Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0004386

Physical Location & Seq

Genomic Coordinates Forward (+)

15556375 .. 15559005

Gene Structure 2631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G015140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGGTATTCTACACGACGATGTGGTAATCATCACAGAGCCAGGGAAAGAAGGCGACCCAAGTGTGATTACCATAAATTGCCCAGACAAAACCGGCTTGGGCTGTGACTTGTGTCGCATCATTCTCTTCTTTGGTCTTAGCATTGTCAGAGGAGATGTATCAACGGATGGGAAGTGGTGCTTCTTAGTGTTTTGGGTGGTTGGGAACTCAGGAACAAGGTGGGATTTGTTGAAGAGGAGGTTAATGGAGACTTGTCCATCTTTTTCTTCAGCTTCTGGGATTTCCTTTTACCGCTATGAATTGCAGCCTCCAAAGCCTCCAGATGTGTTCCTTCTCAAGTTCTGTTGTTATGATCGGAGAGGGATTTTACATGATGTGACAGAGGTTCTATGTGAACTCGAGCTCACCATAAAAAAAGTCAAGGTATCCACCACCCCGGATGGGAAAGTGATTGACCTGTTTTTCGTCACAGACACTAGGGAACTTCTCCATACAAATAAGAGAAAGGATGAGGTATCTGACCACTTAAAAGCTGCTACGGCCAATGCCATGATAAGTTTTGATATTGAAATGGTTGGTCCAGAGATTACTGCATGTTCACAGTCATCTTCATTTCTCCCATCTGTTCTTATGGAGGACATGTTTCATTTGGAAGTGCCTGATAAACTCCCAAGTGGAGTAGTCACCTCTAGCTGTGTTTCTGTGAATATGGACAATTCACTCAGTCCTGGCCACACACTGGTCCAAATCGTTTGCAAAGATCACAAAGGCCTCCTTTATGATATAATGAGAACTCTAAAGGATTATAATATTCAGATCTCTTATGGGCGCTTCTCTACAAAACAAAGAAGAAACTGTGAGATTGACTTGTTCATTGTGCAAGCTGATGGAAAGAAGATTGTTGATCCAAGCAAGCAGAATGCGTTGACATCTCGTTTGCGGATGGAACTACTTCGTCCTCTCAGAGTAGCTGTTGTTAGCAAAGGTCCTGATACAGAGCTCCTGGTTGCTAATCCGGTGGAATTATCTGGGAAAGGCCGGCCTCTTGTTTTCCATGATGTAACCCTTGCTCTCAAGATGCTGGACACTGGCATATTTTCAGCTAAGATTGGAAGGCATTTAGTTAAAGATCGGGAATGGGAAGTTTATAGAGTCTTGCTTGATGAAGGAGATGGATTGCCAGTTCCAAGGAACAAGATTGAAGAAGGAGTTTGGAAGATGTTGATGGGTTGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT

Protein Analysis

412

Amino Acids

46.25

Weight (kDa)

6.18

Isoelectric Point (pI)

