Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004386

Physical Location & Seq

Genomic Coordinates Reverse (-)

52570846 .. 52575258

Gene Structure 4413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG300000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGGCATTTTGCATGAGGACATGGTGGTAATTAGGCAGGCAGAGAAGGCTGGAGATCCTACTGTGATCACTGTGAATTGCCCTGACAAAACTGGGCTAGGCTGTGATCTGTGCAGGGTCATATTGCTCTTTGGGATAAGCATTTGCAGAGGAGATGTTTCGACGGATGGAAAGTGGTGCTACGTAGTGTTTTGGGTGGTGGGAAAACCGGAAACAAGGTGGAATTTGTTGACAAAGAGATTGTTAGAAGTGTGTCCCTCACATTTTACAACTTCTGGAATATACTATTACCGGCCGGAAAACCAGCAGCCTAAGCCATTAGATGTGTTCCTTTTGAAATTCTGGTGCTCTTATGAACAGGAAGGCCTATTGCATGATGTCACTAAGGTTCTTTGTGAGCTTGAGCTCACAATAGAGAGAGTGAAGGTGTCTACTACCCCAGATGGGAAAGTGATGGACCTTTTTTTTGTTACAGATACCAGAGAACTGCTGCATACAAAAAGAAGACAAGATGAAACAATTAATTGCCTGAAAGCTGTCTTGGGGAATGTCTTGTTGGGTTGTGAAATTGAATTGGCTGAGTCAAAAGTTACCGCATGTTCACAGGGTTCTCCTTATCTTCCTTCTGTAATCACTGAAGAAATGTTAAGTTTAGAGTGGACCAATGGACGCCTAAAAAGACCTGTTGCCTCCATTCCCATTTCAATAACAGTGGACAATAACCTCAGCCCCTCTCACACACTAGTTCAAATATTCTGTCCGGATCATAAAGGTCTAGTGTATGACATCATGAGAACAGTAAAGGATTATGACATTCAGATTGCTTATGGACGATTCTATGAAAACACAAAAGGGAATTGTGAGGTGGACTTGTTCATAATGCAAGCAGATGGCAAGAAGATCGTTGACCCCAATAAGCAAGATGCATTATGTTCTCGCTTGAGAACGGAGCTTTTGTGTCCTCTTCGAGTGGCTGTGGTGAACCGTGGCCCTGACACTGAGCTGTTGGTAGCTAACCCTGTTGAGTTGTCTGGCAAGGGTCGGCCTCTTGTCTTTTACGATATTTCTCTTGCCCTCAAAGATCTGAGCACACGCATCTTTTCGGCTGAGATAGTGAGACACATGATCCGAGATCGGGAGTGGGAGGTGTACAGATTCCTGCTAGATGAAGGAGTCTGTCCTTCAGCGCCAAAGAACAAAATTGAGGAAGGTGTAAGAAATATACTGATGGGTTGGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

413

Amino Acids

46.85

Weight (kDa)

5.68

Isoelectric Point (pI)

