Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001087

Physical Location & Seq

Genomic Coordinates Reverse (-)

40425580 .. 40428871

Gene Structure 3292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1268900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGCAAAATGCTGTTTGCAGTGTTATACGTAACAAGATGGTTGCGCAGGACTTCCAAGTTGATTTGAATAAAGCCCTCGTGTTTCAGGTTGGCCATCTTGGAGAAGCATACCAAGAGTGGGTTCACCAGCCGATTGTCAGCAAGGAAGGCCCTCGATTTTTTGAAAGTGAATTTTGGGAGTTCTTAACCCGCACTGTGTGGTGGGCAGTTCCTGTCATATGGCTACCAGTTGTGTTTTATGCCATCTCAGTGTCTGTACGGATGGGCCATACATTCCCTGAAGTTGCTCTGACAGTTGTTGCTGGCATTTTTGTCTGGACATTGATGGAATACACGTTGCACCGCTTTCTTTTCCACATTGAAACAAAGAGCTACTGGGGGAACACTTTACATTATCTTCTTCACGGCTGCCACCATAAGCACCCAATGGACGGCCTGCGACTTGTTTTCCCTCCTGCTGCGACAGCTATTTTATGCATTCCATTCTGGAACTTGGTGAAGCTGATGTCTTCTCCTACTTTTGCTCCTGCTTTGTTTGGAGGCGGTTTATTGGGCTATGTGATGTATGATTGCACCCATTACTATCTTCATCACGGTCAGCCAACAAGTGAGGTACCCCGAAATCTGAAGAGATACCACTTGAATCATCACTTCAGGATCCAAGATAAGGGCTTCGGAATAACTTCAAGCATATGGGACAGGGTGTTCGGAACACTTCCACAACCGAAGGCAGCCAAGAAAGTTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

250

Amino Acids

28.76

Weight (kDa)

