Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004386

Physical Location & Seq

Genomic Coordinates Reverse (-)

13487354 .. 13490132

Gene Structure 2779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g12840.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGGGATTTTGCACGAGGACGTTGTGGTAATTAACCAGGCGGAGAAGGCTGGGGAGCCCACTGTCATCACTGTGAATTGTCCTGACAAGACTGGGTTGGAATGTGATTTGTGCAGAGTTATATTTCTGTTTGGCCTCAGCATTTGCAGGGGAGATGTTTCAACAGATGGGAAATGGTGCTACATAGTGTTTTGGGTGGTGGGGAAACCAAGCACAAGGTGGAATTTGTTGACAAAGAGACTGTTGGCAGCGTGTCCATCGTATTTTTCGACTTCTAGAATATTCTATTACCGGCCCGAAAACCAGCAGCCTAAGCCACCGGATGTGTTCCTTTTGAAGTTCTGGTGTTCTTATGAACGGGACGGACTATTGCATGATGTCACTGAGGTTCTCTGTGAGCTGGAGCTCACTATAAACAGCGTGAAGGTATCGACTACCCCAGATGGGAGAGTAATGGACCTTTTCTTCATTACAGATACTAGAGAAATTCTTCATACAAAAAGAAGACAAGATGAAACGATTGATTCTCTGAAGGCTGTTTTATGCAATGCTTTGTTGAGTTGCGAAATTGAGTTGGCCGGATCAGAAGTTACAGCGTGTTCACAGGGTTCTCCGTATCTTCCTTCTGCTATTACCGAAGAAATATTCAGCTTAGAGCTGCCCAACGGACGCCTAAGCAGATCTGTTGCCTCCAACCCCGTTTCAGTAACCGTGGACAATCACCTTAGCCCATCTCACACGCTTGTTCAAATCTTCTGCCAAGATCATAAAGGTCTCATATATGACATCATGAGAACCCTGAAGGATTACAATATTCAGGTTCGTTATGGACGATTCTGTGCTAACCCAGGAGGAAATTGTGAGTTAGACTTGTTCATAATGCAAGCAGATGGGAAGAAGATTGTTGACCCAAACAAGCAAAATGCATTATCTTCCCGCTTGAGAATGGAGCTTCTGCATCCTCTTAGAGTGGCTGTGGTGAGCCGTGGTCCTGACACTGAGCTGCTGGTTGCTAACCCCGTTGAGTTGTCTGGCAGGGGCCGTCCTCTTGTCTTTTATGATATCACACTCGCCCTCAAAGTTCTAAAAACACGCATATTTTCTGTTAAGATAGGCAGACACATGATCCGGGATCGAGAGTGGGAAGTGTACAGAATCCTGCTAGATGAAGGAGTTGGTTCTCCAGTGCCAAGGAACAAAATTGAGGAAGGTGTAAGAAACAAGTTGATGGGATGGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

414

Amino Acids

46.66

Weight (kDa)

