Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004386

Physical Location & Seq

Genomic Coordinates Forward (+)

14387263 .. 14391132

Gene Structure 3870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00294250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGGCATTTTGCATGAGGACATGGTGGTAATTAGCCAGAAGAAGGCTGGAGATCCTACCGTGATCACTGTGAATTGCCCTGACAAAACTGGGCTAGGCTGTGATCTGTGCAGGGTCATATTGCTCTTTGGGATAAGCATTTGCAGAGGAGATGTCACTAAGGTTCTTTGTGAGCTTGAGCTCACAATAGAGAGAGTGAAGGTGTCTACTACCCCAGATGGGAAAGTGATGGACCTTTTTTTTGTTACAGATACCAGAGAACTGCTGCATACAAAAAGAAGACAAGATGAAACAATTAATTGCCTGAAAGATGTCTTGGGGAATGTCTTGTTGGGTTGTGAAATTGAATTGGCTGAGTCAAAAGTTACCGCATGTTCACAGGGTTCTCCTTATCTTCCTTCTGTAATCACTGAAGAAATGTTAAGTTTAGAGCGGACCAATGGACGCCTAAAAAGACCTGTTGCCTCCATTCCCATTTCAATAACAGTGGACAATAACCTCAGCCCCTCTCACACACTAGTTCAAATATTCTGTCCGGATCATAAAGGTCTAGTGTATGACATCATGAGAACAATAAAGGATTATGACATTCAGATTTCTTATGGACGATTCTATGAAAACACAAGAGGGAATTGTGAGGTGGACTTGTTCATAATGCAAGCAGATGGCAAGAAGATTGTTGACCCCAATAAGCAAGATGCCTTATGTTCTCGCTTGAGAACGGAGCTTTTGTGTCCTCTTCGAGTGGCTGTGGTGAACCGTGGCCCTGACACTGAGCTGTTGGTAGCTAACCCTGTTGAGTTGTCTGGCAAGGGTCGGCCTCTTGTCTTTTATGATATTTCTCTTGCCCTCAAAGATCTGAGCACGCGCATCTTTTCGGCTGAGATAGTGAGACACATGATCCGAGATCGGGAGTGGGAGGTGTACAGATTCCTGCTAGATGAAGGAGTCTGTCCTTCAGCGCCAAAGAACAAAATTGAGGAAGGTGTAAGAAATATACTGATGGGTTGGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

338

Amino Acids

37.94

Weight (kDa)

