Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0004386

Physical Location & Seq

Genomic Coordinates Forward (+)

16285672 .. 16287933

Gene Structure 2262 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG184600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGGTACTTGGAAGTTTGACGCATGTATCAACGGATGGGAAGTGGTGCTTCTTAGTGTTTTGGGTGGTTGGGAACCCAGGAACAAGGTGGGATTTGTTGAAGAGGAGCCTCCAAAGCCTCCAGATGTGTTCCTTCTCAAGTTCTGTTGTTATGATCGGAGAGGGATTTTACATGATGTGACAGAGGTTCTATGTGAACTCGAGCTCACCATAAAGAAAGTCAAGGTATCCACCACCCCGGATGGGAAAGTGATTGACCTGTTTTTCGTCACAGACACTAGGGAACTTCTGCATACAAATAAGAGAAAGGATGAGGTATCTGACCACTTAAAAGCTGCTACGGGCAATGCCATGATAAGTTTTGATATTGAAATGGTTGGTCCAGAGATTACTGCATGTTCACAGTCATCTTCATTTCTCCCATCTGTTCTTATGGAGGACATGTTTCATTTGGAAATGCCTGATGAACTCCCAAGTGGAGTAGTCACCTCTAGCTGTGATTCTGTGAATATGGACAATTCACTAAGTCCTGGCCACACACTGGTCCAAATCATTTGCAAAGATCACAAAGGCCTCCTTTATGATATAATGAGAACTCTAAAGGATTATAATATTCAGATCTCTTATGGGCGCTTCTCTACAAAACAAAGAAGAAACTGTGAGATTGACTTGTTCATTGTGCAAGCTGATGGAAAGAAGATTGTTGATCCAAGCAAGCAGAATGCGTTGACATCTCGTTTGCGGATGGAACTACTTCGTCCTCTCAGAGTAGCTGTTGTTAGCAAAGGTCCTGATACAGAGCTCCTGGTTGCTAATCCGGTGGAATTATCTGGGAAAGGCCGGCCTCTTGTTTTCCATGATGTAACCCTTGCTCTCAAGATGCTGGACACTGGCATATTTTCAGCTAAGATTGGAAGGCATTTAGTTAAAGATCGGGAATGGGAAGTTTATAGAGTCTTGCTTGATGAAGGAGATGGCTTGCCAGTTCCAAGGAACAAGATTGAAGAAGGAGTTTGGAAGATGTTGATGGGTTGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT

Protein Analysis

346

Amino Acids

39.03

Weight (kDa)

5.61

Isoelectric Point (pI)