6.48

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36840
fragaria_vesca	FvH4_6g16600 FvH4_6g16600 FvH4_7g18540
malus_domestica	MD01G1101800.v1.1 MD04G1090700.v1.1 MD12G1108700.v1.1
prunus_persica	Prupe.2G207000_v2.0.a1 Prupe.7G127300_v2.0.a1
pyrus_communis	pycom01g12840 pycom04g08590 pycom12g10900
rosa_chinensis	RchiOBHm_Chr1g0362321 RchiOBHm_Chr2g0171731 RchiOBHm_Chr3g0470541
rosa_laevigata	RLG00000024260 RLG00000027651
rosa_multiflora	Rmu_sc0002115.1_g000012 Rmu_sc0020251.1_g000001
rosa_roxburghii	Rroxscaffold_4G00294250 Rroxscaffold_6G00410740
rosa_rugosa	Rorug01G0297600 Rorug01G0297700 Rorug03G0109900
rosa_samantha	Rh1AG306300 Rh1DG300000 Rh3AG160000 Rh3BG184600 Rh3CG175100 Rh3DG190100
rosa_wichuraiana	Rw1G027190 Rw3G015140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	41, 937
AclWI	GGATC	3 cut(s)	589, 1120, 1140
AcoI	YGGCCR	1 cut(s)	576
AcsI	RAATTY	2 cut(s)	223, 486
AcuI	CTGAAG	2 cut(s)	551, 821
AcyI	GRCGYC	1 cut(s)	670
AdeI	CACNNNGTG	1 cut(s)	219
AfaI	GTAC	1 cut(s)	1151
AfiI	CCNNNNNNNGG	1 cut(s)	444
AgsI	TTSAA	3 cut(s)	162, 337, 749
AjnI	CCWGG	2 cut(s)	36, 847
AluBI	AGCT	6 cut(s)	400, 406, 651, 658, 952, 1003
AluI	AGCT	6 cut(s)	400, 406, 651, 658, 952, 1003
Alw21I	GWGCWC	1 cut(s)	408
Alw26I	GTCTC	2 cut(s)	232, 779
AlwI	GGATC	3 cut(s)	589, 1120, 1140
AoxI	GGCC	4 cut(s)	133, 293, 576, 1039
ApeKI	GCWGC	4 cut(s)	248, 307, 658, 1003
ApoI	RAATTY	2 cut(s)	223, 486
Asp700I	GAANNNNTTC	1 cut(s)	489
AspS9I	GGNCC	4 cut(s)	294, 457, 989, 1039
AsuC2I	CCSGG	1 cut(s)	1130
AsuHPI	GGTGA	2 cut(s)	713, 991
AvaII	GGWCC	2 cut(s)	457, 989
BanII	GRGCYC	2 cut(s)	60, 408
BauI	CACGAG	1 cut(s)	14
BbsI	GAAGAC	1 cut(s)	511
Bbv12I	GWGCWC	1 cut(s)	408
BbvCI	CCTCAGC	1 cut(s)	137
BbvI	GCAGC	4 cut(s)	260, 319, 645, 990
BccI	CCATC	7 cut(s)	161, 265, 437, 739, 884, 1222, 1227
BceAI	ACGGC	2 cut(s)	969, 1026
BciT130I	CCWGG	2 cut(s)	38, 849
BcnI	CCSGG	1 cut(s)	1130
BcoDI	GTCTC	2 cut(s)	232, 779
BfaI	CTAG	3 cut(s)	276, 480, 1163
BglII	AGATCT	1 cut(s)	680
BisI	GCNGC	4 cut(s)	249, 308, 659, 1004
BlsI	GCNGC	4 cut(s)	250, 309, 660, 1005
Bme1390I	CCNGG	3 cut(s)	38, 849, 1130
Bme18I	GGWCC	2 cut(s)	457, 989
BmgT120I	GGNCC	4 cut(s)	294, 457, 989, 1039
BmiI	GGNNCC	2 cut(s)	57, 1040
BmrFI	CCNGG	3 cut(s)	38, 849, 1130
BmrI	ACTGGG	1 cut(s)	102
BmsI	GCATC	1 cut(s)	967
BmuI	ACTGGG	1 cut(s)	102
BpiI	GAAGAC	1 cut(s)	511
BpmI	CTGGAG	2 cut(s)	422, 1167
Bpu10I	CCTNAGC	4 cut(s)	137, 312, 674, 725
BpuEI	CTTGAG	1 cut(s)	961
BpuMI	CCSGG	1 cut(s)	1130
BsaHI	GRCGYC	1 cut(s)	670
BsaI	GGTCTC	1 cut(s)	779
