Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001087

Physical Location & Seq

Genomic Coordinates Forward (+)

12576090 .. 12580373

Gene Structure 4284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG130400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGTCTTTTCGAATGGGGCTTACTTTACCTCAGGTAGCTTTAGCAGTGGTTGGTGGCATCTTTATTTGGACATTGATGGAGTATGTTTTGCATCGCTTCCTTTTTCATATGAAAACAACAGGCTATTGGGGAAACACCATTCATTATCTTTTTCATGGTTGCCATCACAAGCACCCTATGGATGGGATGCGCCTTGTTTTTCCCCCTGCTGCGACAGCTATTCTCTGTGTGCCGTTTTGGAATACGTTTAGGCTTTTATCACCCCCATCAGTTGCTCCGGCTTTGTTTGGAGGAACCTTGTTGGGATATGTAGCATATGATGTCACTCATTACTACCTGCACCATGGGAAGCCATACAAAACATTGACTCAAGATCTGAAGAGATATCACTTGAACCATCACTTCAGAAATCAAAGTAAGGGATTCGGGATCACTTCCCCTTTATGGGACAATGTTTTCGGAACAGTGCCTTCAACAAAAGCTGCCGAGAAAATGAGTAACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016491 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071704 GO:0080132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5 FA_hydroxylase

Protein Analysis

168

Amino Acids

19.19

Weight (kDa)

9.66

Isoelectric Point (pI)