41.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACT	PF01842	46 - 101	9e-06	ACT domain
ACT_ACR9_3rd	PF24931	168 - 265	3.3e-50	ACR9-like, ACT-like domain
ACT_ACR9_C	PF24926	266 - 344	9.8e-38	ACT domain-containing protein ACR9, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36840
fragaria_vesca	FvH4_6g16600 FvH4_6g16600 FvH4_7g18540
malus_domestica	MD01G1101800.v1.1 MD04G1090700.v1.1 MD12G1108700.v1.1
prunus_persica	Prupe.2G207000_v2.0.a1 Prupe.7G127300_v2.0.a1
pyrus_communis	pycom01g12840 pycom04g08590 pycom12g10900
rosa_chinensis	RchiOBHm_Chr1g0362321 RchiOBHm_Chr2g0171731 RchiOBHm_Chr3g0470541
rosa_laevigata	RLG00000024260 RLG00000027651
rosa_multiflora	Rmu_sc0002115.1_g000012 Rmu_sc0020251.1_g000001
rosa_roxburghii	Rroxscaffold_4G00294250 Rroxscaffold_6G00410740
rosa_rugosa	Rorug01G0297600 Rorug01G0297700 Rorug03G0109900
rosa_samantha	Rh1AG306300 Rh1DG300000 Rh3AG160000 Rh3BG184600 Rh3CG175100 Rh3DG190100
rosa_wichuraiana	Rw1G027190 Rw3G015140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	609
AccB7I	CCANNNNNTGG	1 cut(s)	541
AciI	CCGC	1 cut(s)	742
AclWI	GGATC	1 cut(s)	701
AcoI	YGGCCR	1 cut(s)	532
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	2 cut(s)	243, 541
AflIII	ACRYGT	1 cut(s)	441
AgsI	TTSAA	3 cut(s)	101, 371, 1004
AjnI	CCWGG	3 cut(s)	77, 529, 804
AluBI	AGCT	7 cut(s)	205, 335, 495, 686, 773, 802, 905
AluI	AGCT	7 cut(s)	205, 335, 495, 686, 773, 802, 905
Alw21I	GWGCWC	2 cut(s)	207, 804
AlwI	GGATC	1 cut(s)	701
Ama87I	CYCGRG	1 cut(s)	200
AoxI	GGCC	4 cut(s)	532, 571, 838, 842
ApeKI	GCWGC	1 cut(s)	335
ArsI	GACNNNNNNTTYG	4 cut(s)	248, 280, 721, 753
Asp700I	GAANNNNTTC	1 cut(s)	753
AspLEI	GCGC	1 cut(s)	633
AspS9I	GGNCC	3 cut(s)	380, 544, 788
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	2 cut(s)	199, 478
AvaI	CYCGRG	1 cut(s)	200
AvaII	GGWCC	3 cut(s)	380, 544, 788
BaeI	ACNNNNGTAYC	2 cut(s)	10, 43
BalI	TGGCCA	1 cut(s)	534
BanII	GRGCYC	2 cut(s)	207, 804
Bbv12I	GWGCWC	2 cut(s)	207, 804
BbvI	GCAGC	1 cut(s)	322
BccI	CCATC	7 cut(s)	30, 236, 430, 683, 739, 968, 1021
BciT130I	CCWGG	3 cut(s)	79, 531, 806
BciVI	GTATCC	1 cut(s)	238
BcnI	CCSGG	1 cut(s)	239
BfaI	CTAG	2 cut(s)	279, 492
BfoI	RGCGCY	1 cut(s)	634
BfuI	GTATCC	1 cut(s)	238
BglII	AGATCT	1 cut(s)	618
BisI	GCNGC	1 cut(s)	336
BlsI	GCNGC	1 cut(s)	337
Bme1390I	CCNGG	4 cut(s)	79, 239, 531, 806
Bme18I	GGWCC	3 cut(s)	380, 544, 788
BmeT110I	CYCGRG	1 cut(s)	200
BmgT120I	GGNCC	3 cut(s)	380, 544, 788
BmiI	GGNNCC	2 cut(s)	75, 108
BmrFI	CCNGG	4 cut(s)	79, 239, 531, 806
BmsI	GCATC	1 cut(s)	870
BpmI	CTGGAG	1 cut(s)	105
BpuEI	CTTGAG	2 cut(s)	122, 860
BpuMI	CCSGG	1 cut(s)	239
BsaJI	CCNNGG	3 cut(s)	77, 237, 989
BsaWI	WCCGGW	1 cut(s)	817
BsaXI	ACNNNNNCTCC	2 cut(s)	428, 458
Bsc4I	CCNNNNNNNGG	2 cut(s)	243, 541
Bse118I	RCCGGY	1 cut(s)	840
Bse1I	ACTGG	3 cut(s)	546, 895, 983
Bse3DI	GCAATG	1 cut(s)	352
BseBI	CCWGG	3 cut(s)	79, 531, 806
BseDI	CCNNGG	3 cut(s)	77, 237, 989
BseGI	GGATG	4 cut(s)	41, 247, 316, 750