BsaJI	CCNNGG	4 cut(s)	711, 847, 985, 1190
BsaWI	WCCGGW	1 cut(s)	319
Bsc4I	CCNNNNNNNGG	1 cut(s)	444
Bse118I	RCCGGY	1 cut(s)	291
Bse1I	ACTGG	2 cut(s)	97, 1184
Bse3DI	GCAATG	1 cut(s)	553
BseBI	CCWGG	2 cut(s)	38, 849
BseDI	CCNNGG	4 cut(s)	711, 847, 985, 1190
BseGI	GGATG	3 cut(s)	328, 958, 1238
BseLI	CCNNNNNNNGG	1 cut(s)	444
BseMI	GCAATG	1 cut(s)	553
BseMII	CTCAG	3 cut(s)	151, 375, 990
BseNI	ACTGG	2 cut(s)	97, 1184
BseXI	GCAGC	4 cut(s)	260, 319, 645, 990
BseYI	CCCAGC	1 cut(s)	50
BsgI	GTGCAG	1 cut(s)	133
BshFI	GGCC	4 cut(s)	135, 295, 578, 1041
BsiHKAI	GWGCWC	1 cut(s)	408
BsiSI	CCGG	4 cut(s)	292, 320, 579, 1129
BslFI	GGGAC	1 cut(s)	374
BslI	CCNNNNNNNGG	1 cut(s)	444
BsmAI	GTCTC	2 cut(s)	232, 779
BsmFI	GGGAC	1 cut(s)	374
BsnI	GGCC	4 cut(s)	135, 295, 578, 1041
Bso31I	GGTCTC	1 cut(s)	779
Bsp1286I	GDGCHC	2 cut(s)	60, 408
Bsp1407I	TGTACA	1 cut(s)	1149
Bsp143I	GATC	5 cut(s)	581, 680, 763, 1125, 1132
BspACI	CCGC	2 cut(s)	41, 937
BspANI	GGCC	4 cut(s)	135, 295, 578, 1041
BspCNI	CTCAG	3 cut(s)	150, 376, 991
BspHI	TCATGA	1 cut(s)	789
BspLI	GGNNCC	2 cut(s)	57, 1040
BspPI	GGATC	3 cut(s)	589, 1120, 1140
BspTNI	GGTCTC	1 cut(s)	779
BsrDI	GCAATG	1 cut(s)	553
BsrFI	RCCGGY	1 cut(s)	291
BsrGI	TGTACA	1 cut(s)	1149
BsrI	ACTGG	2 cut(s)	97, 1184
BssAI	RCCGGY	1 cut(s)	291
BssECI	CCNNGG	4 cut(s)	711, 847, 985, 1190
BssMI	GATC	5 cut(s)	581, 680, 763, 1125, 1132
BssNI	GRCGYC	1 cut(s)	670
BssSI	CACGAG	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	1190
Bst2BI	CACGAG	1 cut(s)	14
Bst2UI	CCWGG	2 cut(s)	38, 849
Bst4CI	ACNGT	4 cut(s)	64, 73, 243, 712
BstACI	GRCGYC	1 cut(s)	670
BstAUI	TGTACA	1 cut(s)	1149
BstC8I	GCNNGC	1 cut(s)	885
BstDEI	CTNAG	8 cut(s)	137, 312, 384, 652, 674, 725, 965, 999
BstDSI	CCRYGG	2 cut(s)	711, 985
BstF5I	GGATG	3 cut(s)	328, 958, 1238
BstKTI	GATC	5 cut(s)	584, 683, 766, 1128, 1135
BstMAI	GTCTC	2 cut(s)	232, 779
BstMBI	GATC	5 cut(s)	581, 680, 763, 1125, 1132
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 313
BstNI	CCWGG	2 cut(s)	38, 849
BstSCI	CCNGG	3 cut(s)	36, 847, 1128
BstV1I	GCAGC	4 cut(s)	260, 319, 645, 990
BstV2I	GAAGAC	1 cut(s)	511
BstX2I	RGATCY	1 cut(s)	680
BstYI	RGATCY	1 cut(s)	680
BsuRI	GGCC	4 cut(s)	135, 295, 578, 1041
BtgI	CCRYGG	2 cut(s)	711, 985
BtsCI	GGATG	3 cut(s)	328, 958, 1238
BtsIMutI	CAGTG	5 cut(s)	60, 69, 381, 996, 1191
Cac8I	GCNNGC	1 cut(s)	885
CciI	TCATGA	1 cut(s)	789
Cfr10I	RCCGGY	1 cut(s)	291
Cfr13I	GGNCC	4 cut(s)	294, 457, 989, 1039
CseI	GACGC	1 cut(s)	678
Csp6I	GTAC	1 cut(s)	1150
CviAII	CATG	3 cut(s)	374, 790, 1123
CviQI	GTAC	1 cut(s)	1150
