Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020251.1

Orthogroup ID

OG0004386

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2553

Gene Structure 2553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020251.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 878 bp

tcaccggaaaacagagcaaaaaacagaggaggagctcggcggcaatgggcattttgcatgaggacatggtggtaattagccaggcaaagaaggctggagatcctactgtgatcactgtgaattgtcctgacaaaactgggctaggctgtgatctgtgcagggtcatattgctctttgggataagcatttgcagaggagatgtttcgacggatggaaagtggtgctacgtagtgttttgggtggtgggaaaaccggaaacaagttggaatttgttgacaaagagattgttagaagtgtgtccctcacattttacaacttctggaatatactattaccggccggaaaaccagcagcctaagccattagatgtgttccttttgaaattctggtgctcttatgaacaggaaggcctattgcatgatgtcactaaggttctttgtgagcttgagctcacaatagagagagtgaaggtgtctactaccccagatgggaaagtgatggaccttttttttgttacagataccagagaactgctgcatacaaaaagaagacaagatgaaacaagtaatcgcctgaaagctgtcttggggaatgtcttgttgggttgtgaaattgaattggctgagtcaaaagttaccgcatgttcacagggttctccgtatcttccttctgtaatcactgaagaaatgttaagtttagagcggaccaatggacgcctaaaaagacctgttgcctccattcccatttcaataacagtggacaataagctcagcccctctcacacactagttcaaatattctgtccggatcataaaggtctagtgtatgacatcatgagaacactaaaggattatgacattcaggtacatcttttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

291

Amino Acids

32.8

Weight (kDa)

7.95

Isoelectric Point (pI)