36.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACR10_N	PF24914	12 - 86	1.3e-38	ACT domain-containing protein ACR10, N-terminal
ACT_ACR9_3rd	PF24931	234 - 331	3.8e-50	ACR9-like, ACT-like domain
ACT_ACR9_C	PF24926	332 - 410	1.3e-37	ACT domain-containing protein ACR9, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36840
fragaria_vesca	FvH4_6g16600 FvH4_6g16600 FvH4_7g18540
malus_domestica	MD01G1101800.v1.1 MD04G1090700.v1.1 MD12G1108700.v1.1
prunus_persica	Prupe.2G207000_v2.0.a1 Prupe.7G127300_v2.0.a1
pyrus_communis	pycom01g12840 pycom04g08590 pycom12g10900
rosa_chinensis	RchiOBHm_Chr1g0362321 RchiOBHm_Chr2g0171731 RchiOBHm_Chr3g0470541
rosa_laevigata	RLG00000024260 RLG00000027651
rosa_multiflora	Rmu_sc0002115.1_g000012 Rmu_sc0020251.1_g000001
rosa_roxburghii	Rroxscaffold_4G00294250 Rroxscaffold_6G00410740
rosa_rugosa	Rorug01G0297600 Rorug01G0297700 Rorug03G0109900
rosa_samantha	Rh1AG306300 Rh1DG300000 Rh3AG160000 Rh3BG184600 Rh3CG175100 Rh3DG190100
rosa_wichuraiana	Rw1G027190 Rw3G015140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	807
AccB7I	CCANNNNNTGG	1 cut(s)	739
AciI	CCGC	2 cut(s)	292, 940
AclWI	GGATC	1 cut(s)	899
AcoI	YGGCCR	2 cut(s)	540, 730
AcuI	CTGAAG	1 cut(s)	252
AfiI	CCNNNNNNNGG	2 cut(s)	441, 739
AflIII	ACRYGT	1 cut(s)	639
AgsI	TTSAA	3 cut(s)	232, 569, 1202
AjnI	CCWGG	3 cut(s)	40, 727, 1002
AloI	GAACNNNNNNTCC	2 cut(s)	1167, 1199
AluBI	AGCT	8 cut(s)	272, 403, 533, 693, 884, 971, 1000, 1103
AluI	AGCT	8 cut(s)	272, 403, 533, 693, 884, 971, 1000, 1103
Alw21I	GWGCWC	2 cut(s)	405, 1002
Alw26I	GTCTC	1 cut(s)	242
AlwI	GGATC	1 cut(s)	899
AlwNI	CAGNNNCTG	1 cut(s)	275
Ama87I	CYCGRG	1 cut(s)	398
AoxI	GGCC	5 cut(s)	540, 730, 769, 1036, 1040
ApeKI	GCWGC	2 cut(s)	304, 533
ArsI	GACNNNNNNTTYG	4 cut(s)	446, 478, 919, 951
Asp700I	GAANNNNTTC	1 cut(s)	951
AspLEI	GCGC	1 cut(s)	831
AspS9I	GGNCC	3 cut(s)	578, 742, 986
AsuC2I	CCSGG	1 cut(s)	437
AsuHPI	GGTGA	2 cut(s)	397, 676
AvaI	CYCGRG	1 cut(s)	398
AvaII	GGWCC	3 cut(s)	578, 742, 986
BalI	TGGCCA	1 cut(s)	732
BanII	GRGCYC	2 cut(s)	405, 1002
Bbv12I	GWGCWC	2 cut(s)	405, 1002
BbvI	GCAGC	2 cut(s)	316, 520
BccI	CCATC	8 cut(s)	161, 265, 434, 628, 881, 937, 1166, 1219
BceAI	ACGGC	1 cut(s)	555
BciT130I	CCWGG	3 cut(s)	42, 729, 1004
BciVI	GTATCC	1 cut(s)	436
BcnI	CCSGG	1 cut(s)	437
BcoDI	GTCTC	1 cut(s)	242
BfaI	CTAG	2 cut(s)	477, 690
BfoI	RGCGCY	1 cut(s)	832
BfuI	GTATCC	1 cut(s)	436
BglII	AGATCT	1 cut(s)	816
BisI	GCNGC	2 cut(s)	305, 534
BlsI	GCNGC	2 cut(s)	306, 535
Bme1390I	CCNGG	4 cut(s)	42, 437, 729, 1004
Bme18I	GGWCC	3 cut(s)	578, 742, 986
BmeT110I	CYCGRG	1 cut(s)	398
