Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004386

Physical Location & Seq

Genomic Coordinates Reverse (-)

15453100 .. 15457143

Gene Structure 4044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g18540.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGGCATTTTGCATGAGGACGTGGTAGTGATTAGCCAGGGAGAGAAGGCTGGAGATCCCACTGTGGTCACTGTGAATTGCCCCGACAAAACTGGGTTAGGCTGTGATCTGTGCAGGGTCATATTGTTGTTTGGGCTGAGCATTTGCAGAGGAGATGTTTCGACCGACGGAAAATGGTGCTACATAGTGTTTTGGGTGGTGGGAAAGCCGGAGACTAGGTGGAATTTGCTGACAAAGAGATTGTTAGAAGTGTGTCCATCATACTTTACCACTTCTGGGATATACTATTATCGGCCGGAGAATCAGCAGCCGAAGCCACTAGATGTGTTCCTTTTGAAATTCTGGTGCTCTTATGAACAGGAAGGCCTATTGCATGATGTCACTAAGGTTCTTTGTGAGCTTGAACTCACAATAGAGAGAGTGAAGGTGTCTACTACCCCAGATGGGAAAGTGATGGACCTTTTTTTTGTTACAGATACCAGAGAACTGCTGCATACAAAAAGACGGCAAGATGAAACAATTCATTGCCTGAAAGCTGTCTTGGGGAATGTCTTATTGGGTTGTGAAATTGAATTGGCCGAGTCAAAAGTTACTGCATGTTCACAGGGTTCTCATTATCTTCCTTCTGAAATCACTGAAGAAATGTTAAGTTTGGAGTGGACCAACGGCCACCTAAAAAGACCTTTTGCCTCCATTCCCATTTCGATAACAGTGGACAATAACCTCAGCCCATCTCACACACTAGTTCAAATATTCTGTCCAGATCATAAAGGTCTAGTGTATGACATCATGAGAACACTAAAGGATTGCAACCTTCAGGTTTCTTATGGACGATTCTATGAGAACACAAAAGGGAATTGTGAGCTGGACTTGTTTGTAGTGCAACCAGATGGCAAGAAGATTGTTGACAGCAAGAAGCAAGATGCCTTGTGTTCTCGCTTGAGAGCGGAGCTTTTGTGTCCGCTTCGTGTGGCTGTGGTGAACCGCGGCCCTGACACCGAGCTGTTGGTAGCAAACCCGGTTGAGTTGTCCGGCAGGGGCCGGCCTCTTGTCTTTTATGACATTACTCTTGCCCTCAAAGATCTGAGCACACGCATCTTCTCGGCTGAGATAGTGAGACACATGATCCGAGATCGGGAGTGGGAGGTCTACAGATTCCTGCTAGATGAAGGATTCTGTCCTTCGGTGCCAAGGAACAAAATCGAGGAAGGTGTAAGAAATATACTGATGGGTTGGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

414

Amino Acids

46.95

Weight (kDa)

5.71

Isoelectric Point (pI)