35.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACR10_N	PF24914	11 - 86	5.2e-39	ACT domain-containing protein ACR10, N-terminal
ACT_ACR9_3rd	PF24931	235 - 332	5.9e-50	ACR9-like, ACT-like domain
ACT_ACR9_C	PF24926	333 - 411	7.5e-37	ACT domain-containing protein ACR9, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36840
fragaria_vesca	FvH4_6g16600 FvH4_6g16600 FvH4_7g18540
malus_domestica	MD01G1101800.v1.1 MD04G1090700.v1.1 MD12G1108700.v1.1
prunus_persica	Prupe.2G207000_v2.0.a1 Prupe.7G127300_v2.0.a1
pyrus_communis	pycom01g12840 pycom04g08590 pycom12g10900
rosa_chinensis	RchiOBHm_Chr1g0362321 RchiOBHm_Chr2g0171731 RchiOBHm_Chr3g0470541
rosa_laevigata	RLG00000024260 RLG00000027651
rosa_multiflora	Rmu_sc0002115.1_g000012 Rmu_sc0020251.1_g000001
rosa_roxburghii	Rroxscaffold_4G00294250 Rroxscaffold_6G00410740
rosa_rugosa	Rorug01G0297600 Rorug01G0297700 Rorug03G0109900
rosa_samantha	Rh1AG306300 Rh1DG300000 Rh3AG160000 Rh3BG184600 Rh3CG175100 Rh3DG190100
rosa_wichuraiana	Rw1G027190 Rw3G015140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	431
AccIII	TCCGGA	1 cut(s)	760
AciI	CCGC	1 cut(s)	594
AclWI	GGATC	3 cut(s)	50, 771, 1120
AcoI	YGGCCR	1 cut(s)	293
AcsI	RAATTY	2 cut(s)	223, 338
AcuI	CTGAAG	2 cut(s)	657, 1167
AcyI	GRCGYC	1 cut(s)	670
AfaI	GTAC	1 cut(s)	1151
AfiI	CCNNNNNNNGG	2 cut(s)	444, 1135
AgsI	TTSAA	4 cut(s)	337, 572, 705, 749
AhlI	ACTAGT	1 cut(s)	742
AjuI	GAANNNNNNNTTGG	4 cut(s)	524, 539, 556, 571
AluBI	AGCT	6 cut(s)	400, 406, 536, 952, 1003, 1013
AluI	AGCT	6 cut(s)	400, 406, 536, 952, 1003, 1013
Alw21I	GWGCWC	3 cut(s)	350, 408, 1091
Alw26I	GTCTC	1 cut(s)	1111
AlwI	GGATC	3 cut(s)	50, 771, 1120
Aor13HI	TCCGGA	1 cut(s)	760
AoxI	GGCC	4 cut(s)	293, 364, 988, 1043
ApeKI	GCWGC	2 cut(s)	307, 490
ApoI	RAATTY	2 cut(s)	223, 338
ArsI	GACNNNNNNTTYG	4 cut(s)	449, 481, 742, 774
AseI	ATTAAT	1 cut(s)	522
AspLEI	GCGC	1 cut(s)	1189
AspS9I	GGNCC	3 cut(s)	457, 660, 989
AsuHPI	GGTGA	1 cut(s)	991
AvaII	GGWCC	2 cut(s)	457, 660
BanII	GRGCYC	1 cut(s)	408
BbsI	GAAGAC	1 cut(s)	511
Bbv12I	GWGCWC	3 cut(s)	350, 408, 1091
BbvCI	CCTCAGC	1 cut(s)	725
BbvI	GCAGC	2 cut(s)	319, 477
BccI	CCATC	5 cut(s)	161, 437, 448, 884, 1222
BcgI	CGANNNNNNTGC	2 cut(s)	883, 917
BclI	TGATCA	1 cut(s)	66
BcoDI	GTCTC	1 cut(s)	1111
BcuI	ACTAGT	1 cut(s)	742
BfaI	CTAG	4 cut(s)	98, 743, 776, 1163
BfoI	RGCGCY	1 cut(s)	1190
BglII	AGATCT	1 cut(s)	1081
BisI	GCNGC	2 cut(s)	308, 491
BlsI	GCNGC	2 cut(s)	309, 492
Bme18I	GGWCC	2 cut(s)	457, 660
BmgT120I	GGNCC	3 cut(s)	457, 660, 989
BmrI	ACTGGG	1 cut(s)	102
BmsI	GCATC	2 cut(s)	913, 1104