8.94

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	99 - 238	3e-17	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34770 AT4G20870 AT4G20870
fragaria_vesca	FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10760 FvH4_3g10760 FvH4_3g10760 FvH4_3g10780 FvH4_3g10780 FvH4_3g10780
malus_domestica	MD05G1268900.v1.1
prunus_persica	Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1
pyrus_communis	pycom05g25190 pycom10g20540
rosa_chinensis	RchiOBHm_Chr5g0017441 RchiOBHm_Chr5g0017481 RchiOBHm_Chr5g0017491 RchiOBHm_Chr5g0017501
rosa_laevigata	RLG00000032287 RLG00000032288 RLG00000032292 RLG00000032294
rosa_multiflora	Rmu_sc0007392.1_g000004 Rmu_sc0013973.1_g000006
rosa_roxburghii	Rroxscaffold_1G00059930 Rroxscaffold_1G00059950
rosa_rugosa	Rorug05G0035400 Rorug05G0035500 Rorug05G0035800 Rorug05G0035900 Rorug05G0036000 Rorug05G0036100 Rorug05G0036200 Rorug05G0036300 Rorug05G0036400 Rorug05G0036500 Rorug05G0036600
rosa_samantha	Rh5AG130200 Rh5AG130400 Rh5BG128400 Rh5BG128600 Rh5CG140900 Rh5DG130400 Rh5DG130600 Rh5DG130700 Rh5DG130800 Rh7BG398200
rosa_wichuraiana	Rw5G011240 Rw5G011250 Rw5G011260 Rw5G011270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	45
Acc65I	GGTACC	1 cut(s)	613
AccB1I	GGYRCC	1 cut(s)	613
AciI	CCGC	3 cut(s)	190, 343, 543
AclWI	GGATC	2 cut(s)	652, 665
AcoI	YGGCCR	1 cut(s)	91
AcsI	RAATTY	1 cut(s)	170
AcuI	CTGAAG	3 cut(s)	300, 637, 647
AdeI	CACNNNGTG	1 cut(s)	198
AfaI	GTAC	2 cut(s)	258, 615
AfiI	CCNNNNNNNGG	3 cut(s)	118, 431, 667
AflIII	ACRYGT	1 cut(s)	333
AgsI	TTSAA	5 cut(s)	67, 164, 362, 643, 687
AjuI	GAANNNNNNNTTGG	2 cut(s)	105, 137
AloI	GAACNNNNNNTCC	2 cut(s)	689, 721
AluBI	AGCT	3 cut(s)	372, 467, 502
AluI	AGCT	3 cut(s)	372, 467, 502
AlwI	GGATC	2 cut(s)	652, 665
AlwNI	CAGNNNCTG	2 cut(s)	212, 254
AoxI	GGCC	4 cut(s)	91, 148, 265, 433
ApeKI	GCWGC	3 cut(s)	408, 458, 731
ApoI	RAATTY	1 cut(s)	170
ArsI	GACNNNNNNTTYG	2 cut(s)	689, 721
Asp700I	GAANNNNTTC	1 cut(s)	682
Asp718I	GGTACC	1 cut(s)	613
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	2 cut(s)	149, 265
AsuHPI	GGTGA	2 cut(s)	116, 508
BalI	TGGCCA	1 cut(s)	93
BamHI	GGATCC	1 cut(s)	657
BanI	GGYRCC	1 cut(s)	613
BauI	CACGAG	1 cut(s)	77
BbsI	GAAGAC	1 cut(s)	501
BbvI	GCAGC	3 cut(s)	395, 445, 743
BccI	CCATC	5 cut(s)	31, 102, 251, 256, 319
BceAI	ACGGC	2 cut(s)	421, 448
BisI	GCNGC	3 cut(s)	409, 459, 732
BlsI	GCNGC	3 cut(s)	410, 460, 733
BmgT120I	GGNCC	2 cut(s)	149, 265
BmiI	GGNNCC	2 cut(s)	615, 659
BmrI	ACTGGG	1 cut(s)	385
BmuI	ACTGGG	1 cut(s)	385
BpiI	GAAGAC	1 cut(s)	501
BsaAI	YACGTR	1 cut(s)	29
BsaXI	ACNNNNNCTCC	2 cut(s)	508, 538
Bsc4I	CCNNNNNNNGG	3 cut(s)	118, 431, 667
Bse1I	ACTGG	2 cut(s)	227, 380
BseGI	GGATG	1 cut(s)	267
BseLI	CCNNNNNNNGG	3 cut(s)	118, 431, 667
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	2 cut(s)	227, 380
BseXI	GCAGC	3 cut(s)	395, 445, 743
BshFI	GGCC	4 cut(s)	93, 150, 267, 435
BshNI	GGYRCC	1 cut(s)	613
BslFI	GGGAC	1 cut(s)	710
BslI	CCNNNNNNNGG	3 cut(s)	118, 431, 667
BsmFI	GGGAC	1 cut(s)	710
BsmI	GAATGC	1 cut(s)	477
BsnI	GGCC	4 cut(s)	93, 150, 267, 435
Bsp143I	GATC	1 cut(s)	657
BspACI	CCGC	3 cut(s)	190, 343, 543
BspANI	GGCC	4 cut(s)	93, 150, 267, 435
BspCNI	CTCAG	1 cut(s)	260
BspLI	GGNNCC	2 cut(s)	615, 659
BspPI	GGATC	2 cut(s)	652, 665
BspT107I	GGYRCC	1 cut(s)	613
BsrI	ACTGG	2 cut(s)	227, 380
BssMI	GATC	1 cut(s)	657
BssSI	CACGAG	1 cut(s)	77
Bst2BI	CACGAG	1 cut(s)	77
Bst4CI	ACNGT	3 cut(s)	196, 295, 596
Bst6I	CTCTTC	1 cut(s)	623
BstBAI	YACGTR	1 cut(s)	29
BstC8I	GCNNGC	2 cut(s)	304, 437
BstDEI	CTNAG	1 cut(s)	247
BstF5I	GGATG	1 cut(s)	267
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	1 cut(s)	660