39.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36840
fragaria_vesca	FvH4_6g16600 FvH4_6g16600 FvH4_7g18540
malus_domestica	MD01G1101800.v1.1 MD04G1090700.v1.1 MD12G1108700.v1.1
prunus_persica	Prupe.2G207000_v2.0.a1 Prupe.7G127300_v2.0.a1
pyrus_communis	pycom01g12840 pycom04g08590 pycom12g10900
rosa_chinensis	RchiOBHm_Chr1g0362321 RchiOBHm_Chr2g0171731 RchiOBHm_Chr3g0470541
rosa_laevigata	RLG00000024260 RLG00000027651
rosa_multiflora	Rmu_sc0002115.1_g000012 Rmu_sc0020251.1_g000001
rosa_roxburghii	Rroxscaffold_4G00294250 Rroxscaffold_6G00410740
rosa_rugosa	Rorug01G0297600 Rorug01G0297700 Rorug03G0109900
rosa_samantha	Rh1AG306300 Rh1DG300000 Rh3AG160000 Rh3BG184600 Rh3CG175100 Rh3DG190100
rosa_wichuraiana	Rw1G027190 Rw3G015140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	702
AccI	GTMKAC	1 cut(s)	475
AccIII	TCCGGA	1 cut(s)	804
AciI	CCGC	3 cut(s)	40, 638, 702
AclWI	GGATC	2 cut(s)	94, 815
AcoI	YGGCCR	1 cut(s)	337
AcsI	RAATTY	2 cut(s)	267, 382
AcuI	CTGAAG	1 cut(s)	701
AcyI	GRCGYC	1 cut(s)	714
AfaI	GTAC	1 cut(s)	866
AfiI	CCNNNNNNNGG	1 cut(s)	488
AgsI	TTSAA	4 cut(s)	381, 616, 749, 793
AhlI	ACTAGT	1 cut(s)	786
AjnI	CCWGG	1 cut(s)	80
AjuI	GAANNNNNNNTTGG	4 cut(s)	568, 583, 600, 615
AluBI	AGCT	5 cut(s)	35, 444, 450, 580, 768
AluI	AGCT	5 cut(s)	35, 444, 450, 580, 768
Alw21I	GWGCWC	3 cut(s)	37, 394, 452
AlwI	GGATC	2 cut(s)	94, 815
Aor13HI	TCCGGA	1 cut(s)	804
AoxI	GGCC	2 cut(s)	337, 408
ApeKI	GCWGC	2 cut(s)	351, 534
ApoI	RAATTY	2 cut(s)	267, 382
ArsI	GACNNNNNNTTYG	4 cut(s)	493, 525, 786, 818
AspS9I	GGNCC	2 cut(s)	501, 704
AvaII	GGWCC	2 cut(s)	501, 704
BanII	GRGCYC	2 cut(s)	37, 452
BbsI	GAAGAC	1 cut(s)	555
Bbv12I	GWGCWC	3 cut(s)	37, 394, 452
BbvI	GCAGC	2 cut(s)	363, 521
BccI	CCATC	3 cut(s)	205, 481, 492
BciT130I	CCWGG	1 cut(s)	82
BclI	TGATCA	1 cut(s)	110
BcuI	ACTAGT	1 cut(s)	786
BfaI	CTAG	3 cut(s)	142, 787, 820
BisI	GCNGC	3 cut(s)	41, 352, 535
BlpI	GCTNAGC	1 cut(s)	769
BlsI	GCNGC	3 cut(s)	42, 353, 536
Bme1390I	CCNGG	1 cut(s)	82
Bme18I	GGWCC	2 cut(s)	501, 704
BmgT120I	GGNCC	2 cut(s)	501, 704
BmrFI	CCNGG	1 cut(s)	82
BmrI	ACTGGG	1 cut(s)	146
BmuI	ACTGGG	1 cut(s)	146
BpiI	GAAGAC	1 cut(s)	555
BpmI	CTGGAG	1 cut(s)	116
Bpu10I	CCTNAGC	1 cut(s)	356
Bpu1102I	GCTNAGC	1 cut(s)	769
BpuEI	CTTGAG	1 cut(s)	466
BsaAI	YACGTR	1 cut(s)	228
BsaHI	GRCGYC	1 cut(s)	714
BsaWI	WCCGGW	3 cut(s)	4, 252, 804
Bsc4I	CCNNNNNNNGG	1 cut(s)	488
Bse118I	RCCGGY	1 cut(s)	335
Bse1I	ACTGG	1 cut(s)	141
Bse3DI	GCAATG	1 cut(s)	50
BseAI	TCCGGA	1 cut(s)	804
BseBI	CCWGG	1 cut(s)	82
BseGI	GGATG	1 cut(s)	216
BseLI	CCNNNNNNNGG	1 cut(s)	488
BseMI	GCAATG	1 cut(s)	50
BseMII	CTCAG	2 cut(s)	614, 783
BseNI	ACTGG	1 cut(s)	141
BseRI	GAGGAG	3 cut(s)	42, 45, 209
BseX3I	CGGCCG	1 cut(s)	337
BseXI	GCAGC	2 cut(s)	363, 521
BsgI	GTGCAG	1 cut(s)	177
Bsh1285I	CGRYCG	1 cut(s)	340
BshFI	GGCC	2 cut(s)	339, 410
BsiEI	CGRYCG	1 cut(s)	340
BsiHKAI	GWGCWC	3 cut(s)	37, 394, 452
