Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0004386

Physical Location & Seq

Genomic Coordinates Reverse (-)

10297777 .. 10299254

Gene Structure 1478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g08590.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGACCTGTTTTTCATCACAGACACCAGGGAACTTATGCATACAAATAAGAGAAAGGAGGAGGTATATGACTACTTAAAAGAAGTCACGGGAAACGCCATGATAAGTTGTGAAATTGAAATGGTTGGCCCTGAGATTACTGCATGTTCGCAGGCATCTTCATTTCTTCCCACCGCAATTACAGAAGACATGTTTGATTTGGAAATGCCCAAAGAACTCCGAAGTGGATCACTCACTTCCAAAAGTGTTTCTGTGACCATGGACAACACGCTCAGTCCTAGTCACACGCTGGTCCAAATCATTTGCATAGACCACAAAGGTCTTCTTTATGATATAATGAGAACACTAAAGGATTACAATATTCAGATCTCTTATGGGCGCTTTTATATAAAACAAAAAAAACACTGTGAGATAGACTTGTTCATCATGCAAGCTGATGGAAAGAAGATAGTTGACCCTAGCAAGCAGAATGCATTGACATCCCGTTTGCAGCTGGAACTAATTCGTCCTCTCAGAGTAGCTATTGTTAACCGAGGTCCGGACACAGAGCTCCTGGTTGCAAACCCTGTGGAATTATCTGGCAAGGGCCGGCCTCTTGTTTTTTATGATATCACCCTTGCTTTCAAGATGCTGGACATTGGTGTCTTTTCGGCTAAGATTGGACGGCATCTGATTGGAGGTAGGGAATGGGAAGTTTATAGAGTCTTGATTGACGAAGGAGACGGCTTGTCAGTTCCAAGGAGCACGATTGAGGGACAAGTTTGGAAGATGCTGATGGGTTGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT

Protein Analysis

263

Amino Acids

29.77

Weight (kDa)

5.65

Isoelectric Point (pI)