37.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACR10_N	PF24914	11 - 86	2.1e-39	ACT domain-containing protein ACR10, N-terminal
ACT_ACR9_3rd	PF24931	235 - 332	1.3e-48	ACR9-like, ACT-like domain
ACT_ACR9_C	PF24926	333 - 411	1.2e-37	ACT domain-containing protein ACR9, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36840
fragaria_vesca	FvH4_6g16600 FvH4_6g16600 FvH4_7g18540
malus_domestica	MD01G1101800.v1.1 MD04G1090700.v1.1 MD12G1108700.v1.1
prunus_persica	Prupe.2G207000_v2.0.a1 Prupe.7G127300_v2.0.a1
pyrus_communis	pycom01g12840 pycom04g08590 pycom12g10900
rosa_chinensis	RchiOBHm_Chr1g0362321 RchiOBHm_Chr2g0171731 RchiOBHm_Chr3g0470541
rosa_laevigata	RLG00000024260 RLG00000027651
rosa_multiflora	Rmu_sc0002115.1_g000012 Rmu_sc0020251.1_g000001
rosa_roxburghii	Rroxscaffold_4G00294250 Rroxscaffold_6G00410740
rosa_rugosa	Rorug01G0297600 Rorug01G0297700 Rorug03G0109900
rosa_samantha	Rh1AG306300 Rh1DG300000 Rh3AG160000 Rh3BG184600 Rh3CG175100 Rh3DG190100
rosa_wichuraiana	Rw1G027190 Rw3G015140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1186
AccBSI	CCGCTC	1 cut(s)	947
AccI	GTMKAC	2 cut(s)	431, 1149
AccII	CGCG	1 cut(s)	987
AciI	CCGC	4 cut(s)	947, 962, 985, 987
AclWI	GGATC	2 cut(s)	50, 1120
AcoI	YGGCCR	3 cut(s)	293, 576, 667
AcsI	RAATTY	2 cut(s)	223, 338
AcuI	CTGAAG	2 cut(s)	657, 800
AfiI	CCNNNNNNNGG	3 cut(s)	276, 444, 1135
AgsI	TTSAA	4 cut(s)	337, 404, 572, 749
AhlI	ACTAGT	1 cut(s)	742
AjiI	CACGTC	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	36
AjuI	GAANNNNNNNTTGG	4 cut(s)	524, 539, 556, 571
AluBI	AGCT	5 cut(s)	400, 536, 865, 952, 1003
AluI	AGCT	5 cut(s)	400, 536, 865, 952, 1003
Alw21I	GWGCWC	2 cut(s)	350, 1091
Alw26I	GTCTC	2 cut(s)	206, 1111
AlwI	GGATC	2 cut(s)	50, 1120
AoxI	GGCC	7 cut(s)	293, 364, 576, 667, 988, 1039, 1043
ApeKI	GCWGC	2 cut(s)	307, 490
ApoI	RAATTY	2 cut(s)	223, 338
ArsI	GACNNNNNNTTYG	4 cut(s)	449, 481, 742, 774
Asp700I	GAANNNNTTC	1 cut(s)	519
AspS9I	GGNCC	4 cut(s)	457, 660, 989, 1039
AsuC2I	CCSGG	1 cut(s)	1019
AsuHPI	GGTGA	1 cut(s)	991
AvaII	GGWCC	2 cut(s)	457, 660
BanI	GGYRCC	1 cut(s)	1186
Bbv12I	GWGCWC	2 cut(s)	350, 1091
BbvCI	CCTCAGC	1 cut(s)	725
BbvI	GCAGC	2 cut(s)	319, 477
BccI	CCATC	6 cut(s)	265, 437, 448, 739, 884, 1222
BceAI	ACGGC	2 cut(s)	521, 682
BciT130I	CCWGG	1 cut(s)	38
BcnI	CCSGG	1 cut(s)	1019
BcoDI	GTCTC	2 cut(s)	206, 1111
BcuI	ACTAGT	1 cut(s)	742
BfaI	CTAG	5 cut(s)	216, 320, 743, 776, 1163
BfmI	CTRYAG	1 cut(s)	1150
BglII	AGATCT	1 cut(s)	1081
BisI	GCNGC	3 cut(s)	308, 491, 988
BlpI	GCTNAGC	1 cut(s)	137
BlsI	GCNGC	3 cut(s)	309, 492, 989
Bme1390I	CCNGG	2 cut(s)	38, 1019
Bme18I	GGWCC	2 cut(s)	457, 660
