AT2G36840

ACT domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0004386
Physical Location & Seq
Reverse (-)
15451520 .. 15453819
2300 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G36840.1

Sequence Viewer

Length: 1233 bp
ATGGGAATTTTGTCGGACGACGTAGTGATAATCAGTCAATCGGAGAAAGAAGGTGACCCGAGTGTTATAACCATCAATTGTCCTGACAAAACTGGTCTGGGTTGTGATCTCTGTCGTATCCTCCTCTTCTTCGGCCTCAACATTGTCAGAGGAGATGTCTCAACTGATGGAAAATGGTGCTACTTGGTCTTCTGGGTGATTGGGAAACCAAACACGAGATGGAATCTGTTGAAGATGAGACTTGTAGAGGCAAGTCCTTCTTTTTCTTGGGCCTTTGGTATCTCAAGATGTTACCTTTCTGATTCTGAGTCTCAGCCTCCCAAGCTTCCTGATCTTTTCTTATTGAAGCTAGCTTGTTCTGACCGCACAGGGCTTCTTTATGATGTCACAGAGGTTCTTTACAAGCTTGAGATTAACATTGAGAAAGTTAAGATATCGACTACCCCTGATGGAAAAGTGATGGACTTGTTCTTTGTCACAGACACTAGAGAGCTTTTAGGGACGGTTAAGAGGCGGAATGAAGTGTATGAGTACCTGAGAGATGCTATAGGAGATTCAATGATCAGCTATGACATTGAACTTGTTGGCCCTGAAATCACAGCTTGCTCAACTTCCTCGTCGGTTGCAGAAACATTGTTCTCCTCGGATGTGTCGGGAGAGCATTCGAGTGGGTTACACACTTCAAGCAATGTTTCTATTGCAGTTGACAACTCGCTAAGCTCAGCTCACACCCTCATTCATATCACTTGTCAAGATCACAAAGGTCTTCTCTATGATATTATGAGGACCTTCAAGGATTTCAACATTCAGATCTCATATGGGCGTTTTACAATCAAACTAGGAAAGAACTGTGAGATCGACTTGTTCATAGTGCAATCTGATGGCCGAAAGATCCTTGACTCGAGCAAGCTAAATGCATTGATTACTCGTTTAAGAGCAGAGCTACAGCAACCTCTGAGAGTGGTAATGATGAATCGAGGTCCAGATACTGAACTTCTAGTCACAAACCCAGTTGAGTTATCAGGAAAGGGACGGCCACAAGTCTTCCACGACATAGCACTTGCCCTCAAGAAGATCGATACCTGCATCTTCTCGGCTGAAATTGGAAGACACGTGACTGGAGACAGAGAATGGGAGGTGTACAAAGTGTTGATCAACGAAGAAGACAGCTTACCAATCCCGAGAAGCAAGATAGAGGAAGAAGTATGGAAAACTTTGATGGGCTGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ACT

Protein Analysis

410

Amino Acids

46.05

Weight (kDa)

5.22

Isoelectric Point (pI)