BsiSI	CCGG	5 cut(s)	5, 253, 336, 340, 805
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	1 cut(s)	488
BsmFI	GGGAC	1 cut(s)	284
BsnI	GGCC	2 cut(s)	339, 410
Bsp1286I	GDGCHC	3 cut(s)	37, 394, 452
Bsp13I	TCCGGA	1 cut(s)	804
Bsp143I	GATC	4 cut(s)	99, 110, 150, 807
Bsp1720I	GCTNAGC	1 cut(s)	769
BspACI	CCGC	3 cut(s)	40, 638, 702
BspANI	GGCC	2 cut(s)	339, 410
BspCNI	CTCAG	2 cut(s)	615, 782
BspEI	TCCGGA	1 cut(s)	804
BspHI	TCATGA	1 cut(s)	833
BspPI	GGATC	2 cut(s)	94, 815
BsrBI	CCGCTC	1 cut(s)	702
BsrDI	GCAATG	1 cut(s)	50
BsrFI	RCCGGY	1 cut(s)	335
BsrI	ACTGG	1 cut(s)	141
BssAI	RCCGGY	1 cut(s)	335
BssMI	GATC	4 cut(s)	99, 110, 150, 807
BssNI	GRCGYC	1 cut(s)	714
Bst2UI	CCWGG	1 cut(s)	82
Bst4CI	ACNGT	3 cut(s)	108, 117, 756
BstACI	GRCGYC	1 cut(s)	714
BstBAI	YACGTR	1 cut(s)	228
BstDEI	CTNAG	4 cut(s)	356, 428, 623, 769
BstF5I	GGATG	1 cut(s)	216
BstKTI	GATC	4 cut(s)	102, 113, 153, 810
BstMBI	GATC	4 cut(s)	99, 110, 150, 807
BstMCI	CGRYCG	1 cut(s)	340
BstMWI	GCNNNNNNNGC	2 cut(s)	91, 357
BstNI	CCWGG	1 cut(s)	82
BstNSI	RCATGY	1 cut(s)	644
BstSCI	CCNGG	1 cut(s)	80
BstSNI	TACGTA	1 cut(s)	228
BstV1I	GCAGC	2 cut(s)	363, 521
BstV2I	GAAGAC	1 cut(s)	555
BstX2I	RGATCY	1 cut(s)	99
BstYI	RGATCY	1 cut(s)	99
BstZI	CGGCCG	1 cut(s)	337
BsuRI	GGCC	2 cut(s)	339, 410
BtsCI	GGATG	1 cut(s)	216
BtsIMutI	CAGTG	3 cut(s)	113, 677, 761
CciI	TCATGA	1 cut(s)	833
Cfr10I	RCCGGY	1 cut(s)	335
Cfr13I	GGNCC	2 cut(s)	501, 704
CseI	GACGC	1 cut(s)	722
Csp6I	GTAC	1 cut(s)	865
CspCI	CAANNNNNGTGG	2 cut(s)	737, 772
CviAII	CATG	5 cut(s)	58, 66, 418, 641, 834
CviQI	GTAC	1 cut(s)	865
DdeI	CTNAG	4 cut(s)	356, 428, 623, 769
DpnI	GATC	4 cut(s)	101, 112, 152, 809
DpnII	GATC	4 cut(s)	99, 110, 150, 807
EaeI	YGGCCR	1 cut(s)	337
EagI	CGGCCG	1 cut(s)	337
Ecl136II	GAGCTC	2 cut(s)	35, 450
EclXI	CGGCCG	1 cut(s)	337
Eco105I	TACGTA	1 cut(s)	228
Eco147I	AGGCCT	1 cut(s)	410
Eco24I	GRGCYC	2 cut(s)	37, 452
Eco47I	GGWCC	2 cut(s)	501, 704
Eco52I	CGGCCG	1 cut(s)	337
Eco53kI	GAGCTC	2 cut(s)	35, 450
Eco57I	CTGAAG	1 cut(s)	701
EcoICRI	GAGCTC	2 cut(s)	35, 450
EcoRII	CCWGG	1 cut(s)	80
EcoT38I	GRGCYC	2 cut(s)	37, 452
FaeI	CATG	5 cut(s)	61, 69, 421, 644, 837
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	5 cut(s)	57, 65, 417, 640, 833
FbaI	TGATCA	1 cut(s)	110
FblI	GTMKAC	1 cut(s)	475
Fnu4HI	GCNGC	3 cut(s)	41, 352, 535
FokI	GGATG	1 cut(s)	223
FriOI	GRGCYC	2 cut(s)	37, 452
Fsp4HI	GCNGC	3 cut(s)	41, 352, 535
FspBI	CTAG	3 cut(s)	142, 787, 820
GluI	GCNGC	3 cut(s)	41, 352, 535
GsuI	CTGGAG	1 cut(s)	116
HaeIII	GGCC	2 cut(s)	339, 410
HapII	CCGG	5 cut(s)	5, 253, 336, 340, 805
HgaI	GACGC	1 cut(s)	722
Hin1I	GRCGYC	1 cut(s)	714
Hin1II	CATG	5 cut(s)	61, 69, 421, 644, 837
HincII	GTYRAC	1 cut(s)	275
HindII	GTYRAC	1 cut(s)	275
HinfI	GANTC	1 cut(s)	625
HpaII	CCGG	5 cut(s)	5, 253, 336, 340, 805
Hpy166II	GTNNAC	4 cut(s)	275, 476, 646, 759
Hpy188III	TCNNGA	4 cut(s)	127, 320, 805, 834
Hpy8I	GTNNAC	4 cut(s)	275, 476, 646, 759