BmgBI	CACGTC	1 cut(s)	22
BmgT120I	GGNCC	4 cut(s)	457, 660, 989, 1039
BmiI	GGNNCC	2 cut(s)	1040, 1188
BmrFI	CCNGG	2 cut(s)	38, 1019
BmrI	ACTGGG	1 cut(s)	102
BmsI	GCATC	2 cut(s)	913, 1104
BmuI	ACTGGG	1 cut(s)	102
BpmI	CTGGAG	1 cut(s)	72
Bpu10I	CCTNAGC	1 cut(s)	725
Bpu1102I	GCTNAGC	1 cut(s)	137
BpuEI	CTTGAG	1 cut(s)	961
BpuMI	CCSGG	1 cut(s)	1019
BsaJI	CCNNGG	3 cut(s)	37, 985, 1190
BsaXI	ACNNNNNCTCC	4 cut(s)	203, 233, 941, 971
Bsc4I	CCNNNNNNNGG	3 cut(s)	276, 444, 1135
Bse118I	RCCGGY	1 cut(s)	1041
Bse1I	ACTGG	1 cut(s)	97
Bse3DI	GCAATG	1 cut(s)	523
BseBI	CCWGG	1 cut(s)	38
BseDI	CCNNGG	3 cut(s)	37, 985, 1190
BseLI	CCNNNNNNNGG	3 cut(s)	276, 444, 1135
BseMI	GCAATG	1 cut(s)	523
BseMII	CTCAG	4 cut(s)	128, 739, 1076, 1098
BseNI	ACTGG	1 cut(s)	97
BseRI	GAGGAG	1 cut(s)	165
BseX3I	CGGCCG	1 cut(s)	293
BseXI	GCAGC	2 cut(s)	319, 477
BsgI	GTGCAG	1 cut(s)	133
Bsh1236I	CGCG	1 cut(s)	987
Bsh1285I	CGRYCG	2 cut(s)	165, 296
BshFI	GGCC	7 cut(s)	295, 366, 578, 669, 990, 1041, 1045
BshNI	GGYRCC	1 cut(s)	1186
BsiEI	CGRYCG	2 cut(s)	165, 296
BsiHKAI	GWGCWC	2 cut(s)	350, 1091
BsiSI	CCGG	5 cut(s)	209, 296, 1019, 1032, 1042
BslI	CCNNNNNNNGG	3 cut(s)	276, 444, 1135
BsmAI	GTCTC	2 cut(s)	206, 1111
BsnI	GGCC	7 cut(s)	295, 366, 578, 669, 990, 1041, 1045
Bsp1286I	GDGCHC	2 cut(s)	350, 1091
Bsp143I	GATC	6 cut(s)	55, 106, 763, 1081, 1125, 1132
Bsp1720I	GCTNAGC	1 cut(s)	137
BspACI	CCGC	4 cut(s)	947, 962, 985, 987
BspANI	GGCC	7 cut(s)	295, 366, 578, 669, 990, 1041, 1045
BspCNI	CTCAG	4 cut(s)	129, 738, 1077, 1099
BspFNI	CGCG	1 cut(s)	987
BspHI	TCATGA	1 cut(s)	789
BspLI	GGNNCC	2 cut(s)	1040, 1188
BspPI	GGATC	2 cut(s)	50, 1120
BspT107I	GGYRCC	1 cut(s)	1186
BsrBI	CCGCTC	1 cut(s)	947
BsrDI	GCAATG	1 cut(s)	523
BsrFI	RCCGGY	1 cut(s)	1041
BsrI	ACTGG	1 cut(s)	97
BssAI	RCCGGY	1 cut(s)	1041
BssECI	CCNNGG	3 cut(s)	37, 985, 1190
BssMI	GATC	6 cut(s)	55, 106, 763, 1081, 1125, 1132
BssT1I	CCWWGG	1 cut(s)	1190
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	3 cut(s)	64, 73, 712
BstC8I	GCNNGC	1 cut(s)	1043
BstDEI	CTNAG	5 cut(s)	137, 384, 725, 1085, 1107
BstDSI	CCRYGG	1 cut(s)	985
BstFNI	CGCG	1 cut(s)	987
BstKTI	GATC	6 cut(s)	58, 109, 766, 1084, 1128, 1135
BstMAI	GTCTC	2 cut(s)	206, 1111
BstMBI	GATC	6 cut(s)	55, 106, 763, 1081, 1125, 1132
BstMCI	CGRYCG	2 cut(s)	165, 296
BstMWI	GCNNNNNNNGC	1 cut(s)	313
BstNI	CCWGG	1 cut(s)	38
BstNSI	RCATGY	1 cut(s)	600
BstSCI	CCNGG	2 cut(s)	36, 1017
BstSFI	CTRYAG	1 cut(s)	1150
BstUI	CGCG	1 cut(s)	987
BstV1I	GCAGC	2 cut(s)	319, 477
BstX2I	RGATCY	2 cut(s)	55, 1081
BstYI	RGATCY	2 cut(s)	55, 1081
BstZI	CGGCCG	1 cut(s)	293
BsuRI	GGCC	7 cut(s)	295, 366, 578, 669, 990, 1041, 1045