DdeI	CTNAG	8 cut(s)	137, 312, 384, 652, 674, 725, 965, 999
DpnI	GATC	5 cut(s)	583, 682, 765, 1127, 1134
DpnII	GATC	5 cut(s)	581, 680, 763, 1125, 1132
DraIII	CACNNNGTG	1 cut(s)	219
EaeI	YGGCCR	1 cut(s)	576
EciI	GGCGGA	1 cut(s)	56
Ecl136II	GAGCTC	1 cut(s)	406
Eco130I	CCWWGG	1 cut(s)	1190
Eco24I	GRGCYC	2 cut(s)	60, 408
Eco31I	GGTCTC	1 cut(s)	779
Eco32I	GATATC	1 cut(s)	1063
Eco47I	GGWCC	2 cut(s)	457, 989
Eco53kI	GAGCTC	1 cut(s)	406
Eco57I	CTGAAG	2 cut(s)	551, 821
EcoICRI	GAGCTC	1 cut(s)	406
EcoRII	CCWGG	2 cut(s)	36, 847
EcoRV	GATATC	1 cut(s)	1063
EcoT14I	CCWWGG	1 cut(s)	1190
EcoT22I	ATGCAT	1 cut(s)	928
EcoT38I	GRGCYC	2 cut(s)	60, 408
ErhI	CCWWGG	1 cut(s)	1190
FaeI	CATG	3 cut(s)	377, 793, 1126
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	3 cut(s)	373, 789, 1122
FauI	CCCGC	1 cut(s)	944
Fnu4HI	GCNGC	4 cut(s)	249, 308, 659, 1004
FokI	GGATG	2 cut(s)	335, 945
FriOI	GRGCYC	2 cut(s)	60, 408
Fsp4HI	GCNGC	4 cut(s)	249, 308, 659, 1004
FspBI	CTAG	3 cut(s)	276, 480, 1163
GluI	GCNGC	4 cut(s)	249, 308, 659, 1004
GsaI	CCCAGC	1 cut(s)	54
GsuI	CTGGAG	2 cut(s)	422, 1167
HaeIII	GGCC	4 cut(s)	135, 295, 578, 1041
HapII	CCGG	4 cut(s)	292, 320, 579, 1129
HgaI	GACGC	1 cut(s)	678
Hin1I	GRCGYC	1 cut(s)	670
Hin1II	CATG	3 cut(s)	377, 793, 1126
HincII	GTYRAC	2 cut(s)	231, 907
HindII	GTYRAC	2 cut(s)	231, 907
HinfI	GANTC	3 cut(s)	524, 834, 1155
HpaII	CCGG	4 cut(s)	292, 320, 579, 1129
HphI	GGTGA	2 cut(s)	713, 991
Hpy166II	GTNNAC	5 cut(s)	231, 602, 715, 907, 1150
Hpy188I	TCNGA	2 cut(s)	531, 586
Hpy188III	TCNNGA	5 cut(s)	83, 276, 790, 992, 1136
Hpy8I	GTNNAC	5 cut(s)	231, 602, 715, 907, 1150
HpyAV	CCTTC	7 cut(s)	40, 418, 526, 633, 796, 1163, 1202
HpyCH4III	ACNGT	4 cut(s)	64, 73, 243, 712
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	8 cut(s)	13, 114, 147, 373, 546, 883, 926, 958
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 313
HpyF3I	CTNAG	8 cut(s)	137, 312, 384, 652, 674, 725, 965, 999
HpySE526I	ACGT	1 cut(s)	21
Hsp92I	GRCGYC	1 cut(s)	670
Hsp92II	CATG	3 cut(s)	377, 793, 1126
Kzo9I	GATC	5 cut(s)	581, 680, 763, 1125, 1132
LmnI	GCTCC	3 cut(s)	55, 403, 949
Lsp1109I	GCAGC	4 cut(s)	260, 319, 645, 990
LweI	GCATC	1 cut(s)	967
MaeI	CTAG	3 cut(s)	276, 480, 1163
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	3 cut(s)	379, 589, 706
MalI	GATC	5 cut(s)	583, 682, 765, 1127, 1134
MboI	GATC	5 cut(s)	581, 680, 763, 1125, 1132
MboII	GAAGA	9 cut(s)	457, 482, 516, 611, 650, 745, 907, 910, 924
MflI	RGATCY	1 cut(s)	680
MhlI	GDGCHC	2 cut(s)	60, 408
MluCI	AATT	7 cut(s)	30, 76, 223, 486, 567, 856, 1200