Hpy99I	CGWCG	1 cut(s)	210
HpyAV	CCTTC	4 cut(s)	84, 400, 462, 677
HpyCH4III	ACNGT	3 cut(s)	108, 117, 756
HpyCH4IV	ACGT	1 cut(s)	227
HpyCH4V	TGCA	5 cut(s)	57, 158, 191, 417, 537
HpyF10VI	GCNNNNNNNGC	2 cut(s)	91, 357
HpyF3I	CTNAG	4 cut(s)	356, 428, 623, 769
HpySE526I	ACGT	1 cut(s)	227
Hsp92I	GRCGYC	1 cut(s)	714
Hsp92II	CATG	5 cut(s)	61, 69, 421, 644, 837
Kpn2I	TCCGGA	1 cut(s)	804
Ksp22I	TGATCA	1 cut(s)	110
Kzo9I	GATC	4 cut(s)	99, 110, 150, 807
LmnI	GCTCC	1 cut(s)	32
Lsp1109I	GCAGC	2 cut(s)	363, 521
MaeI	CTAG	3 cut(s)	142, 787, 820
MaeII	ACGT	1 cut(s)	227
MaeIII	GTNAC	3 cut(s)	423, 513, 633
MalI	GATC	4 cut(s)	101, 112, 152, 809
MbiI	CCGCTC	1 cut(s)	702
MboI	GATC	4 cut(s)	99, 110, 150, 807
MboII	GAAGA	3 cut(s)	560, 655, 694
MflI	RGATCY	1 cut(s)	99
MhlI	GDGCHC	3 cut(s)	37, 394, 452
MluCI	AATT	6 cut(s)	74, 120, 267, 382, 611, 616
MlyI	GAGTC	1 cut(s)	634
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	7 cut(s)	20, 23, 54, 187, 312, 744, 786
MroI	TCCGGA	1 cut(s)	804
MseI	TTAA	2 cut(s)	691, 876
MspI	CCGG	5 cut(s)	5, 253, 336, 340, 805
MspR9I	CCNGG	1 cut(s)	82
MvaI	CCWGG	1 cut(s)	82
MwoI	GCNNNNNNNGC	2 cut(s)	91, 357
NdeII	GATC	4 cut(s)	99, 110, 150, 807
NlaIII	CATG	5 cut(s)	61, 69, 421, 644, 837
NmeAIII	GCCGAG	1 cut(s)	16
NmuCI	GTSAC	1 cut(s)	423
NspI	RCATGY	1 cut(s)	644
PagI	TCATGA	1 cut(s)	833
PceI	AGGCCT	1 cut(s)	410
PkrI	GCNGC	3 cut(s)	42, 353, 536
PleI	GAGTC	1 cut(s)	633
PpsI	GAGTC	1 cut(s)	633
Ppu21I	YACGTR	1 cut(s)	228
Psp124BI	GAGCTC	2 cut(s)	37, 452
Psp6I	CCWGG	1 cut(s)	80
PspGI	CCWGG	1 cut(s)	80
PspPI	GGNCC	2 cut(s)	501, 704
PsuI	RGATCY	1 cut(s)	99
RsaI	GTAC	1 cut(s)	866
RsaNI	GTAC	1 cut(s)	865
SacI	GAGCTC	2 cut(s)	37, 452
SaqAI	TTAA	2 cut(s)	691, 876
SatI	GCNGC	3 cut(s)	41, 352, 535
Sau3AI	GATC	4 cut(s)	99, 110, 150, 807
Sau96I	GGNCC	2 cut(s)	501, 704
SchI	GAGTC	1 cut(s)	634
ScrFI	CCNGG	1 cut(s)	82
SduI	GDGCHC	3 cut(s)	37, 394, 452
SinI	GGWCC	2 cut(s)	501, 704
SmlI	CTYRAG	1 cut(s)	445
SmoI	CTYRAG	1 cut(s)	445
SnaBI	TACGTA	1 cut(s)	228
SpeI	ACTAGT	1 cut(s)	786
Sse9I	AATT	6 cut(s)	74, 120, 267, 382, 611, 616
SseBI	AGGCCT	1 cut(s)	410
SsiI	CCGC	3 cut(s)	40, 638, 702
SspI	AATATT	1 cut(s)	797
SspMI	CTAG	3 cut(s)	142, 787, 820
SstI	GAGCTC	2 cut(s)	37, 452
StuI	AGGCCT	1 cut(s)	410
StyD4I	CCNGG	1 cut(s)	80
TaaI	ACNGT	3 cut(s)	108, 117, 756
TaiI	ACGT	1 cut(s)	230
TaqI	TCGA	1 cut(s)	205
TasI	AATT	6 cut(s)	74, 120, 267, 382, 611, 616
TauI	GCSGC	1 cut(s)	43
Tru1I	TTAA	2 cut(s)	691, 876
Tru9I	TTAA	2 cut(s)	691, 876
TscAI	CASTG	3 cut(s)	120, 684, 761
TseFI	GTSAC	1 cut(s)	423
TseI	GCWGC	2 cut(s)	351, 534
Tsp45I	GTSAC	1 cut(s)	423
TspDTI	ATGAA	2 cut(s)	413, 572
TspGWI	ACGGA	2 cut(s)	223, 647
TspRI	CASTG	3 cut(s)	120, 684, 761
VpaK11BI	GGWCC	2 cut(s)	501, 704
XapI	RAATTY	2 cut(s)	267, 382
XceI	RCATGY	1 cut(s)	644
XmiI	GTMKAC	1 cut(s)	475
XspI	CTAG	3 cut(s)	142, 787, 820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.