5.58

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACR10_N	PF24914	12 - 54	9.2e-21	ACT domain-containing protein ACR10, N-terminal
ACT_ACR9_3rd	PF24931	160 - 257	9.7e-50	ACR9-like, ACT-like domain
ACT_ACR9_C	PF24926	258 - 336	5.3e-37	ACT domain-containing protein ACR9, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36840
fragaria_vesca	FvH4_6g16600 FvH4_6g16600 FvH4_7g18540
malus_domestica	MD01G1101800.v1.1 MD04G1090700.v1.1 MD12G1108700.v1.1
prunus_persica	Prupe.2G207000_v2.0.a1 Prupe.7G127300_v2.0.a1
pyrus_communis	pycom01g12840 pycom04g08590 pycom12g10900
rosa_chinensis	RchiOBHm_Chr1g0362321 RchiOBHm_Chr2g0171731 RchiOBHm_Chr3g0470541
rosa_laevigata	RLG00000024260 RLG00000027651
rosa_multiflora	Rmu_sc0002115.1_g000012 Rmu_sc0020251.1_g000001
rosa_roxburghii	Rroxscaffold_4G00294250 Rroxscaffold_6G00410740
rosa_rugosa	Rorug01G0297600 Rorug01G0297700 Rorug03G0109900
rosa_samantha	Rh1AG306300 Rh1DG300000 Rh3AG160000 Rh3BG184600 Rh3CG175100 Rh3DG190100
rosa_wichuraiana	Rw1G027190 Rw3G015140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	433
AccI	GTMKAC	1 cut(s)	206
AccII	CGCG	1 cut(s)	868
AccIII	TCCGGA	1 cut(s)	535
AciI	CCGC	2 cut(s)	369, 433
AclWI	GGATC	3 cut(s)	47, 546, 895
AcuI	CTGAAG	2 cut(s)	432, 942
AcyI	GRCGYC	1 cut(s)	445
AfaI	GTAC	1 cut(s)	926
AfiI	CCNNNNNNNGG	3 cut(s)	43, 219, 910
AgsI	TTSAA	3 cut(s)	347, 480, 524
AhlI	ACTAGT	1 cut(s)	517
AjuI	GAANNNNNNNTTGG	4 cut(s)	299, 314, 331, 346
AluBI	AGCT	5 cut(s)	175, 181, 727, 778, 788
AluI	AGCT	5 cut(s)	175, 181, 727, 778, 788
Alw21I	GWGCWC	2 cut(s)	183, 866
Alw26I	GTCTC	1 cut(s)	886
AlwI	GGATC	3 cut(s)	47, 546, 895
Aor13HI	TCCGGA	1 cut(s)	535
AoxI	GGCC	2 cut(s)	763, 818
ApeKI	GCWGC	1 cut(s)	265
ArsI	GACNNNNNNTTYG	4 cut(s)	224, 256, 517, 549
AseI	ATTAAT	1 cut(s)	297
AspLEI	GCGC	2 cut(s)	870, 964
AspS9I	GGNCC	3 cut(s)	232, 435, 764
AsuHPI	GGTGA	1 cut(s)	766
AvaII	GGWCC	2 cut(s)	232, 435
BanII	GRGCYC	1 cut(s)	183
BbsI	GAAGAC	1 cut(s)	286
Bbv12I	GWGCWC	2 cut(s)	183, 866
BbvCI	CCTCAGC	1 cut(s)	500
BbvI	GCAGC	1 cut(s)	252
BccI	CCATC	4 cut(s)	212, 223, 659, 997
BclI	TGATCA	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	886
BcuI	ACTAGT	1 cut(s)	517
BfaI	CTAG	4 cut(s)	95, 518, 551, 938
BfoI	RGCGCY	1 cut(s)	965
BglII	AGATCT	1 cut(s)	856
BisI	GCNGC	1 cut(s)	266
BlsI	GCNGC	1 cut(s)	267
Bme18I	GGWCC	2 cut(s)	232, 435
BmgT120I	GGNCC	3 cut(s)	232, 435, 764
BmrI	ACTGGG	1 cut(s)	99
BmsI	GCATC	2 cut(s)	688, 879
BmuI	ACTGGG	1 cut(s)	99
BpiI	GAAGAC	1 cut(s)	286
BpmI	CTGGAG	1 cut(s)	69
Bpu10I	CCTNAGC	1 cut(s)	500
BpuEI	CTTGAG	2 cut(s)	197, 736
BsaHI	GRCGYC	1 cut(s)	445
BsaJI	CCNNGG	1 cut(s)	760
BsaWI	WCCGGW	1 cut(s)	535
BsaXI	ACNNNNNCTCC	2 cut(s)	716, 746
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 219, 910
Bse1I	ACTGG	1 cut(s)	94
BseAI	TCCGGA	1 cut(s)	535
BseDI	CCNNGG	1 cut(s)	760
BseLI	CCNNNNNNNGG	3 cut(s)	43, 219, 910
BseMII	CTCAG	5 cut(s)	345, 514, 765, 851, 873
BseNI	ACTGG	1 cut(s)	94