45.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	17 - 155	8.9e-18	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34770 AT4G20870 AT4G20870
fragaria_vesca	FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10760 FvH4_3g10760 FvH4_3g10760 FvH4_3g10780 FvH4_3g10780 FvH4_3g10780
malus_domestica	MD05G1268900.v1.1
prunus_persica	Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1
pyrus_communis	pycom05g25190 pycom10g20540
rosa_chinensis	RchiOBHm_Chr5g0017441 RchiOBHm_Chr5g0017481 RchiOBHm_Chr5g0017491 RchiOBHm_Chr5g0017501
rosa_laevigata	RLG00000032287 RLG00000032288 RLG00000032292 RLG00000032294
rosa_multiflora	Rmu_sc0007392.1_g000004 Rmu_sc0013973.1_g000006
rosa_roxburghii	Rroxscaffold_1G00059930 Rroxscaffold_1G00059950
rosa_rugosa	Rorug05G0035400 Rorug05G0035500 Rorug05G0035800 Rorug05G0035900 Rorug05G0036000 Rorug05G0036100 Rorug05G0036200 Rorug05G0036300 Rorug05G0036400 Rorug05G0036500 Rorug05G0036600
rosa_samantha	Rh5AG130200 Rh5AG130400 Rh5BG128400 Rh5BG128600 Rh5CG140900 Rh5DG130400 Rh5DG130600 Rh5DG130700 Rh5DG130800 Rh7BG398200
rosa_wichuraiana	Rw5G011240 Rw5G011250 Rw5G011260 Rw5G011270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	345
AclWI	GGATC	1 cut(s)	437
AcuI	CTGAAG	2 cut(s)	388, 398
AfiI	CCNNNNNNNGG	3 cut(s)	182, 444, 445
AgsI	TTSAA	2 cut(s)	394, 474
AluBI	AGCT	3 cut(s)	38, 218, 482
AluI	AGCT	3 cut(s)	38, 218, 482
AlwI	GGATC	1 cut(s)	437
ApeKI	GCWGC	2 cut(s)	209, 482
ArsI	GACNNNNNNTTYG	2 cut(s)	440, 472
AspLEI	GCGC	1 cut(s)	192
AsuHPI	GGTGA	1 cut(s)	252
AsuII	TTCGAA	1 cut(s)	10
AxyI	CCTNAGG	1 cut(s)	30
BbvI	GCAGC	2 cut(s)	196, 469
BccI	CCATC	5 cut(s)	70, 171, 176, 274, 405
BceAI	ACGGC	1 cut(s)	217
BfuAI	ACCTGC	1 cut(s)	345
BglII	AGATCT	1 cut(s)	373
BisI	GCNGC	2 cut(s)	210, 483
BlsI	GCNGC	2 cut(s)	211, 484
BmiI	GGNNCC	1 cut(s)	295
BmsI	GCATC	3 cut(s)	66, 100, 177
Bpu14I	TTCGAA	1 cut(s)	10
BpuEI	CTTGAG	1 cut(s)	354
BsaJI	CCNNGG	1 cut(s)	343
Bsc4I	CCNNNNNNNGG	3 cut(s)	182, 444, 445
Bse1I	ACTGG	1 cut(s)	502
Bse21I	CCTNAGG	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	343
BseGI	GGATG	2 cut(s)	187, 192
BseLI	CCNNNNNNNGG	3 cut(s)	182, 444, 445
BseMII	CTCAG	1 cut(s)	44
BseNI	ACTGG	1 cut(s)	502
BseXI	GCAGC	2 cut(s)	196, 469
BsgI	GTGCAG	1 cut(s)	323
BsiSI	CCGG	1 cut(s)	278
BslFI	GGGAC	1 cut(s)	461
BslI	CCNNNNNNNGG	3 cut(s)	182, 444, 445
BsmFI	GGGAC	1 cut(s)	461
Bsp119I	TTCGAA	1 cut(s)	10
Bsp143I	GATC	2 cut(s)	373, 429
Bsp19I	CCATGG	1 cut(s)	343
BspCNI	CTCAG	1 cut(s)	43
BspLI	GGNNCC	1 cut(s)	295
BspMI	ACCTGC	1 cut(s)	345
BspPI	GGATC	1 cut(s)	437
BspT104I	TTCGAA	1 cut(s)	10
BsrI	ACTGG	1 cut(s)	502
BssECI	CCNNGG	1 cut(s)	343
BssMI	GATC	2 cut(s)	373, 429
BssT1I	CCWWGG	1 cut(s)	343
Bst4CI	ACNGT	1 cut(s)	466
Bst6I	CTCTTC	1 cut(s)	374
BstBI	TTCGAA	1 cut(s)	10
BstDEI	CTNAG	1 cut(s)	30
BstDSI	CCRYGG	1 cut(s)	343
BstF5I	GGATG	2 cut(s)	187, 192
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	2 cut(s)	376, 432
BstMBI	GATC	2 cut(s)	373, 429
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstV1I	GCAGC	2 cut(s)	196, 469
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
Bsu36I	CCTNAGG	1 cut(s)	30
BtgI	CCRYGG	1 cut(s)	343
BtgZI	GCGATG	1 cut(s)	77
BtsCI	GGATG	2 cut(s)	187, 192
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	2 cut(s)	51, 471
BveI	ACCTGC	1 cut(s)	345
CfoI	GCGC	1 cut(s)	192
CviAII	CATG	2 cut(s)	155, 344
CviJI	RGCY	8 cut(s)	19, 38, 123, 218, 253, 281, 352, 482
CviKI_1	RGCY	8 cut(s)	19, 38, 123, 218, 253, 281, 352, 482
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	2 cut(s)	375, 431
DpnII	GATC	2 cut(s)	373, 429
Eam1104I	CTCTTC	1 cut(s)	374
EarI	CTCTTC	1 cut(s)	374
Eco130I	CCWWGG	1 cut(s)	343
Eco32I	GATATC	1 cut(s)	386
Eco57I	CTGAAG	2 cut(s)	388, 398
Eco81I	CCTNAGG	1 cut(s)	30
EcoRV	GATATC	1 cut(s)	386
EcoT14I	CCWWGG	1 cut(s)	343
ErhI	CCWWGG	1 cut(s)	343
FaeI	CATG	2 cut(s)	158, 347
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	2 cut(s)	154, 343
FauNDI	CATATG	2 cut(s)	108, 316
Fnu4HI	GCNGC	2 cut(s)	210, 483
FokI	GGATG	2 cut(s)	194, 199
Fsp4HI	GCNGC	2 cut(s)	210, 483
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	2 cut(s)	210, 483
HapII	CCGG	1 cut(s)	278
HhaI	GCGC	1 cut(s)	192
Hin1II	CATG	2 cut(s)	158, 347
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HinfI	GANTC	2 cut(s)	367, 423
HpaII	CCGG	1 cut(s)	278
HphI	GGTGA	1 cut(s)	252
Hpy188I	TCNGA	3 cut(s)	378, 407, 461
Hpy188III	TCNNGA	2 cut(s)	371, 427
HpyAV	CCTTC	1 cut(s)	480
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4IV	ACGT	1 cut(s)	245
HpyCH4V	TGCA	2 cut(s)	91, 340
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	1 cut(s)	30
HpySE526I	ACGT	1 cut(s)	245
Hsp92II	CATG	2 cut(s)	158, 347
HspAI	GCGC	1 cut(s)	190
Kzo9I	GATC	2 cut(s)	373, 429
LmnI	GCTCC	1 cut(s)	280
LpnPI	CCDG	5 cut(s)	17, 105, 219, 291, 350
Lsp1109I	GCAGC	2 cut(s)	196, 469
LweI	GCATC	3 cut(s)	66, 100, 177
MaeII	ACGT	1 cut(s)	245
MaeIII	GTNAC	2 cut(s)	322, 497
MalI	GATC	2 cut(s)	375, 431
MboI	GATC	2 cut(s)	373, 429
MboII	GAAGA	1 cut(s)	391
MflI	RGATCY	1 cut(s)	373
MlyI	GAGTC	1 cut(s)	361
MnlI	CCTC	2 cut(s)	39, 284
MspI	CCGG	1 cut(s)	278
MwoI	GCNNNNNNNGC	1 cut(s)	215
NcoI	CCATGG	1 cut(s)	343
NdeI	CATATG	2 cut(s)	108, 316
NdeII	GATC	2 cut(s)	373, 429
NlaIII	CATG	2 cut(s)	158, 347
NlaIV	GGNNCC	1 cut(s)	295
NmuCI	GTSAC	1 cut(s)	322
NspV	TTCGAA	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	423
PkrI	GCNGC	2 cut(s)	211, 484
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
PspN4I	GGNNCC	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	373
SatI	GCNGC	2 cut(s)	210, 483
Sau3AI	GATC	2 cut(s)	373, 429
SchI	GAGTC	1 cut(s)	361
SetI	ASST	8 cut(s)	31, 36, 40, 220, 248, 299, 339, 484
SfaNI	GCATC	3 cut(s)	66, 100, 177
SfuI	TTCGAA	1 cut(s)	10
SmlI	CTYRAG	1 cut(s)	369
SmoI	CTYRAG	1 cut(s)	369
StyI	CCWWGG	1 cut(s)	343
TaaI	ACNGT	1 cut(s)	466
TaiI	ACGT	1 cut(s)	248
TaqI	TCGA	1 cut(s)	10
TfiI	GAWTC	1 cut(s)	423
TscAI	CASTG	2 cut(s)	51, 471
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	2 cut(s)	209, 482
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	4 cut(s)	95, 125, 131, 143
TspRI	CASTG	2 cut(s)	51, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.