s)	588
MboI	GATC	1 cut(s)	586
MboII	GAAGA	1 cut(s)	353
MflI	RGATCY	1 cut(s)	586
MlsI	TGGCCA	1 cut(s)	57
MluCI	AATT	2 cut(s)	134, 171
MluNI	TGGCCA	1 cut(s)	57
MmeI	TCCRAC	1 cut(s)	443
MnlI	CCTC	5 cut(s)	126, 426, 484, 490, 693
Mox20I	TGGCCA	1 cut(s)	57
MroXI	GAANNNNTTC	2 cut(s)	84, 249
MscI	TGGCCA	1 cut(s)	57
MseI	TTAA	1 cut(s)	462
MslI	CAYNNNNRTG	1 cut(s)	275
Msp20I	TGGCCA	1 cut(s)	57
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	1 cut(s)	50
MvaI	CCWGG	1 cut(s)	50
MwoI	GCNNNNNNNGC	1 cut(s)	500
NcoI	CCATGG	1 cut(s)	367
NdeI	CATATG	1 cut(s)	182
NdeII	GATC	1 cut(s)	586
NlaIII	CATG	3 cut(s)	371, 529, 560
NlaIV	GGNNCC	1 cut(s)	579
NspV	TTCGAA	1 cut(s)	126
PceI	AGGCCT	1 cut(s)	39
PdmI	GAANNNNTTC	2 cut(s)	84, 249
PfeI	GAWTC	2 cut(s)	607, 622
PflMI	CCANNNNNTGG	1 cut(s)	395
PkrI	GCNGC	2 cut(s)	374, 697
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	579
PspPI	GGNCC	2 cut(s)	113, 229
PsuI	RGATCY	1 cut(s)	586
RsaI	GTAC	3 cut(s)	222, 354, 579
RsaNI	GTAC	3 cut(s)	221, 353, 578
RseI	CAYNNNNRTG	1 cut(s)	275
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	2 cut(s)	373, 696
Sau3AI	GATC	1 cut(s)	586
Sau96I	GGNCC	2 cut(s)	113, 229
ScrFI	CCNGG	1 cut(s)	50
SetI	ASST	8 cut(s)	54, 239, 302, 338, 468, 552, 579, 697
SfaNI	GCATC	1 cut(s)	313
SfuI	TTCGAA	1 cut(s)	126
SmiMI	CAYNNNNRTG	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
Sse9I	AATT	2 cut(s)	134, 171
SseBI	AGGCCT	1 cut(s)	39
SsiI	CCGC	1 cut(s)	154
StuI	AGGCCT	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	48
StyI	CCWWGG	1 cut(s)	367
TaaI	ACNGT	2 cut(s)	160, 352
TaiI	ACGT	1 cut(s)	302
TaqI	TCGA	2 cut(s)	118, 126
TasI	AATT	2 cut(s)	134, 171
TfiI	GAWTC	2 cut(s)	607, 622
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TscAI	CASTG	1 cut(s)	163
TseI	GCWGC	2 cut(s)	372, 695
TspDTI	ATGAA	2 cut(s)	147, 542
TspGWI	ACGGA	2 cut(s)	238, 435
TspRI	CASTG	1 cut(s)	163
Van91I	CCANNNNNTGG	1 cut(s)	395
XapI	RAATTY	1 cut(s)	134
XmnI	GAANNNNTTC	2 cut(s)	84, 249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.