BmuI	ACTGGG	1 cut(s)	102
BpiI	GAAGAC	1 cut(s)	511
BpmI	CTGGAG	1 cut(s)	72
Bpu10I	CCTNAGC	2 cut(s)	312, 725
BpuEI	CTTGAG	2 cut(s)	422, 961
BsaAI	YACGTR	1 cut(s)	184
BsaHI	GRCGYC	1 cut(s)	670
BsaJI	CCNNGG	1 cut(s)	985
BsaWI	WCCGGW	2 cut(s)	208, 760
BsaXI	ACNNNNNCTCC	2 cut(s)	941, 971
Bsc4I	CCNNNNNNNGG	2 cut(s)	444, 1135
Bse118I	RCCGGY	1 cut(s)	291
Bse1I	ACTGG	1 cut(s)	97
BseAI	TCCGGA	1 cut(s)	760
BseDI	CCNNGG	1 cut(s)	985
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	2 cut(s)	444, 1135
BseMII	CTCAG	5 cut(s)	570, 739, 990, 1076, 1098
BseNI	ACTGG	1 cut(s)	97
BseRI	GAGGAG	1 cut(s)	165
BseX3I	CGGCCG	1 cut(s)	293
BseXI	GCAGC	2 cut(s)	319, 477
BsgI	GTGCAG	1 cut(s)	133
Bsh1285I	CGRYCG	1 cut(s)	296
BshFI	GGCC	4 cut(s)	295, 366, 990, 1045
BsiEI	CGRYCG	1 cut(s)	296
BsiHKAI	GWGCWC	3 cut(s)	350, 408, 1091
BsiSI	CCGG	4 cut(s)	209, 292, 296, 761
BslFI	GGGAC	1 cut(s)	240
BslI	CCNNNNNNNGG	2 cut(s)	444, 1135
BsmAI	GTCTC	1 cut(s)	1111
BsmFI	GGGAC	1 cut(s)	240
BsnI	GGCC	4 cut(s)	295, 366, 990, 1045
Bsp1286I	GDGCHC	3 cut(s)	350, 408, 1091
Bsp13I	TCCGGA	1 cut(s)	760
Bsp1407I	TGTACA	1 cut(s)	1149
Bsp143I	GATC	8 cut(s)	55, 66, 106, 763, 900, 1081, 1125, 1132
BspACI	CCGC	1 cut(s)	594
BspANI	GGCC	4 cut(s)	295, 366, 990, 1045
BspCNI	CTCAG	5 cut(s)	571, 738, 991, 1077, 1099
BspEI	TCCGGA	1 cut(s)	760
BspHI	TCATGA	1 cut(s)	789
BspPI	GGATC	3 cut(s)	50, 771, 1120
BsrFI	RCCGGY	1 cut(s)	291
BsrGI	TGTACA	1 cut(s)	1149
BsrI	ACTGG	1 cut(s)	97
BssAI	RCCGGY	1 cut(s)	291
BssECI	CCNNGG	1 cut(s)	985
BssMI	GATC	8 cut(s)	55, 66, 106, 763, 900, 1081, 1125, 1132
BssNI	GRCGYC	1 cut(s)	670
Bst4CI	ACNGT	5 cut(s)	64, 73, 712, 799, 986
Bst6I	CTCTTC	1 cut(s)	969
BstACI	GRCGYC	1 cut(s)	670
BstAUI	TGTACA	1 cut(s)	1149
BstBAI	YACGTR	1 cut(s)	184
BstC8I	GCNNGC	2 cut(s)	39, 885
BstDEI	CTNAG	7 cut(s)	312, 384, 579, 725, 999, 1085, 1107
BstDSI	CCRYGG	1 cut(s)	985
BstF5I	GGATG	1 cut(s)	172
BstH2I	RGCGCY	1 cut(s)	1190
BstHHI	GCGC	1 cut(s)	1189
BstKTI	GATC	8 cut(s)	58, 69, 109, 766, 903, 1084, 1128, 1135
BstMAI	GTCTC	1 cut(s)	1111
BstMBI	GATC	8 cut(s)	55, 66, 106, 763, 900, 1081, 1125, 1132
BstMCI	CGRYCG	1 cut(s)	296
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 313
BstNSI	RCATGY	1 cut(s)	600
BstSNI	TACGTA	1 cut(s)	184
BstV1I	GCAGC	2 cut(s)	319, 477
BstV2I	GAAGAC	1 cut(s)	511
BstX2I	RGATCY	2 cut(s)	55, 1081
BstYI	RGATCY	2 cut(s)	55, 1081
BstZI	CGGCCG	1 cut(s)	293
BsuRI	GGCC	4 cut(s)	295, 366, 990, 1045
BtgI	CCRYGG	1 cut(s)	985
BtsCI	GGATG	1 cut(s)	172
BtsIMutI	CAGTG	4 cut(s)	69, 633, 717, 996
Cac8I	GCNNGC	2 cut(s)	39, 885