BseRI	GAGGAG	1 cut(s)	162
BseXI	GCAGC	1 cut(s)	252
BsgI	GTGCAG	1 cut(s)	130
Bsh1236I	CGCG	1 cut(s)	868
BshFI	GGCC	2 cut(s)	765, 820
BsiHKAI	GWGCWC	2 cut(s)	183, 866
BsiSI	CCGG	1 cut(s)	536
BslI	CCNNNNNNNGG	3 cut(s)	43, 219, 910
BsmAI	GTCTC	1 cut(s)	886
BsnI	GGCC	2 cut(s)	765, 820
Bsp1286I	GDGCHC	2 cut(s)	183, 866
Bsp13I	TCCGGA	1 cut(s)	535
Bsp1407I	TGTACA	1 cut(s)	924
Bsp143I	GATC	7 cut(s)	52, 63, 103, 538, 856, 900, 907
BspACI	CCGC	2 cut(s)	369, 433
BspANI	GGCC	2 cut(s)	765, 820
BspCNI	CTCAG	5 cut(s)	346, 513, 766, 852, 874
BspEI	TCCGGA	1 cut(s)	535
BspFNI	CGCG	1 cut(s)	868
BspHI	TCATGA	1 cut(s)	564
BspPI	GGATC	3 cut(s)	47, 546, 895
BsrBI	CCGCTC	1 cut(s)	433
BsrGI	TGTACA	1 cut(s)	924
BsrI	ACTGG	1 cut(s)	94
BssECI	CCNNGG	1 cut(s)	760
BssMI	GATC	7 cut(s)	52, 63, 103, 538, 856, 900, 907
BssNI	GRCGYC	1 cut(s)	445
Bst4CI	ACNGT	4 cut(s)	61, 70, 487, 761
Bst6I	CTCTTC	1 cut(s)	744
BstACI	GRCGYC	1 cut(s)	445
BstAUI	TGTACA	1 cut(s)	924
BstC8I	GCNNGC	2 cut(s)	660, 866
BstDEI	CTNAG	6 cut(s)	159, 354, 500, 774, 860, 882
BstDSI	CCRYGG	1 cut(s)	760
BstFNI	CGCG	1 cut(s)	868
BstH2I	RGCGCY	1 cut(s)	965
BstHHI	GCGC	2 cut(s)	870, 964
BstKTI	GATC	7 cut(s)	55, 66, 106, 541, 859, 903, 910
BstMAI	GTCTC	1 cut(s)	886
BstMBI	GATC	7 cut(s)	52, 63, 103, 538, 856, 900, 907
BstNSI	RCATGY	1 cut(s)	375
BstUI	CGCG	1 cut(s)	868
BstV1I	GCAGC	1 cut(s)	252
BstV2I	GAAGAC	1 cut(s)	286
BstX2I	RGATCY	2 cut(s)	52, 856
BstYI	RGATCY	2 cut(s)	52, 856
BsuRI	GGCC	2 cut(s)	765, 820
BtgI	CCRYGG	1 cut(s)	760
BtsIMutI	CAGTG	4 cut(s)	66, 408, 492, 771
Cac8I	GCNNGC	2 cut(s)	660, 866
CciI	TCATGA	1 cut(s)	564
CfoI	GCGC	2 cut(s)	870, 964
Cfr13I	GGNCC	3 cut(s)	232, 435, 764
CseI	GACGC	1 cut(s)	453
Csp6I	GTAC	1 cut(s)	925
CspCI	CAANNNNNGTGG	2 cut(s)	468, 503
CviAII	CATG	5 cut(s)	14, 22, 372, 565, 898
CviQI	GTAC	1 cut(s)	925
DdeI	CTNAG	6 cut(s)	159, 354, 500, 774, 860, 882
DpnI	GATC	7 cut(s)	54, 65, 105, 540, 858, 902, 909
DpnII	GATC	7 cut(s)	52, 63, 103, 538, 856, 900, 907
Eam1104I	CTCTTC	1 cut(s)	744
EarI	CTCTTC	1 cut(s)	744
Ecl136II	GAGCTC	1 cut(s)	181
Eco24I	GRGCYC	1 cut(s)	183
Eco47I	GGWCC	2 cut(s)	232, 435
Eco53kI	GAGCTC	1 cut(s)	181
Eco57I	CTGAAG	2 cut(s)	432, 942
EcoICRI	GAGCTC	1 cut(s)	181
EcoT38I	GRGCYC	1 cut(s)	183
FaeI	CATG	5 cut(s)	17, 25, 375, 568, 901
FatI	CATG	5 cut(s)	13, 21, 371, 564, 897
FbaI	TGATCA	1 cut(s)	63
FblI	GTMKAC	1 cut(s)	206
Fnu4HI	GCNGC	1 cut(s)	266
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	1 cut(s)	266
FspBI	CTAG	4 cut(s)	95, 518, 551, 938
GlaI	GCGC	2 cut(s)	869, 963
GluI	GCNGC	1 cut(s)	266
GsuI	CTGGAG	1 cut(s)	69
HaeII	RGCGCY	1 cut(s)	965
HaeIII	GGCC	2 cut(s)	765, 820
HapII	CCGG	1 cut(s)	536
HgaI	GACGC	1 cut(s)	453
HhaI	GCGC	2 cut(s)	870, 964
Hin1I	GRCGYC	1 cut(s)	445
Hin1II	CATG	5 cut(s)	17, 25, 375, 568, 901
Hin6I	GCGC	2 cut(s)	868, 962
HinP1I	GCGC	2 cut(s)	868, 962
HincII	GTYRAC	1 cut(s)	682
HindII	GTYRAC	1 cut(s)	682
HinfI	GANTC	4 cut(s)	356, 609, 930, 948
HpaII	CCGG	1 cut(s)	536