44.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36840
fragaria_vesca	FvH4_6g16600 FvH4_6g16600 FvH4_7g18540
malus_domestica	MD01G1101800.v1.1 MD04G1090700.v1.1 MD12G1108700.v1.1
prunus_persica	Prupe.2G207000_v2.0.a1 Prupe.7G127300_v2.0.a1
pyrus_communis	pycom01g12840 pycom04g08590 pycom12g10900
rosa_chinensis	RchiOBHm_Chr1g0362321 RchiOBHm_Chr2g0171731 RchiOBHm_Chr3g0470541
rosa_laevigata	RLG00000024260 RLG00000027651
rosa_multiflora	Rmu_sc0002115.1_g000012 Rmu_sc0020251.1_g000001
rosa_roxburghii	Rroxscaffold_4G00294250 Rroxscaffold_6G00410740
rosa_rugosa	Rorug01G0297600 Rorug01G0297700 Rorug03G0109900
rosa_samantha	Rh1AG306300 Rh1DG300000 Rh3AG160000 Rh3BG184600 Rh3CG175100 Rh3DG190100
rosa_wichuraiana	Rw1G027190 Rw3G015140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	641
AccIII	TCCGGA	1 cut(s)	538
AciI	CCGC	1 cut(s)	174
AclWI	GGATC	1 cut(s)	235
AfiI	CCNNNNNNNGG	1 cut(s)	538
AflIII	ACRYGT	1 cut(s)	189
AgsI	TTSAA	2 cut(s)	119, 625
AhdI	GACNNNNNGTC	1 cut(s)	727
AjnI	CCWGG	2 cut(s)	26, 552
AluBI	AGCT	4 cut(s)	434, 493, 521, 550
AluI	AGCT	4 cut(s)	434, 493, 521, 550
Alw21I	GWGCWC	2 cut(s)	552, 746
Alw26I	GTCTC	1 cut(s)	714
AlwI	GGATC	1 cut(s)	235
Aor13HI	TCCGGA	1 cut(s)	538
AoxI	GGCC	3 cut(s)	127, 586, 590
ApeKI	GCWGC	1 cut(s)	490
ArsI	GACNNNNNNTTYG	2 cut(s)	469, 501
Asp700I	GAANNNNTTC	1 cut(s)	501
AspLEI	GCGC	1 cut(s)	381
AspS9I	GGNCC	5 cut(s)	4, 128, 292, 536, 586
AsuHPI	GGTGA	1 cut(s)	604
AvaII	GGWCC	3 cut(s)	4, 292, 536
BanII	GRGCYC	1 cut(s)	552
BbsI	GAAGAC	2 cut(s)	192, 314
Bbv12I	GWGCWC	2 cut(s)	552, 746
BbvI	GCAGC	1 cut(s)	502
BccI	CCATC	2 cut(s)	431, 769
BceAI	ACGGC	2 cut(s)	680, 739
BciT130I	CCWGG	2 cut(s)	28, 554
BcoDI	GTCTC	1 cut(s)	714
BfaI	CTAG	2 cut(s)	279, 459
BfoI	RGCGCY	1 cut(s)	382
BglII	AGATCT	1 cut(s)	366
BisI	GCNGC	1 cut(s)	491
BlsI	GCNGC	1 cut(s)	492
Bme1390I	CCNGG	2 cut(s)	28, 554
Bme18I	GGWCC	3 cut(s)	4, 292, 536
BmeRI	GACNNNNNGTC	1 cut(s)	727
BmgT120I	GGNCC	5 cut(s)	4, 128, 292, 536, 586
BmrFI	CCNGG	2 cut(s)	28, 554
BmsI	GCATC	4 cut(s)	164, 618, 676, 759
BpiI	GAAGAC	2 cut(s)	192, 314
BsaJI	CCNNGG	4 cut(s)	27, 258, 532, 737
BsaWI	WCCGGW	1 cut(s)	538
Bsc4I	CCNNNNNNNGG	1 cut(s)	538
Bse118I	RCCGGY	1 cut(s)	588
BseAI	TCCGGA	1 cut(s)	538
BseBI	CCWGG	2 cut(s)	28, 554
BseDI	CCNNGG	4 cut(s)	27, 258, 532, 737
BseGI	GGATG	1 cut(s)	479
BseLI	CCNNNNNNNGG	1 cut(s)	538
BseMII	CTCAG	3 cut(s)	123, 286, 526
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	502
BshFI	GGCC	3 cut(s)	129, 588, 592
BsiHKAI	GWGCWC	2 cut(s)	552, 746
BsiSI	CCGG	2 cut(s)	539, 589
BslFI	GGGAC	1 cut(s)	768
BslI	CCNNNNNNNGG	1 cut(s)	538
BsmAI	GTCTC	1 cut(s)	714
BsmBI	CGTCTC	1 cut(s)	714
BsmFI	GGGAC	1 cut(s)	768
BsmI	GAATGC	1 cut(s)	475
BsnI	GGCC	3 cut(s)	129, 588, 592
Bsp1286I	GDGCHC	2 cut(s)	552, 746
Bsp13I	TCCGGA	1 cut(s)	538
Bsp143I	GATC	2 cut(s)	227, 366
Bsp19I	CCATGG	1 cut(s)	258