CciI	TCATGA	1 cut(s)	789
CfoI	GCGC	1 cut(s)	1189
Cfr10I	RCCGGY	1 cut(s)	291
Cfr13I	GGNCC	3 cut(s)	457, 660, 989
CseI	GACGC	1 cut(s)	678
Csp6I	GTAC	1 cut(s)	1150
CspCI	CAANNNNNGTGG	2 cut(s)	693, 728
CviAII	CATG	6 cut(s)	14, 22, 374, 597, 790, 1123
CviQI	GTAC	1 cut(s)	1150
DdeI	CTNAG	7 cut(s)	312, 384, 579, 725, 999, 1085, 1107
DpnI	GATC	8 cut(s)	57, 68, 108, 765, 902, 1083, 1127, 1134
DpnII	GATC	8 cut(s)	55, 66, 106, 763, 900, 1081, 1125, 1132
EaeI	YGGCCR	1 cut(s)	293
EagI	CGGCCG	1 cut(s)	293
Eam1104I	CTCTTC	1 cut(s)	969
EarI	CTCTTC	1 cut(s)	969
Ecl136II	GAGCTC	1 cut(s)	406
EclXI	CGGCCG	1 cut(s)	293
Eco105I	TACGTA	1 cut(s)	184
Eco147I	AGGCCT	1 cut(s)	366
Eco24I	GRGCYC	1 cut(s)	408
Eco47I	GGWCC	2 cut(s)	457, 660
Eco52I	CGGCCG	1 cut(s)	293
Eco53kI	GAGCTC	1 cut(s)	406
Eco57I	CTGAAG	2 cut(s)	657, 1167
EcoICRI	GAGCTC	1 cut(s)	406
EcoT22I	ATGCAT	1 cut(s)	928
EcoT38I	GRGCYC	1 cut(s)	408
FaeI	CATG	6 cut(s)	17, 25, 377, 600, 793, 1126
FaqI	GGGAC	1 cut(s)	240
FatI	CATG	6 cut(s)	13, 21, 373, 596, 789, 1122
FbaI	TGATCA	1 cut(s)	66
FblI	GTMKAC	1 cut(s)	431
Fnu4HI	GCNGC	2 cut(s)	308, 491
FokI	GGATG	1 cut(s)	179
FriOI	GRGCYC	1 cut(s)	408
Fsp4HI	GCNGC	2 cut(s)	308, 491
FspBI	CTAG	4 cut(s)	98, 743, 776, 1163
GlaI	GCGC	1 cut(s)	1188
GluI	GCNGC	2 cut(s)	308, 491
GsuI	CTGGAG	1 cut(s)	72
HaeII	RGCGCY	1 cut(s)	1190
HaeIII	GGCC	4 cut(s)	295, 366, 990, 1045
HapII	CCGG	4 cut(s)	209, 292, 296, 761
HgaI	GACGC	1 cut(s)	678
HhaI	GCGC	1 cut(s)	1189
Hin1I	GRCGYC	1 cut(s)	670
Hin1II	CATG	6 cut(s)	17, 25, 377, 600, 793, 1126
Hin6I	GCGC	1 cut(s)	1187
HinP1I	GCGC	1 cut(s)	1187
HincII	GTYRAC	2 cut(s)	231, 907
HindII	GTYRAC	2 cut(s)	231, 907
HinfI	GANTC	4 cut(s)	581, 834, 1155, 1173
HpaII	CCGG	4 cut(s)	209, 292, 296, 761
HphI	GGTGA	1 cut(s)	991
Hpy166II	GTNNAC	9 cut(s)	231, 432, 602, 660, 715, 868, 907, 982, 1150
Hpy188I	TCNGA	3 cut(s)	819, 1086, 1130
Hpy188III	TCNNGA	4 cut(s)	276, 761, 790, 1136
Hpy8I	GTNNAC	9 cut(s)	231, 432, 602, 660, 715, 868, 907, 982, 1150
Hpy99I	CGWCG	1 cut(s)	166
HpyAV	CCTTC	7 cut(s)	40, 356, 418, 633, 1163, 1191, 1202
HpyCH4III	ACNGT	5 cut(s)	64, 73, 712, 799, 986
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	7 cut(s)	13, 114, 147, 373, 493, 883, 926
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 313
HpyF3I	CTNAG	7 cut(s)	312, 384, 579, 725, 999, 1085, 1107
HpySE526I	ACGT	1 cut(s)	183
Hsp92I	GRCGYC	1 cut(s)	670
Hsp92II	CATG	6 cut(s)	17, 25, 377, 600, 793, 1126
HspAI	GCGC	1 cut(s)	1187
Kpn2I	TCCGGA	1 cut(s)	760
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	8 cut(s)	55, 66, 106, 763, 900, 1081, 1125, 1132