BmgT120I	GGNCC	3 cut(s)	578, 742, 986
BmrFI	CCNGG	4 cut(s)	42, 437, 729, 1004
BmsI	GCATC	2 cut(s)	126, 1068
BoxI	GACNNNNGTC	1 cut(s)	111
BpmI	CTGGAG	1 cut(s)	303
BpuEI	CTTGAG	2 cut(s)	320, 1058
BpuMI	CCSGG	1 cut(s)	437
BsaJI	CCNNGG	3 cut(s)	41, 435, 1187
BsaWI	WCCGGW	1 cut(s)	1015
BsaXI	ACNNNNNCTCC	2 cut(s)	626, 656
Bsc4I	CCNNNNNNNGG	2 cut(s)	441, 739
Bse118I	RCCGGY	2 cut(s)	92, 1038
Bse1I	ACTGG	3 cut(s)	744, 1093, 1181
BseBI	CCWGG	3 cut(s)	42, 729, 1004
BseDI	CCNNGG	3 cut(s)	41, 435, 1187
BseGI	GGATG	4 cut(s)	172, 445, 514, 948
BseLI	CCNNNNNNNGG	2 cut(s)	441, 739
BseMII	CTCAG	3 cut(s)	222, 736, 976
BseNI	ACTGG	3 cut(s)	744, 1093, 1181
BseRI	GAGGAG	2 cut(s)	165, 250
BseXI	GCAGC	2 cut(s)	316, 520
BshFI	GGCC	5 cut(s)	542, 732, 771, 1038, 1042
BsiHKAI	GWGCWC	2 cut(s)	405, 1002
BsiHKCI	CYCGRG	1 cut(s)	398
BsiSI	CCGG	4 cut(s)	93, 437, 1016, 1039
BslI	CCNNNNNNNGG	2 cut(s)	441, 739
BsmAI	GTCTC	1 cut(s)	242
BsmI	GAATGC	1 cut(s)	925
BsnI	GGCC	5 cut(s)	542, 732, 771, 1038, 1042
BsoBI	CYCGRG	1 cut(s)	398
Bsp1286I	GDGCHC	2 cut(s)	405, 1002
Bsp143I	GATC	5 cut(s)	352, 760, 816, 904, 1129
BspACI	CCGC	2 cut(s)	292, 940
BspANI	GGCC	5 cut(s)	542, 732, 771, 1038, 1042
BspCNI	CTCAG	3 cut(s)	221, 735, 975
BspPI	GGATC	1 cut(s)	899
BsrFI	RCCGGY	2 cut(s)	92, 1038
BsrI	ACTGG	3 cut(s)	744, 1093, 1181
BssAI	RCCGGY	2 cut(s)	92, 1038
BssECI	CCNNGG	3 cut(s)	41, 435, 1187
BssMI	GATC	5 cut(s)	352, 760, 816, 904, 1129
BssT1I	CCWWGG	1 cut(s)	1187
Bst2UI	CCWGG	3 cut(s)	42, 729, 1004
Bst4CI	ACNGT	2 cut(s)	603, 857
Bst6I	CTCTTC	2 cut(s)	131, 227
BstC8I	GCNNGC	3 cut(s)	882, 914, 1040
BstDEI	CTNAG	6 cut(s)	137, 184, 208, 722, 962, 1104
BstF5I	GGATG	4 cut(s)	172, 445, 514, 948
BstH2I	RGCGCY	1 cut(s)	832
BstHHI	GCGC	1 cut(s)	831
BstKTI	GATC	5 cut(s)	355, 763, 819, 907, 1132
BstMAI	GTCTC	1 cut(s)	242
BstMBI	GATC	5 cut(s)	352, 760, 816, 904, 1129
BstMWI	GCNNNNNNNGC	2 cut(s)	313, 539
BstNI	CCWGG	3 cut(s)	42, 729, 1004
BstNSI	RCATGY	2 cut(s)	597, 643
BstPAI	GACNNNNGTC	1 cut(s)	111
BstSCI	CCNGG	4 cut(s)	40, 435, 727, 1002
BstV1I	GCAGC	2 cut(s)	316, 520
BstX2I	RGATCY	1 cut(s)	816
BstYI	RGATCY	1 cut(s)	816
BsuI	GTATCC	1 cut(s)	436
BsuRI	GGCC	5 cut(s)	542, 732, 771, 1038, 1042
BtsCI	GGATG	4 cut(s)	172, 445, 514, 948
BtsIMutI	CAGTG	2 cut(s)	737, 1086
Cac8I	GCNNGC	3 cut(s)	882, 914, 1040
CaiI	CAGNNNCTG	1 cut(s)	275
CfoI	GCGC	1 cut(s)	831
Cfr10I	RCCGGY	2 cut(s)	92, 1038
Cfr13I	GGNCC	3 cut(s)	578, 742, 986
CviAII	CATG	5 cut(s)	371, 550, 594, 640, 1055
DdeI	CTNAG	6 cut(s)	137, 184, 208, 722, 962, 1104
DpnI	GATC	5 cut(s)	354, 762, 818, 906, 1131
DpnII	GATC	5 cut(s)	352, 760, 816, 904, 1129