MmeI	TCCRAC	2 cut(s)	78, 717
MnlI	CCTC	9 cut(s)	10, 146, 379, 700, 845, 972, 1056, 1085, 1198
Mph1103I	ATGCAT	1 cut(s)	928
MroXI	GAANNNNTTC	1 cut(s)	489
MseI	TTAA	2 cut(s)	33, 1107
MslI	CAYNNNNRTG	1 cut(s)	71
MspI	CCGG	4 cut(s)	292, 320, 579, 1129
MspR9I	CCNGG	3 cut(s)	38, 849, 1130
MvaI	CCWGG	2 cut(s)	38, 849
MwoI	GCNNNNNNNGC	2 cut(s)	47, 313
NciI	CCSGG	1 cut(s)	1130
NdeII	GATC	5 cut(s)	581, 680, 763, 1125, 1132
NlaIII	CATG	3 cut(s)	377, 793, 1126
NlaIV	GGNNCC	2 cut(s)	57, 1040
NmuCI	GTSAC	1 cut(s)	379
NsiI	ATGCAT	1 cut(s)	928
PagI	TCATGA	1 cut(s)	789
PcsI	WCGNNNNNNNCGW	2 cut(s)	266, 829
PdmI	GAANNNNTTC	1 cut(s)	489
PfeI	GAWTC	3 cut(s)	524, 834, 1155
PfoI	TCCNGGA	1 cut(s)	1128
PkrI	GCNGC	4 cut(s)	250, 309, 660, 1005
Psp124BI	GAGCTC	1 cut(s)	408
Psp6I	CCWGG	2 cut(s)	36, 847
PspFI	CCCAGC	1 cut(s)	50
PspGI	CCWGG	2 cut(s)	36, 847
PspN4I	GGNNCC	2 cut(s)	57, 1040
PspPI	GGNCC	4 cut(s)	294, 457, 989, 1039
PsuI	RGATCY	1 cut(s)	680
RsaI	GTAC	1 cut(s)	1151
RsaNI	GTAC	1 cut(s)	1150
RseI	CAYNNNNRTG	1 cut(s)	71
SacI	GAGCTC	1 cut(s)	408
SaqAI	TTAA	2 cut(s)	33, 1107
SatI	GCNGC	4 cut(s)	249, 308, 659, 1004
Sau3AI	GATC	5 cut(s)	581, 680, 763, 1125, 1132
Sau96I	GGNCC	4 cut(s)	294, 457, 989, 1039
ScrFI	CCNGG	3 cut(s)	38, 849, 1130
SduI	GDGCHC	2 cut(s)	60, 408
SfaNI	GCATC	1 cut(s)	967
SinI	GGWCC	2 cut(s)	457, 989
SmiMI	CAYNNNNRTG	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	940
SmoI	CTYRAG	1 cut(s)	940
Sse9I	AATT	7 cut(s)	30, 76, 223, 486, 567, 856, 1200
SsiI	CCGC	2 cut(s)	41, 937
SspI	AATATT	3 cut(s)	282, 645, 814
SspMI	CTAG	3 cut(s)	276, 480, 1163
SstI	GAGCTC	1 cut(s)	408
StyD4I	CCNGG	3 cut(s)	36, 847, 1128
StyI	CCWWGG	1 cut(s)	1190
TaaI	ACNGT	4 cut(s)	64, 73, 243, 712
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	3 cut(s)	269, 431, 1135
TasI	AATT	7 cut(s)	30, 76, 223, 486, 567, 856, 1200
TatI	WGTACW	1 cut(s)	1149
TfiI	GAWTC	3 cut(s)	524, 834, 1155
Tru1I	TTAA	2 cut(s)	33, 1107
Tru9I	TTAA	2 cut(s)	33, 1107
TscAI	CASTG	5 cut(s)	67, 76, 388, 1003, 1191
TseFI	GTSAC	1 cut(s)	379
TseI	GCWGC	4 cut(s)	248, 307, 658, 1003
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	6 cut(s)	369, 457, 482, 528, 865, 1182
TspGWI	ACGGA	3 cut(s)	378, 603, 681
TspRI	CASTG	5 cut(s)	67, 76, 388, 1003, 1191
VpaK11BI	GGWCC	2 cut(s)	457, 989
XapI	RAATTY	2 cut(s)	223, 486
XbaI	TCTAGA	1 cut(s)	275
XcmI	CCANNNNNNNNNTGG	1 cut(s)	216
XmnI	GAANNNNTTC	1 cut(s)	489
XspI	CTAG	3 cut(s)	276, 480, 1163
Zsp2I	ATGCAT	1 cut(s)	928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.