LmnI	GCTCC	1 cut(s)	949
Lsp1109I	GCAGC	2 cut(s)	319, 477
LweI	GCATC	2 cut(s)	913, 1104
MaeI	CTAG	4 cut(s)	98, 743, 776, 1163
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	3 cut(s)	379, 469, 589
MalI	GATC	8 cut(s)	57, 68, 108, 765, 902, 1083, 1127, 1134
MboI	GATC	8 cut(s)	55, 66, 106, 763, 900, 1081, 1125, 1132
MboII	GAAGA	5 cut(s)	516, 611, 650, 910, 956
MflI	RGATCY	2 cut(s)	55, 1081
MhlI	GDGCHC	3 cut(s)	350, 408, 1091
MlyI	GAGTC	2 cut(s)	590, 1182
Mph1103I	ATGCAT	1 cut(s)	928
MroI	TCCGGA	1 cut(s)	760
MseI	TTAA	2 cut(s)	522, 647
MspI	CCGG	4 cut(s)	209, 292, 296, 761
MwoI	GCNNNNNNNGC	2 cut(s)	47, 313
NdeII	GATC	8 cut(s)	55, 66, 106, 763, 900, 1081, 1125, 1132
NlaIII	CATG	6 cut(s)	17, 25, 377, 600, 793, 1126
NmuCI	GTSAC	1 cut(s)	379
NsiI	ATGCAT	1 cut(s)	928
NspI	RCATGY	1 cut(s)	600
PagI	TCATGA	1 cut(s)	789
PceI	AGGCCT	1 cut(s)	366
PfeI	GAWTC	2 cut(s)	834, 1155
PkrI	GCNGC	2 cut(s)	309, 492
PleI	GAGTC	2 cut(s)	589, 1181
PpsI	GAGTC	2 cut(s)	589, 1181
Ppu21I	YACGTR	1 cut(s)	184
PshBI	ATTAAT	1 cut(s)	522
Psp124BI	GAGCTC	1 cut(s)	408
PspPI	GGNCC	3 cut(s)	457, 660, 989
PsuI	RGATCY	2 cut(s)	55, 1081
RsaI	GTAC	1 cut(s)	1151
RsaNI	GTAC	1 cut(s)	1150
SacI	GAGCTC	1 cut(s)	408
SaqAI	TTAA	2 cut(s)	522, 647
SatI	GCNGC	2 cut(s)	308, 491
Sau3AI	GATC	8 cut(s)	55, 66, 106, 763, 900, 1081, 1125, 1132
Sau96I	GGNCC	3 cut(s)	457, 660, 989
SchI	GAGTC	2 cut(s)	590, 1182
SduI	GDGCHC	3 cut(s)	350, 408, 1091
SfaNI	GCATC	2 cut(s)	913, 1104
SinI	GGWCC	2 cut(s)	457, 660
SmlI	CTYRAG	2 cut(s)	401, 940
SmoI	CTYRAG	2 cut(s)	401, 940
SnaBI	TACGTA	1 cut(s)	184
SpeI	ACTAGT	1 cut(s)	742
SseBI	AGGCCT	1 cut(s)	366
SsiI	CCGC	1 cut(s)	594
SspI	AATATT	1 cut(s)	753
SspMI	CTAG	4 cut(s)	98, 743, 776, 1163
SstI	GAGCTC	1 cut(s)	408
StuI	AGGCCT	1 cut(s)	366
TaaI	ACNGT	5 cut(s)	64, 73, 712, 799, 986
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	2 cut(s)	161, 967
TatI	WGTACW	1 cut(s)	1149
TfiI	GAWTC	2 cut(s)	834, 1155
Tru1I	TTAA	2 cut(s)	522, 647
Tru9I	TTAA	2 cut(s)	522, 647
TscAI	CASTG	4 cut(s)	76, 640, 717, 1003
TseFI	GTSAC	1 cut(s)	379
TseI	GCWGC	2 cut(s)	307, 490
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	5 cut(s)	369, 528, 855, 865, 1182
TspGWI	ACGGA	2 cut(s)	179, 962
TspRI	CASTG	4 cut(s)	76, 640, 717, 1003
VpaK11BI	GGWCC	2 cut(s)	457, 660
VspI	ATTAAT	1 cut(s)	522
XapI	RAATTY	2 cut(s)	223, 338
XceI	RCATGY	1 cut(s)	600
XmiI	GTMKAC	1 cut(s)	431
XspI	CTAG	4 cut(s)	98, 743, 776, 1163
Zsp2I	ATGCAT	1 cut(s)	928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.