BtgI	CCRYGG	1 cut(s)	985
BtrI	CACGTC	1 cut(s)	22
BtsIMutI	CAGTG	4 cut(s)	60, 69, 633, 717
Cac8I	GCNNGC	1 cut(s)	1043
CciI	TCATGA	1 cut(s)	789
Cfr10I	RCCGGY	1 cut(s)	1041
Cfr13I	GGNCC	4 cut(s)	457, 660, 989, 1039
Cfr42I	CCGCGG	1 cut(s)	988
CviAII	CATG	5 cut(s)	14, 374, 597, 790, 1123
DdeI	CTNAG	5 cut(s)	137, 384, 725, 1085, 1107
DpnI	GATC	6 cut(s)	57, 108, 765, 1083, 1127, 1134
DpnII	GATC	6 cut(s)	55, 106, 763, 1081, 1125, 1132
EaeI	YGGCCR	3 cut(s)	293, 576, 667
EagI	CGGCCG	1 cut(s)	293
EclXI	CGGCCG	1 cut(s)	293
Eco130I	CCWWGG	1 cut(s)	1190
Eco147I	AGGCCT	1 cut(s)	366
Eco47I	GGWCC	2 cut(s)	457, 660
Eco52I	CGGCCG	1 cut(s)	293
Eco57I	CTGAAG	2 cut(s)	657, 800
EcoRII	CCWGG	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	1190
ErhI	CCWWGG	1 cut(s)	1190
FaeI	CATG	5 cut(s)	17, 377, 600, 793, 1126
FatI	CATG	5 cut(s)	13, 373, 596, 789, 1122
FblI	GTMKAC	2 cut(s)	431, 1149
Fnu4HI	GCNGC	3 cut(s)	308, 491, 988
FseI	GGCCGGCC	1 cut(s)	1045
Fsp4HI	GCNGC	3 cut(s)	308, 491, 988
FspBI	CTAG	5 cut(s)	216, 320, 743, 776, 1163
GluI	GCNGC	3 cut(s)	308, 491, 988
GsuI	CTGGAG	1 cut(s)	72
HaeIII	GGCC	7 cut(s)	295, 366, 578, 669, 990, 1041, 1045
HapII	CCGG	5 cut(s)	209, 296, 1019, 1032, 1042
Hin1II	CATG	5 cut(s)	17, 377, 600, 793, 1126
HincII	GTYRAC	1 cut(s)	907
HindII	GTYRAC	1 cut(s)	907
HinfI	GANTC	5 cut(s)	301, 581, 834, 1155, 1173
HpaII	CCGG	5 cut(s)	209, 296, 1019, 1032, 1042
HphI	GGTGA	1 cut(s)	991
Hpy166II	GTNNAC	7 cut(s)	432, 602, 660, 715, 907, 982, 1150
Hpy188I	TCNGA	3 cut(s)	628, 1086, 1130
Hpy188III	TCNNGA	3 cut(s)	761, 790, 1136
Hpy8I	GTNNAC	7 cut(s)	432, 602, 660, 715, 907, 982, 1150
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	8 cut(s)	40, 356, 418, 633, 824, 1163, 1191, 1202
HpyCH4III	ACNGT	3 cut(s)	64, 73, 712
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	8 cut(s)	13, 114, 147, 373, 493, 596, 810, 883
HpyF10VI	GCNNNNNNNGC	1 cut(s)	313
HpyF3I	CTNAG	5 cut(s)	137, 384, 725, 1085, 1107
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	5 cut(s)	17, 377, 600, 793, 1126
KroI	GCCGGC	1 cut(s)	1041
KroNI	GCCGGC	1 cut(s)	1043
KspI	CCGCGG	1 cut(s)	988
Kzo9I	GATC	6 cut(s)	55, 106, 763, 1081, 1125, 1132
LmnI	GCTCC	1 cut(s)	949
Lsp1109I	GCAGC	2 cut(s)	319, 477
LweI	GCATC	2 cut(s)	913, 1104
MaeI	CTAG	5 cut(s)	216, 320, 743, 776, 1163
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	4 cut(s)	67, 379, 469, 589
MalI	GATC	6 cut(s)	57, 108, 765, 1083, 1127, 1134
MbiI	CCGCTC	1 cut(s)	947
MboI	GATC	6 cut(s)	55, 106, 763, 1081, 1125, 1132
MboII	GAAGA	4 cut(s)	611, 650, 910, 1090
MflI	RGATCY	2 cut(s)	55, 1081
MhlI	GDGCHC	2 cut(s)	350, 1091