40.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACR10_N PF24914 11 - 86 8e-38 ACT domain-containing protein ACR10, N-terminal
ACT PF01842 117 - 174 6.6e-09 ACT domain
ACT_ACR9_3rd PF24931 232 - 329 4.3e-44 ACR9-like, ACT-like domain
ACT_ACR9_C PF24926 330 - 408 4.2e-36 ACT domain-containing protein ACR9, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 68
Acc36I ACCTGC 1 cut(s) 1091
AciI CCGC 2 cut(s) 364, 514
AclWI GGATC 1 cut(s) 886
AcoI YGGCCR 2 cut(s) 883, 1034
AcsI RAATTY 1 cut(s) 6
AcvI CACGTG 1 cut(s) 1114
AfaI GTAC 2 cut(s) 533, 1142
AflIII ACRYGT 1 cut(s) 1111
AgsI TTSAA 7 cut(s) 232, 346, 558, 578, 684, 793, 802
Alw26I GTCTC 4 cut(s) 163, 232, 315, 1116
AlwI GGATC 1 cut(s) 886
AlwNI CAGNNNCTG 1 cut(s) 989
Ama87I CYCGRG 3 cut(s) 58, 901, 1180
AoxI GGCC 5 cut(s) 133, 270, 586, 883, 1034
ApoI RAATTY 1 cut(s) 6
ArsI GACNNNNNNTTYG 2 cut(s) 455, 487
AspS9I GGNCC 4 cut(s) 270, 587, 786, 980
AsuHPI GGTGA 2 cut(s) 65, 208
AsuNHI GCTAGC 1 cut(s) 349
AvaI CYCGRG 3 cut(s) 58, 901, 1180
AvaII GGWCC 2 cut(s) 786, 980
BarI GAAGNNNNNNTAC 2 cut(s) 1155, 1187
BauI CACGAG 1 cut(s) 214
BbrPI CACGTG 1 cut(s) 1114
BbsI GAAGAC 5 cut(s) 181, 758, 1036, 1114, 1170
BccI CCATC 7 cut(s) 80, 161, 213, 443, 454, 875, 1213
BceAI ACGGC 1 cut(s) 1049
BciVI GTATCC 1 cut(s) 128
BclI TGATCA 2 cut(s) 561, 1152
BcoDI GTCTC 4 cut(s) 163, 232, 315, 1116
BfaI CTAG 4 cut(s) 350, 486, 839, 998
BfmI CTRYAG 2 cut(s) 546, 944
BfuAI ACCTGC 1 cut(s) 1091
BfuI GTATCC 1 cut(s) 128
BglII AGATCT 1 cut(s) 810
BlpI GCTNAGC 2 cut(s) 716, 721
Bme18I GGWCC 2 cut(s) 786, 980
BmeT110I CYCGRG 3 cut(s) 58, 901, 1180
BmgT120I GGNCC 4 cut(s) 270, 587, 786, 980
BmrI ACTGGG 1 cut(s) 1004
BmsI GCATC 2 cut(s) 532, 1095
BmtI GCTAGC 1 cut(s) 353
BmuI ACTGGG 1 cut(s) 1004
BpiI GAAGAC 5 cut(s) 181, 758, 1036, 1114, 1170
BpmI CTGGAG 1 cut(s) 1140
Bpu1102I GCTNAGC 2 cut(s) 716, 721
BpuEI CTTGAG 3 cut(s) 268, 428, 1052
Bsa29I ATCGAT 1 cut(s) 1077
BsaAI YACGTR 1 cut(s) 1114
BsaJI CCNNGG 1 cut(s) 642
Bse1I ACTGG 3 cut(s) 97, 1010, 1123
Bse3DI GCAATG 1 cut(s) 694
BseCI ATCGAT 1 cut(s) 1077
BseDI CCNNGG 1 cut(s) 642
BseGI GGATG 1 cut(s) 652
BseMI GCAATG 1 cut(s) 694
BseMII CTCAG 5 cut(s) 297, 326, 527, 735, 947
BseNI ACTGG 3 cut(s) 97, 1010, 1123
BseRI GAGGAG 3 cut(s) 113, 165, 631
BseYI CCCAGC 1 cut(s) 1224
BshFI GGCC 5 cut(s) 135, 272, 588, 885, 1036
BshVI ATCGAT 1 cut(s) 1077
BsiHKCI CYCGRG 3 cut(s) 58, 901, 1180
BslFI GGGAC 2 cut(s) 514, 1044
BsmAI GTCTC 4 cut(s) 163, 232, 315, 1116
BsmFI GGGAC 2 cut(s) 514, 1044
BsmI GAATGC 1 cut(s) 661
BsnI GGCC 5 cut(s) 135, 272, 588, 885, 1036
BsoBI CYCGRG 3 cut(s) 58, 901, 1180
Bsp1407I TGTACA 1 cut(s) 1140
Bsp143I GATC 9 cut(s) 106, 331, 561, 754, 810, 855, 891, 1074, 1152
Bsp1720I GCTNAGC 2 cut(s) 716, 721
BspACI CCGC 2 cut(s) 364, 514