EaeI	YGGCCR	2 cut(s)	540, 730
Eam1104I	CTCTTC	2 cut(s)	131, 227
EarI	CTCTTC	2 cut(s)	131, 227
Ecl136II	GAGCTC	2 cut(s)	403, 1000
Eco130I	CCWWGG	1 cut(s)	1187
Eco147I	AGGCCT	1 cut(s)	771
Eco24I	GRGCYC	2 cut(s)	405, 1002
Eco47I	GGWCC	3 cut(s)	578, 742, 986
Eco53kI	GAGCTC	2 cut(s)	403, 1000
Eco57I	CTGAAG	1 cut(s)	252
Eco88I	CYCGRG	1 cut(s)	398
EcoICRI	GAGCTC	2 cut(s)	403, 1000
EcoO109I	RGGNCCY	1 cut(s)	986
EcoRII	CCWGG	3 cut(s)	40, 727, 1002
EcoT14I	CCWWGG	1 cut(s)	1187
EcoT38I	GRGCYC	2 cut(s)	405, 1002
ErhI	CCWWGG	1 cut(s)	1187
FaeI	CATG	5 cut(s)	374, 553, 597, 643, 1058
FalI	AAGNNNNNCTT	4 cut(s)	164, 196, 759, 791
FatI	CATG	5 cut(s)	370, 549, 593, 639, 1054
Fnu4HI	GCNGC	2 cut(s)	305, 534
FokI	GGATG	4 cut(s)	179, 452, 521, 955
FriOI	GRGCYC	2 cut(s)	405, 1002
FseI	GGCCGGCC	1 cut(s)	1042
Fsp4HI	GCNGC	2 cut(s)	305, 534
FspBI	CTAG	2 cut(s)	477, 690
GlaI	GCGC	1 cut(s)	830
GluI	GCNGC	2 cut(s)	305, 534
GsuI	CTGGAG	1 cut(s)	303
HaeII	RGCGCY	1 cut(s)	832
HaeIII	GGCC	5 cut(s)	542, 732, 771, 1038, 1042
HapII	CCGG	4 cut(s)	93, 437, 1016, 1039
HhaI	GCGC	1 cut(s)	831
Hin1II	CATG	5 cut(s)	374, 553, 597, 643, 1058
Hin6I	GCGC	1 cut(s)	829
HinP1I	GCGC	1 cut(s)	829
HincII	GTYRAC	1 cut(s)	927
HindII	GTYRAC	1 cut(s)	927
HinfI	GANTC	1 cut(s)	1152
HpaII	CCGG	4 cut(s)	93, 437, 1016, 1039
HphI	GGTGA	2 cut(s)	397, 676
Hpy166II	GTNNAC	3 cut(s)	395, 599, 927
Hpy188I	TCNGA	5 cut(s)	149, 357, 520, 816, 965
Hpy188III	TCNNGA	6 cut(s)	210, 320, 581, 989, 1075, 1133
Hpy8I	GTNNAC	3 cut(s)	395, 599, 927
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	5 cut(s)	44, 341, 1107, 1160, 1199
HpyCH4III	ACNGT	2 cut(s)	603, 857
HpyCH4V	TGCA	4 cut(s)	304, 593, 756, 880
HpyF10VI	GCNNNNNNNGC	2 cut(s)	313, 539
HpyF3I	CTNAG	6 cut(s)	137, 184, 208, 722, 962, 1104
Hsp92II	CATG	5 cut(s)	374, 553, 597, 643, 1058
HspAI	GCGC	1 cut(s)	829
KroI	GCCGGC	1 cut(s)	1038
KroNI	GCCGGC	1 cut(s)	1040
Kzo9I	GATC	5 cut(s)	352, 760, 816, 904, 1129
LmnI	GCTCC	1 cut(s)	1005
Lsp1109I	GCAGC	2 cut(s)	316, 520
LweI	GCATC	2 cut(s)	126, 1068
MaeI	CTAG	2 cut(s)	477, 690
MaeIII	GTNAC	5 cut(s)	104, 376, 466, 682, 1060
MalI	GATC	5 cut(s)	354, 762, 818, 906, 1131
MboI	GATC	5 cut(s)	352, 760, 816, 904, 1129
MboII	GAAGA	8 cut(s)	118, 244, 258, 600, 861, 907, 1214, 1228
MflI	RGATCY	1 cut(s)	816
MhlI	GDGCHC	2 cut(s)	405, 1002
MlsI	TGGCCA	1 cut(s)	732
MluCI	AATT	4 cut(s)	76, 299, 715, 1022
MluNI	TGGCCA	1 cut(s)	732
MlyI	GAGTC	1 cut(s)	1161
Mox20I	TGGCCA	1 cut(s)	732
MroNI	GCCGGC	1 cut(s)	1038
MroXI	GAANNNNTTC	1 cut(s)	951
MscI	TGGCCA	1 cut(s)	732
MseI	TTAA	3 cut(s)	242, 527, 1125