MluCI	AATT	7 cut(s)	76, 223, 338, 519, 567, 572, 856
MlyI	GAGTC	1 cut(s)	590
MnlI	CCTC	8 cut(s)	10, 143, 700, 734, 1056, 1085, 1138, 1198
MroNI	GCCGGC	1 cut(s)	1041
MroXI	GAANNNNTTC	1 cut(s)	519
MseI	TTAA	1 cut(s)	647
MspA1I	CMGCKG	1 cut(s)	987
MspI	CCGG	5 cut(s)	209, 296, 1019, 1032, 1042
MspR9I	CCNGG	2 cut(s)	38, 1019
MvaI	CCWGG	1 cut(s)	38
MvnI	CGCG	1 cut(s)	987
MwoI	GCNNNNNNNGC	1 cut(s)	313
NaeI	GCCGGC	1 cut(s)	1043
NciI	CCSGG	1 cut(s)	1019
NdeII	GATC	6 cut(s)	55, 106, 763, 1081, 1125, 1132
NgoMIV	GCCGGC	1 cut(s)	1041
NlaIII	CATG	5 cut(s)	17, 377, 600, 793, 1126
NlaIV	GGNNCC	2 cut(s)	1040, 1188
NmeAIII	GCCGAG	2 cut(s)	604, 1082
NmuCI	GTSAC	2 cut(s)	67, 379
NspI	RCATGY	1 cut(s)	600
PagI	TCATGA	1 cut(s)	789
PceI	AGGCCT	1 cut(s)	366
PdiI	GCCGGC	1 cut(s)	1043
PdmI	GAANNNNTTC	1 cut(s)	519
PfeI	GAWTC	4 cut(s)	301, 834, 1155, 1173
PkrI	GCNGC	3 cut(s)	309, 492, 989
PleI	GAGTC	1 cut(s)	589
PpsI	GAGTC	1 cut(s)	589
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	2 cut(s)	1040, 1188
PspPI	GGNCC	4 cut(s)	457, 660, 989, 1039
PsuI	RGATCY	2 cut(s)	55, 1081
RigI	GGCCGGCC	1 cut(s)	1045
SacII	CCGCGG	1 cut(s)	988
SaqAI	TTAA	1 cut(s)	647
SatI	GCNGC	3 cut(s)	308, 491, 988
Sau3AI	GATC	6 cut(s)	55, 106, 763, 1081, 1125, 1132
Sau96I	GGNCC	4 cut(s)	457, 660, 989, 1039
SchI	GAGTC	1 cut(s)	590
ScrFI	CCNGG	2 cut(s)	38, 1019
SduI	GDGCHC	2 cut(s)	350, 1091
SfaNI	GCATC	2 cut(s)	913, 1104
SfcI	CTRYAG	1 cut(s)	1150
Sfr303I	CCGCGG	1 cut(s)	988
SgrBI	CCGCGG	1 cut(s)	988
SinI	GGWCC	2 cut(s)	457, 660
SmlI	CTYRAG	1 cut(s)	940
SmoI	CTYRAG	1 cut(s)	940
SpeI	ACTAGT	1 cut(s)	742
Sse9I	AATT	7 cut(s)	76, 223, 338, 519, 567, 572, 856
SseBI	AGGCCT	1 cut(s)	366
SsiI	CCGC	4 cut(s)	947, 962, 985, 987
SspI	AATATT	1 cut(s)	753
SspMI	CTAG	5 cut(s)	216, 320, 743, 776, 1163
StuI	AGGCCT	1 cut(s)	366
StyD4I	CCNGG	2 cut(s)	36, 1017
StyI	CCWWGG	1 cut(s)	1190
TaaI	ACNGT	3 cut(s)	64, 73, 712
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	3 cut(s)	161, 704, 1203
TaqII	GACCGA	1 cut(s)	179
TasI	AATT	7 cut(s)	76, 223, 338, 519, 567, 572, 856
TauI	GCSGC	1 cut(s)	990
TfiI	GAWTC	4 cut(s)	301, 834, 1155, 1173
Tru1I	TTAA	1 cut(s)	647
Tru9I	TTAA	1 cut(s)	647
TscAI	CASTG	4 cut(s)	67, 76, 640, 717
TseFI	GTSAC	2 cut(s)	67, 379
TseI	GCWGC	2 cut(s)	307, 490
Tsp45I	GTSAC	2 cut(s)	67, 379
TspDTI	ATGAA	4 cut(s)	369, 512, 528, 1182
TspGWI	ACGGA	1 cut(s)	183
TspRI	CASTG	4 cut(s)	67, 76, 640, 717
VpaK11BI	GGWCC	2 cut(s)	457, 660
XapI	RAATTY	2 cut(s)	223, 338
XceI	RCATGY	1 cut(s)	600
XmiI	GTMKAC	2 cut(s)	431, 1149
XmnI	GAANNNNTTC	1 cut(s)	519
XspI	CTAG	5 cut(s)	216, 320, 743, 776, 1163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.