BspANI GGCC 5 cut(s) 135, 272, 588, 885, 1036
BspCNI CTCAG 5 cut(s) 298, 325, 528, 734, 948
BspDI ATCGAT 1 cut(s) 1077
BspMI ACCTGC 1 cut(s) 1091
BspOI GCTAGC 1 cut(s) 353
BspPI GGATC 1 cut(s) 886
BsrDI GCAATG 1 cut(s) 694
BsrGI TGTACA 1 cut(s) 1140
BsrI ACTGG 3 cut(s) 97, 1010, 1123
BssECI CCNNGG 1 cut(s) 642
BssMI GATC 9 cut(s) 106, 331, 561, 754, 810, 855, 891, 1074, 1152
BssSI CACGAG 1 cut(s) 214
Bst2BI CACGAG 1 cut(s) 214
Bst4CI ACNGT 2 cut(s) 505, 851
Bst6I CTCTTC 1 cut(s) 131
BstAUI TGTACA 1 cut(s) 1140
BstBAI YACGTR 1 cut(s) 1114
BstC8I GCNNGC 3 cut(s) 351, 604, 908
BstDEI CTNAG 6 cut(s) 306, 312, 536, 716, 721, 956
BstEII GGTNACC 1 cut(s) 53
BstF5I GGATG 1 cut(s) 652
BstKTI GATC 9 cut(s) 109, 334, 564, 757, 813, 858, 894, 1077, 1155
BstMAI GTCTC 4 cut(s) 163, 232, 315, 1116
BstMBI GATC 9 cut(s) 106, 331, 561, 754, 810, 855, 891, 1074, 1152
BstMWI GCNNNNNNNGC 1 cut(s) 322
BstPI GGTNACC 1 cut(s) 53
BstSFI CTRYAG 2 cut(s) 546, 944
BstV2I GAAGAC 5 cut(s) 181, 758, 1036, 1114, 1170
BstX2I RGATCY 2 cut(s) 810, 891
BstYI RGATCY 2 cut(s) 810, 891
Bsu15I ATCGAT 1 cut(s) 1077
BsuI GTATCC 1 cut(s) 128
BsuRI GGCC 5 cut(s) 135, 272, 588, 885, 1036
BsuTUI ATCGAT 1 cut(s) 1077
BtsCI GGATG 1 cut(s) 652
BveI ACCTGC 1 cut(s) 1091
Cac8I GCNNGC 3 cut(s) 351, 604, 908
CaiI CAGNNNCTG 1 cut(s) 989
Cfr13I GGNCC 4 cut(s) 270, 587, 786, 980
ClaI ATCGAT 1 cut(s) 1077
Csp6I GTAC 2 cut(s) 532, 1141
CviQI GTAC 2 cut(s) 532, 1141
DdeI CTNAG 6 cut(s) 306, 312, 536, 716, 721, 956
DpnI GATC 9 cut(s) 108, 333, 563, 756, 812, 857, 893, 1076, 1154
DpnII GATC 9 cut(s) 106, 331, 561, 754, 810, 855, 891, 1074, 1152
EaeI YGGCCR 2 cut(s) 883, 1034
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
EciI GGCGGA 1 cut(s) 529
Eco32I GATATC 1 cut(s) 435
Eco47I GGWCC 2 cut(s) 786, 980
Eco72I CACGTG 1 cut(s) 1114
Eco88I CYCGRG 3 cut(s) 58, 901, 1180
Eco91I GGTNACC 1 cut(s) 53
EcoO109I RGGNCCY 1 cut(s) 786
EcoO65I GGTNACC 1 cut(s) 53
EcoRV GATATC 1 cut(s) 435
EcoT22I ATGCAT 1 cut(s) 919
FalI AAGNNNNNCTT 2 cut(s) 244, 276
FaqI GGGAC 2 cut(s) 514, 1044
FauNDI CATATG 1 cut(s) 817
FbaI TGATCA 2 cut(s) 561, 1152
FokI GGATG 1 cut(s) 659
FspBI CTAG 4 cut(s) 350, 486, 839, 998
GsaI CCCAGC 1 cut(s) 1228
GsuI CTGGAG 1 cut(s) 1140
HaeIII GGCC 5 cut(s) 135, 272, 588, 885, 1036
HincII GTYRAC 1 cut(s) 706
HindII GTYRAC 1 cut(s) 706
HindIII AAGCTT 2 cut(s) 323, 404
HinfI GANTC 6 cut(s) 223, 302, 308, 554, 899, 973
HphI GGTGA 2 cut(s) 65, 208
Hpy166II GTNNAC 2 cut(s) 706, 1141
Hpy188III TCNNGA 9 cut(s) 83, 285, 329, 654, 752, 983, 1023, 1069, 1180
Hpy8I GTNNAC 2 cut(s) 706, 1141
Hpy99I CGWCG 2 cut(s) 23, 622
HpyAV CCTTC 3 cut(s) 44, 267, 799
HpyCH4III ACNGT 2 cut(s) 505, 851
HpyCH4IV ACGT 2 cut(s) 21, 1113
HpyCH4V TGCA 5 cut(s) 626, 701, 874, 917, 1086
HpyF10VI GCNNNNNNNGC 1 cut(s) 322