MslI	CAYNNNNRTG	1 cut(s)	18
Msp20I	TGGCCA	1 cut(s)	732
MspI	CCGG	4 cut(s)	93, 437, 1016, 1039
MspR9I	CCNGG	4 cut(s)	42, 437, 729, 1004
Mva1269I	GAATGC	1 cut(s)	925
MvaI	CCWGG	3 cut(s)	42, 729, 1004
MwoI	GCNNNNNNNGC	2 cut(s)	313, 539
NaeI	GCCGGC	1 cut(s)	1040
NciI	CCSGG	1 cut(s)	437
NdeII	GATC	5 cut(s)	352, 760, 816, 904, 1129
NgoMIV	GCCGGC	1 cut(s)	1038
NlaIII	CATG	5 cut(s)	374, 553, 597, 643, 1058
NmuCI	GTSAC	4 cut(s)	104, 376, 466, 682
NspI	RCATGY	2 cut(s)	597, 643
PaeR7I	CTCGAG	1 cut(s)	398
PceI	AGGCCT	1 cut(s)	771
PciI	ACATGT	1 cut(s)	639
PctI	GAATGC	1 cut(s)	925
PdiI	GCCGGC	1 cut(s)	1040
PdmI	GAANNNNTTC	1 cut(s)	951
PflMI	CCANNNNNTGG	1 cut(s)	739
PkrI	GCNGC	2 cut(s)	306, 535
PleI	GAGTC	1 cut(s)	1160
PpsI	GAGTC	1 cut(s)	1160
PpuMI	RGGWCCY	1 cut(s)	986
PscI	ACATGT	1 cut(s)	639
PshAI	GACNNNNGTC	1 cut(s)	111
PsiI	TTATAA	1 cut(s)	807
Psp124BI	GAGCTC	2 cut(s)	405, 1002
Psp5II	RGGWCCY	1 cut(s)	986
Psp6I	CCWGG	3 cut(s)	40, 727, 1002
PspGI	CCWGG	3 cut(s)	40, 727, 1002
PspPI	GGNCC	3 cut(s)	578, 742, 986
PspPPI	RGGWCCY	1 cut(s)	986
PspXI	VCTCGAGB	1 cut(s)	398
PstNI	CAGNNNCTG	1 cut(s)	275
PsuI	RGATCY	1 cut(s)	816
RigI	GGCCGGCC	1 cut(s)	1042
RseI	CAYNNNNRTG	1 cut(s)	18
SacI	GAGCTC	2 cut(s)	405, 1002
SaqAI	TTAA	3 cut(s)	242, 527, 1125
SatI	GCNGC	2 cut(s)	305, 534
Sau3AI	GATC	5 cut(s)	352, 760, 816, 904, 1129
Sau96I	GGNCC	3 cut(s)	578, 742, 986
SchI	GAGTC	1 cut(s)	1161
ScrFI	CCNGG	4 cut(s)	42, 437, 729, 1004
SduI	GDGCHC	2 cut(s)	405, 1002
SfaNI	GCATC	2 cut(s)	126, 1068
Sfr274I	CTCGAG	1 cut(s)	398
SinI	GGWCC	3 cut(s)	578, 742, 986
SlaI	CTCGAG	1 cut(s)	398
SmiMI	CAYNNNNRTG	1 cut(s)	18
SmlI	CTYRAG	3 cut(s)	335, 398, 1073
SmoI	CTYRAG	3 cut(s)	335, 398, 1073
Sse9I	AATT	4 cut(s)	76, 299, 715, 1022
SseBI	AGGCCT	1 cut(s)	771
SsiI	CCGC	2 cut(s)	292, 940
SspI	AATATT	1 cut(s)	811
SspMI	CTAG	2 cut(s)	477, 690
SstI	GAGCTC	2 cut(s)	405, 1002
StuI	AGGCCT	1 cut(s)	771
StyD4I	CCNGG	4 cut(s)	40, 435, 727, 1002
StyI	CCWWGG	1 cut(s)	1187
TaaI	ACNGT	2 cut(s)	603, 857
TaqI	TCGA	1 cut(s)	399
TasI	AATT	4 cut(s)	76, 299, 715, 1022
Tru1I	TTAA	3 cut(s)	242, 527, 1125
Tru9I	TTAA	3 cut(s)	242, 527, 1125
TscAI	CASTG	2 cut(s)	744, 1093
TseFI	GTSAC	4 cut(s)	104, 376, 466, 682
TseI	GCWGC	2 cut(s)	304, 533
Tsp45I	GTSAC	4 cut(s)	104, 376, 466, 682
TspDTI	ATGAA	5 cut(s)	312, 600, 635, 862, 1179
TspGWI	ACGGA	1 cut(s)	179
TspRI	CASTG	2 cut(s)	744, 1093
Van91I	CCANNNNNTGG	1 cut(s)	739
VpaK11BI	GGWCC	3 cut(s)	578, 742, 986
XceI	RCATGY	2 cut(s)	597, 643
XhoI	CTCGAG	1 cut(s)	398
XmnI	GAANNNNTTC	1 cut(s)	951
XspI	CTAG	2 cut(s)	477, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.