HphI	GGTGA	1 cut(s)	766
Hpy166II	GTNNAC	7 cut(s)	207, 377, 490, 643, 682, 757, 925
Hpy188I	TCNGA	3 cut(s)	594, 861, 905
Hpy188III	TCNNGA	3 cut(s)	536, 565, 911
Hpy8I	GTNNAC	7 cut(s)	207, 377, 490, 643, 682, 757, 925
HpyAV	CCTTC	6 cut(s)	37, 193, 408, 938, 966, 977
HpyCH4III	ACNGT	4 cut(s)	61, 70, 487, 761
HpyCH4V	TGCA	5 cut(s)	13, 111, 144, 268, 658
HpyF3I	CTNAG	6 cut(s)	159, 354, 500, 774, 860, 882
Hsp92I	GRCGYC	1 cut(s)	445
Hsp92II	CATG	5 cut(s)	17, 25, 375, 568, 901
HspAI	GCGC	2 cut(s)	868, 962
Kpn2I	TCCGGA	1 cut(s)	535
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	7 cut(s)	52, 63, 103, 538, 856, 900, 907
LmnI	GCTCC	1 cut(s)	724
Lsp1109I	GCAGC	1 cut(s)	252
LweI	GCATC	2 cut(s)	688, 879
MaeI	CTAG	4 cut(s)	95, 518, 551, 938
MaeIII	GTNAC	3 cut(s)	154, 244, 364
MalI	GATC	7 cut(s)	54, 65, 105, 540, 858, 902, 909
MbiI	CCGCTC	1 cut(s)	433
MboI	GATC	7 cut(s)	52, 63, 103, 538, 856, 900, 907
MboII	GAAGA	6 cut(s)	52, 291, 386, 425, 685, 731
MflI	RGATCY	2 cut(s)	52, 856
MhlI	GDGCHC	2 cut(s)	183, 866
MluCI	AATT	8 cut(s)	30, 73, 294, 298, 342, 347, 631, 975
MlyI	GAGTC	2 cut(s)	365, 957
MroI	TCCGGA	1 cut(s)	535
MseI	TTAA	2 cut(s)	297, 422
MspI	CCGG	1 cut(s)	536
MvnI	CGCG	1 cut(s)	868
NdeII	GATC	7 cut(s)	52, 63, 103, 538, 856, 900, 907
NlaIII	CATG	5 cut(s)	17, 25, 375, 568, 901
NmuCI	GTSAC	1 cut(s)	154
NspI	RCATGY	1 cut(s)	375
PagI	TCATGA	1 cut(s)	564
PfeI	GAWTC	2 cut(s)	609, 930
PkrI	GCNGC	1 cut(s)	267
PleI	GAGTC	2 cut(s)	364, 956
PpsI	GAGTC	2 cut(s)	364, 956
PshBI	ATTAAT	1 cut(s)	297
Psp124BI	GAGCTC	1 cut(s)	183
PspPI	GGNCC	3 cut(s)	232, 435, 764
PsuI	RGATCY	2 cut(s)	52, 856
RsaI	GTAC	1 cut(s)	926
RsaNI	GTAC	1 cut(s)	925
SacI	GAGCTC	1 cut(s)	183
SaqAI	TTAA	2 cut(s)	297, 422
SatI	GCNGC	1 cut(s)	266
Sau3AI	GATC	7 cut(s)	52, 63, 103, 538, 856, 900, 907
Sau96I	GGNCC	3 cut(s)	232, 435, 764
SchI	GAGTC	2 cut(s)	365, 957
SduI	GDGCHC	2 cut(s)	183, 866
SfaNI	GCATC	2 cut(s)	688, 879
SinI	GGWCC	2 cut(s)	232, 435
SmlI	CTYRAG	2 cut(s)	176, 715
SmoI	CTYRAG	2 cut(s)	176, 715
SpeI	ACTAGT	1 cut(s)	517
Sse9I	AATT	8 cut(s)	30, 73, 294, 298, 342, 347, 631, 975
SsiI	CCGC	2 cut(s)	369, 433
SspI	AATATT	1 cut(s)	528
SspMI	CTAG	4 cut(s)	95, 518, 551, 938
SstI	GAGCTC	1 cut(s)	183
TaaI	ACNGT	4 cut(s)	61, 70, 487, 761
TaqI	TCGA	1 cut(s)	742
TasI	AATT	8 cut(s)	30, 73, 294, 298, 342, 347, 631, 975
TatI	WGTACW	1 cut(s)	924
TfiI	GAWTC	2 cut(s)	609, 930
Tru1I	TTAA	2 cut(s)	297, 422
Tru9I	TTAA	2 cut(s)	297, 422
TscAI	CASTG	4 cut(s)	73, 415, 492, 778
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	1 cut(s)	265
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	4 cut(s)	303, 630, 640, 957
TspGWI	ACGGA	1 cut(s)	737
TspRI	CASTG	4 cut(s)	73, 415, 492, 778
VpaK11BI	GGWCC	2 cut(s)	232, 435
VspI	ATTAAT	1 cut(s)	297
XceI	RCATGY	1 cut(s)	375
XcmI	CCANNNNNNNNNTGG	1 cut(s)	44
XmiI	GTMKAC	1 cut(s)	206
XspI	CTAG	4 cut(s)	95, 518, 551, 938

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.