HpyF3I CTNAG 6 cut(s) 306, 312, 536, 716, 721, 956
HpySE526I ACGT 2 cut(s) 21, 1113
Ksp22I TGATCA 2 cut(s) 561, 1152
Kzo9I GATC 9 cut(s) 106, 331, 561, 754, 810, 855, 891, 1074, 1152
LweI GCATC 2 cut(s) 532, 1095
MaeI CTAG 4 cut(s) 350, 486, 839, 998
MaeII ACGT 2 cut(s) 21, 1113
MaeIII GTNAC 7 cut(s) 53, 290, 385, 475, 672, 1000, 1114
MalI GATC 9 cut(s) 108, 333, 563, 756, 812, 857, 893, 1076, 1154
MboI GATC 9 cut(s) 106, 331, 561, 754, 810, 855, 891, 1074, 1152
MfeI CAATTG 1 cut(s) 76
MflI RGATCY 2 cut(s) 810, 891
MluCI AATT 3 cut(s) 6, 76, 1101
MlyI GAGTC 2 cut(s) 317, 893
Mph1103I ATGCAT 1 cut(s) 919
MseI TTAA 4 cut(s) 414, 429, 507, 932
MslI CAYNNNNRTG 1 cut(s) 666
MunI CAATTG 1 cut(s) 76
Mva1269I GAATGC 1 cut(s) 661
MwoI GCNNNNNNNGC 1 cut(s) 322
NdeI CATATG 1 cut(s) 817
NdeII GATC 9 cut(s) 106, 331, 561, 754, 810, 855, 891, 1074, 1152
NheI GCTAGC 1 cut(s) 349
NmeAIII GCCGAG 1 cut(s) 1073
NmuCI GTSAC 5 cut(s) 53, 385, 475, 1000, 1114
NsiI ATGCAT 1 cut(s) 919
PaeR7I CTCGAG 1 cut(s) 901
PctI GAATGC 1 cut(s) 661
PfeI GAWTC 4 cut(s) 223, 302, 554, 973
PleI GAGTC 2 cut(s) 316, 893
PmaCI CACGTG 1 cut(s) 1114
PmlI CACGTG 1 cut(s) 1114
PpsI GAGTC 2 cut(s) 316, 893
Ppu21I YACGTR 1 cut(s) 1114
PpuMI RGGWCCY 1 cut(s) 786
PsiI TTATAA 1 cut(s) 68
Psp5II RGGWCCY 1 cut(s) 786
PspCI CACGTG 1 cut(s) 1114
PspEI GGTNACC 1 cut(s) 53
PspFI CCCAGC 1 cut(s) 1224
PspPI GGNCC 4 cut(s) 270, 587, 786, 980
PspPPI RGGWCCY 1 cut(s) 786
PspXI VCTCGAGB 1 cut(s) 901
PstNI CAGNNNCTG 1 cut(s) 989
PsuI RGATCY 2 cut(s) 810, 891
RsaI GTAC 2 cut(s) 533, 1142
RsaNI GTAC 2 cut(s) 532, 1141
RseI CAYNNNNRTG 1 cut(s) 666
SaqAI TTAA 4 cut(s) 414, 429, 507, 932
Sau3AI GATC 9 cut(s) 106, 331, 561, 754, 810, 855, 891, 1074, 1152
Sau96I GGNCC 4 cut(s) 270, 587, 786, 980
SchI GAGTC 2 cut(s) 317, 893
SfaNI GCATC 2 cut(s) 532, 1095
SfcI CTRYAG 2 cut(s) 546, 944
Sfr274I CTCGAG 1 cut(s) 901
SinI GGWCC 2 cut(s) 786, 980
SlaI CTCGAG 1 cut(s) 901
SmiMI CAYNNNNRTG 1 cut(s) 666
SmlI CTYRAG 4 cut(s) 283, 407, 901, 1067
SmoI CTYRAG 4 cut(s) 283, 407, 901, 1067
Sse9I AATT 3 cut(s) 6, 76, 1101
SsiI CCGC 2 cut(s) 364, 514
SspMI CTAG 4 cut(s) 350, 486, 839, 998
TaaI ACNGT 2 cut(s) 505, 851
TaiI ACGT 2 cut(s) 24, 1116
TaqI TCGA 6 cut(s) 437, 665, 858, 902, 976, 1077
TasI AATT 3 cut(s) 6, 76, 1101
TatI WGTACW 1 cut(s) 1140
TfiI GAWTC 4 cut(s) 223, 302, 554, 973
Tru1I TTAA 4 cut(s) 414, 429, 507, 932
Tru9I TTAA 4 cut(s) 414, 429, 507, 932
TseFI GTSAC 5 cut(s) 53, 385, 475, 1000, 1114
Tsp45I GTSAC 5 cut(s) 53, 385, 475, 1000, 1114
TspDTI ATGAA 4 cut(s) 534, 728, 856, 986
VpaK11BI GGWCC 2 cut(s) 786, 980
XapI RAATTY 1 cut(s) 6
XcmI CCANNNNNNNNNTGG 1 cut(s) 216
XhoI CTCGAG 1 cut(s) 901
XspI CTAG 4 cut(s) 350, 486, 839, 998
Zsp2I ATGCAT 1 cut(s) 919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.