BspACI	CCGC	1 cut(s)	174
BspANI	GGCC	3 cut(s)	129, 588, 592
BspCNI	CTCAG	3 cut(s)	124, 285, 525
BspEI	TCCGGA	1 cut(s)	538
BspPI	GGATC	1 cut(s)	235
BsrFI	RCCGGY	1 cut(s)	588
BssAI	RCCGGY	1 cut(s)	588
BssECI	CCNNGG	4 cut(s)	27, 258, 532, 737
BssMI	GATC	2 cut(s)	227, 366
BssT1I	CCWWGG	2 cut(s)	258, 737
Bst2UI	CCWGG	2 cut(s)	28, 554
Bst4CI	ACNGT	1 cut(s)	407
BstC8I	GCNNGC	4 cut(s)	153, 432, 464, 590
BstDEI	CTNAG	4 cut(s)	132, 272, 512, 654
BstDSI	CCRYGG	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	479
BstH2I	RGCGCY	1 cut(s)	382
BstHHI	GCGC	1 cut(s)	381
BstKTI	GATC	2 cut(s)	230, 369
BstMAI	GTCTC	1 cut(s)	714
BstMBI	GATC	2 cut(s)	227, 366
BstNI	CCWGG	2 cut(s)	28, 554
BstNSI	RCATGY	2 cut(s)	147, 193
BstSCI	CCNGG	2 cut(s)	26, 552
BstV1I	GCAGC	1 cut(s)	502
BstV2I	GAAGAC	2 cut(s)	192, 314
BstX2I	RGATCY	1 cut(s)	366
BstYI	RGATCY	1 cut(s)	366
BsuRI	GGCC	3 cut(s)	129, 588, 592
BtgI	CCRYGG	1 cut(s)	258
BtsCI	GGATG	1 cut(s)	479
BtsIMutI	CAGTG	1 cut(s)	403
Cac8I	GCNNGC	4 cut(s)	153, 432, 464, 590
CfoI	GCGC	1 cut(s)	381
Cfr10I	RCCGGY	1 cut(s)	588
Cfr13I	GGNCC	5 cut(s)	4, 128, 292, 536, 586
CspCI	CAANNNNNGTGG	2 cut(s)	549, 584
CviAII	CATG	5 cut(s)	100, 144, 190, 259, 427
CviJI	RGCY	9 cut(s)	129, 434, 493, 521, 550, 588, 592, 653, 726
CviKI_1	RGCY	9 cut(s)	129, 434, 493, 521, 550, 588, 592, 653, 726
DdeI	CTNAG	4 cut(s)	132, 272, 512, 654
DpnI	GATC	2 cut(s)	229, 368
DpnII	GATC	2 cut(s)	227, 366
DrdI	GACNNNNNNGTC	1 cut(s)	641
DriI	GACNNNNNGTC	1 cut(s)	727
DseDI	GACNNNNNNGTC	1 cut(s)	641
Eam1105I	GACNNNNNGTC	1 cut(s)	727
Ecl136II	GAGCTC	1 cut(s)	550
Eco130I	CCWWGG	2 cut(s)	258, 737
Eco24I	GRGCYC	1 cut(s)	552
Eco32I	GATATC	1 cut(s)	610
Eco47I	GGWCC	3 cut(s)	4, 292, 536
Eco53kI	GAGCTC	1 cut(s)	550
EcoICRI	GAGCTC	1 cut(s)	550
EcoRII	CCWGG	2 cut(s)	26, 552
EcoRV	GATATC	1 cut(s)	610
EcoT14I	CCWWGG	2 cut(s)	258, 737
EcoT22I	ATGCAT	2 cut(s)	42, 475
EcoT38I	GRGCYC	1 cut(s)	552
ErhI	CCWWGG	2 cut(s)	258, 737
Esp3I	CGTCTC	1 cut(s)	714
FaeI	CATG	5 cut(s)	103, 147, 193, 262, 430
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FaqI	GGGAC	1 cut(s)	768
FatI	CATG	5 cut(s)	99, 143, 189, 258, 426
Fnu4HI	GCNGC	1 cut(s)	491
FokI	GGATG	1 cut(s)	466
FriOI	GRGCYC	1 cut(s)	552
FseI	GGCCGGCC	1 cut(s)	592
Fsp4HI	GCNGC	1 cut(s)	491
FspBI	CTAG	2 cut(s)	279, 459
GlaI	GCGC	1 cut(s)	380
GluI	GCNGC	1 cut(s)	491
HaeII	RGCGCY	1 cut(s)	382
HaeIII	GGCC	3 cut(s)	129, 588, 592
HapII	CCGG	2 cut(s)	539, 589
HhaI	GCGC	1 cut(s)	381
Hin1II	CATG	5 cut(s)	103, 147, 193, 262, 430
Hin6I	GCGC	1 cut(s)	379
HinP1I	GCGC	1 cut(s)	379
HincII	GTYRAC	2 cut(s)	454, 529
HindII	GTYRAC	2 cut(s)	454, 529
HinfI	GANTC	1 cut(s)	702
HpaI	GTTAAC	1 cut(s)	529
HpaII	CCGG	2 cut(s)	539, 589
HphI	GGTGA	1 cut(s)	604
Hpy166II	GTNNAC	2 cut(s)	454, 529
Hpy188I	TCNGA	4 cut(s)	221, 366, 515, 672
Hpy188III	TCNNGA	3 cut(s)	539, 625, 706
Hpy8I	GTNNAC	2 cut(s)	454, 529