BstMBI	GATC	1 cut(s)	657
BstMWI	GCNNNNNNNGC	2 cut(s)	147, 464
BstSNI	TACGTA	1 cut(s)	29
BstV1I	GCAGC	3 cut(s)	395, 445, 743
BstV2I	GAAGAC	1 cut(s)	501
BstX2I	RGATCY	1 cut(s)	657
BstYI	RGATCY	1 cut(s)	657
BsuRI	GGCC	4 cut(s)	93, 150, 267, 435
BtsCI	GGATG	1 cut(s)	267
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	3 cut(s)	25, 192, 255
Cac8I	GCNNGC	2 cut(s)	304, 437
CaiI	CAGNNNCTG	2 cut(s)	212, 254
CfoI	GCGC	1 cut(s)	46
Cfr13I	GGNCC	2 cut(s)	149, 265
Csp6I	GTAC	2 cut(s)	257, 614
CviQI	GTAC	2 cut(s)	257, 614
DdeI	CTNAG	1 cut(s)	247
DpnI	GATC	1 cut(s)	659
DpnII	GATC	1 cut(s)	657
DraIII	CACNNNGTG	1 cut(s)	198
EaeI	YGGCCR	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	623
EarI	CTCTTC	1 cut(s)	623
Eco105I	TACGTA	1 cut(s)	29
Eco57I	CTGAAG	3 cut(s)	300, 637, 647
EcoO109I	RGGNCCY	1 cut(s)	149
EcoT22I	ATGCAT	1 cut(s)	479
FaqI	GGGAC	1 cut(s)	710
FauI	CCCGC	1 cut(s)	197
FauNDI	CATATG	2 cut(s)	218, 692
Fnu4HI	GCNGC	3 cut(s)	409, 459, 732
FokI	GGATG	1 cut(s)	274
Fsp4HI	GCNGC	3 cut(s)	409, 459, 732
FspI	TGCGCA	1 cut(s)	45
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	3 cut(s)	409, 459, 732
HaeIII	GGCC	4 cut(s)	93, 150, 267, 435
HhaI	GCGC	1 cut(s)	46
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HinfI	GANTC	1 cut(s)	643
HphI	GGTGA	2 cut(s)	116, 508
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	4 cut(s)	291, 627, 677, 710
Hpy188III	TCNNGA	3 cut(s)	316, 487, 655
Hpy8I	GTNNAC	1 cut(s)	124
HpyAV	CCTTC	2 cut(s)	140, 721
HpyCH4III	ACNGT	3 cut(s)	196, 295, 596
HpyCH4IV	ACGT	2 cut(s)	28, 335
HpyCH4V	TGCA	5 cut(s)	4, 18, 340, 477, 573
HpyF10VI	GCNNNNNNNGC	2 cut(s)	147, 464
HpyF3I	CTNAG	1 cut(s)	247
HpySE526I	ACGT	2 cut(s)	28, 335
HspAI	GCGC	1 cut(s)	44
KpnI	GGTACC	1 cut(s)	617
Kzo9I	GATC	1 cut(s)	657
LmnI	GCTCC	1 cut(s)	529
Lsp1109I	GCAGC	3 cut(s)	395, 445, 743
MaeII	ACGT	2 cut(s)	28, 335
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	1 cut(s)	659
MboI	GATC	1 cut(s)	657
MboII	GAAGA	5 cut(s)	389, 392, 501, 578, 640
MflI	RGATCY	1 cut(s)	657
MlsI	TGGCCA	1 cut(s)	93
MluCI	AATT	1 cut(s)	170
MluNI	TGGCCA	1 cut(s)	93
MnlI	CCTC	5 cut(s)	86, 162, 462, 533, 604
Mox20I	TGGCCA	1 cut(s)	93
Mph1103I	ATGCAT	1 cut(s)	479
MroXI	GAANNNNTTC	1 cut(s)	682
MscI	TGGCCA	1 cut(s)	93
MseI	TTAA	1 cut(s)	185
MslI	CAYNNNNRTG	1 cut(s)	248
Msp20I	TGGCCA	1 cut(s)	93
Mva1269I	GAATGC	1 cut(s)	477
MwoI	GCNNNNNNNGC	2 cut(s)	147, 464
NdeI	CATATG	2 cut(s)	218, 692
NdeII	GATC	1 cut(s)	657
NlaIV	GGNNCC	2 cut(s)	615, 659
NsbI	TGCGCA	1 cut(s)	45
NsiI	ATGCAT	1 cut(s)	479
PctI	GAATGC	1 cut(s)	477
PdmI	GAANNNNTTC	1 cut(s)	682
PfeI	GAWTC	1 cut(s)	643
PkrI	GCNGC	3 cut(s)	410, 460, 733
Ppu21I	YACGTR	1 cut(s)	29
PspN4I	GGNNCC	2 cut(s)	615, 659
PspPI	GGNCC	2 cut(s)	149, 265
PstNI	CAGNNNCTG	2 cut(s)	212, 254
PsuI	RGATCY	1 cut(s)	657
RsaI	GTAC	2 cut(s)	258, 615
RsaNI	GTAC	2 cut(s)	257, 614
RseI	CAYNNNNRTG	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	185
SatI	GCNGC	3 cut(s)	409, 459, 732
Sau3AI	GATC	1 cut(s)	657
Sau96I	GGNCC	2 cut(s)	149, 265
SetI	ASST	7 cut(s)	31, 90, 338, 374, 469, 504, 615
SmiMI	CAYNNNNRTG	1 cut(s)	248
SnaBI	TACGTA	1 cut(s)	29
Sse9I	AATT	1 cut(s)	170
SsiI	CCGC	3 cut(s)	190, 343, 543
TaaI	ACNGT	3 cut(s)	196, 295, 596
TaiI	ACGT	2 cut(s)	31, 338
TaqI	TCGA	1 cut(s)	154
TasI	AATT	1 cut(s)	170
TfiI	GAWTC	1 cut(s)	643
Tru1I	TTAA	1 cut(s)	185
Tru9I	TTAA	1 cut(s)	185
TscAI	CASTG	3 cut(s)	25, 199, 255
TseI	GCWGC	3 cut(s)	408, 458, 731
TspDTI	ATGAA	1 cut(s)	578
TspGWI	ACGGA	1 cut(s)	274
TspRI	CASTG	3 cut(s)	25, 199, 255
XapI	RAATTY	1 cut(s)	170
XmnI	GAANNNNTTC	1 cut(s)	682
Zsp2I	ATGCAT	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.