HpyAV	CCTTC	1 cut(s)	710
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4V	TGCA	7 cut(s)	40, 143, 306, 430, 473, 490, 560
HpyF3I	CTNAG	4 cut(s)	132, 272, 512, 654
Hsp92II	CATG	5 cut(s)	103, 147, 193, 262, 430
HspAI	GCGC	1 cut(s)	379
Kpn2I	TCCGGA	1 cut(s)	538
KroI	GCCGGC	1 cut(s)	588
KroNI	GCCGGC	1 cut(s)	590
KspAI	GTTAAC	1 cut(s)	529
Kzo9I	GATC	2 cut(s)	227, 366
LmnI	GCTCC	2 cut(s)	555, 741
Lsp1109I	GCAGC	1 cut(s)	502
LweI	GCATC	4 cut(s)	164, 618, 676, 759
MaeI	CTAG	2 cut(s)	279, 459
MaeIII	GTNAC	3 cut(s)	85, 253, 281
MalI	GATC	2 cut(s)	229, 368
MboI	GATC	2 cut(s)	227, 366
MboII	GAAGA	6 cut(s)	150, 158, 197, 314, 457, 778
MflI	RGATCY	1 cut(s)	366
MhlI	GDGCHC	2 cut(s)	552, 746
MluCI	AATT	4 cut(s)	114, 177, 501, 572
MlyI	GAGTC	1 cut(s)	711
MnlI	CCTC	7 cut(s)	52, 55, 519, 527, 603, 671, 745
Mph1103I	ATGCAT	2 cut(s)	42, 475
MroI	TCCGGA	1 cut(s)	538
MroNI	GCCGGC	1 cut(s)	588
MroXI	GAANNNNTTC	1 cut(s)	501
MseI	TTAA	2 cut(s)	77, 528
MspA1I	CMGCKG	1 cut(s)	493
MspI	CCGG	2 cut(s)	539, 589
MspR9I	CCNGG	2 cut(s)	28, 554
Mva1269I	GAATGC	1 cut(s)	475
MvaI	CCWGG	2 cut(s)	28, 554
NaeI	GCCGGC	1 cut(s)	590
NcoI	CCATGG	1 cut(s)	258
NdeII	GATC	2 cut(s)	227, 366
NgoMIV	GCCGGC	1 cut(s)	588
NlaIII	CATG	5 cut(s)	103, 147, 193, 262, 430
NmuCI	GTSAC	3 cut(s)	85, 253, 281
NsiI	ATGCAT	2 cut(s)	42, 475
NspI	RCATGY	2 cut(s)	147, 193
PciI	ACATGT	1 cut(s)	189
PctI	GAATGC	1 cut(s)	475
PdiI	GCCGGC	1 cut(s)	590
PdmI	GAANNNNTTC	1 cut(s)	501
PkrI	GCNGC	1 cut(s)	492
PleI	GAGTC	1 cut(s)	710
PpsI	GAGTC	1 cut(s)	710
PscI	ACATGT	1 cut(s)	189
Psp124BI	GAGCTC	1 cut(s)	552
Psp6I	CCWGG	2 cut(s)	26, 552
PspGI	CCWGG	2 cut(s)	26, 552
PspPI	GGNCC	5 cut(s)	4, 128, 292, 536, 586
PsuI	RGATCY	1 cut(s)	366
PvuII	CAGCTG	1 cut(s)	493
RigI	GGCCGGCC	1 cut(s)	592
SacI	GAGCTC	1 cut(s)	552
SaqAI	TTAA	2 cut(s)	77, 528
SatI	GCNGC	1 cut(s)	491
Sau3AI	GATC	2 cut(s)	227, 366
Sau96I	GGNCC	5 cut(s)	4, 128, 292, 536, 586
SchI	GAGTC	1 cut(s)	711
ScrFI	CCNGG	2 cut(s)	28, 554
SduI	GDGCHC	2 cut(s)	552, 746
SetI	ASST	9 cut(s)	9, 66, 322, 436, 495, 523, 538, 552, 682
SfaNI	GCATC	4 cut(s)	164, 618, 676, 759
SinI	GGWCC	3 cut(s)	4, 292, 536
Sse9I	AATT	4 cut(s)	114, 177, 501, 572
SsiI	CCGC	1 cut(s)	174
SspI	AATATT	1 cut(s)	361
SspMI	CTAG	2 cut(s)	279, 459
SstI	GAGCTC	1 cut(s)	552
StyD4I	CCNGG	2 cut(s)	26, 552
StyI	CCWWGG	2 cut(s)	258, 737
TaaI	ACNGT	1 cut(s)	407
TasI	AATT	4 cut(s)	114, 177, 501, 572
Tru1I	TTAA	2 cut(s)	77, 528
Tru9I	TTAA	2 cut(s)	77, 528
TscAI	CASTG	1 cut(s)	410
TseFI	GTSAC	3 cut(s)	85, 253, 281
TseI	GCWGC	1 cut(s)	490
Tsp45I	GTSAC	3 cut(s)	85, 253, 281
TspDTI	ATGAA	3 cut(s)	4, 150, 412
TspRI	CASTG	1 cut(s)	410
VpaK11BI	GGWCC	3 cut(s)	4, 292, 536
XceI	RCATGY	2 cut(s)	147, 193
XmnI	GAANNNNTTC	1 cut(s)	501
XspI	CTAG	2 cut(s)	279, 459
Zsp2I	ATGCAT	2 cut(s)	42, 475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.