BseLI	CCNNNNNNNGG	2 cut(s)	243, 541
BseMI	GCAATG	1 cut(s)	352
BseMII	CTCAG	1 cut(s)	778
BseNI	ACTGG	3 cut(s)	546, 895, 983
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	1 cut(s)	322
BshFI	GGCC	4 cut(s)	534, 573, 840, 844
BsiHKAI	GWGCWC	2 cut(s)	207, 804
BsiHKCI	CYCGRG	1 cut(s)	200
BsiSI	CCGG	3 cut(s)	239, 818, 841
BslI	CCNNNNNNNGG	2 cut(s)	243, 541
BsmI	GAATGC	1 cut(s)	727
BsnI	GGCC	4 cut(s)	534, 573, 840, 844
BsoBI	CYCGRG	1 cut(s)	200
Bsp1286I	GDGCHC	2 cut(s)	207, 804
Bsp143I	GATC	5 cut(s)	154, 562, 618, 706, 931
BspACI	CCGC	1 cut(s)	742
BspANI	GGCC	4 cut(s)	534, 573, 840, 844
BspCNI	CTCAG	1 cut(s)	777
BspLI	GGNNCC	2 cut(s)	75, 108
BspPI	GGATC	1 cut(s)	701
BsrDI	GCAATG	1 cut(s)	352
BsrFI	RCCGGY	1 cut(s)	840
BsrI	ACTGG	3 cut(s)	546, 895, 983
BssAI	RCCGGY	1 cut(s)	840
BssECI	CCNNGG	3 cut(s)	77, 237, 989
BssMI	GATC	5 cut(s)	154, 562, 618, 706, 931
BssT1I	CCWWGG	1 cut(s)	989
Bst2UI	CCWGG	3 cut(s)	79, 531, 806
Bst4CI	ACNGT	2 cut(s)	405, 659
Bst6I	CTCTTC	1 cut(s)	96
BstC8I	GCNNGC	4 cut(s)	684, 716, 842, 980
BstDEI	CTNAG	4 cut(s)	53, 524, 764, 906
BstF5I	GGATG	4 cut(s)	41, 247, 316, 750
BstH2I	RGCGCY	1 cut(s)	634
BstHHI	GCGC	1 cut(s)	633
BstKTI	GATC	5 cut(s)	157, 565, 621, 709, 934
BstMBI	GATC	5 cut(s)	154, 562, 618, 706, 931
BstMWI	GCNNNNNNNGC	1 cut(s)	115
BstNI	CCWGG	3 cut(s)	79, 531, 806
BstNSI	RCATGY	3 cut(s)	27, 399, 445
BstSCI	CCNGG	4 cut(s)	77, 237, 529, 804
BstV1I	GCAGC	1 cut(s)	322
BstX2I	RGATCY	1 cut(s)	618
BstYI	RGATCY	1 cut(s)	618
BsuI	GTATCC	1 cut(s)	238
BsuRI	GGCC	4 cut(s)	534, 573, 840, 844
BtsCI	GGATG	4 cut(s)	41, 247, 316, 750
BtsIMutI	CAGTG	2 cut(s)	539, 888
Cac8I	GCNNGC	4 cut(s)	684, 716, 842, 980
CfoI	GCGC	1 cut(s)	633
Cfr10I	RCCGGY	1 cut(s)	840
Cfr13I	GGNCC	3 cut(s)	380, 544, 788
CseI	GACGC	1 cut(s)	29
Csp6I	GTAC	1 cut(s)	6
CviAII	CATG	6 cut(s)	24, 173, 352, 396, 442, 857
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	4 cut(s)	53, 524, 764, 906
DpnI	GATC	5 cut(s)	156, 564, 620, 708, 933
DpnII	GATC	5 cut(s)	154, 562, 618, 706, 931
EaeI	YGGCCR	1 cut(s)	532
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Ecl136II	GAGCTC	2 cut(s)	205, 802
Eco130I	CCWWGG	1 cut(s)	989
Eco147I	AGGCCT	1 cut(s)	573
Eco24I	GRGCYC	2 cut(s)	207, 804
Eco47I	GGWCC	3 cut(s)	380, 544, 788
Eco53kI	GAGCTC	2 cut(s)	205, 802
Eco88I	CYCGRG	1 cut(s)	200
EcoICRI	GAGCTC	2 cut(s)	205, 802
EcoO109I	RGGNCCY	1 cut(s)	788
EcoRII	CCWGG	3 cut(s)	77, 529, 804
EcoT14I	CCWWGG	1 cut(s)	989
EcoT38I	GRGCYC	2 cut(s)	207, 804
ErhI	CCWWGG	1 cut(s)	989
FaeI	CATG	6 cut(s)	27, 176, 355, 399, 445, 860
FalI	AAGNNNNNCTT	4 cut(s)	33, 65, 561, 593
FatI	CATG	6 cut(s)	23, 172, 351, 395, 441, 856
Fnu4HI	GCNGC	1 cut(s)	336
FokI	GGATG	4 cut(s)	48, 254, 323, 757
FriOI	GRGCYC	2 cut(s)	207, 804
FseI	GGCCGGCC	1 cut(s)	844
Fsp4HI	GCNGC	1 cut(s)	336
FspBI	CTAG	2 cut(s)	279, 492
GlaI	GCGC	1 cut(s)	632
GluI	GCNGC	1 cut(s)	336
GsuI	CTGGAG	1 cut(s)	105
HaeII	RGCGCY	1 cut(s)	634
HaeIII	GGCC	4 cut(s)	534, 573, 840, 844
HapII	CCGG	3 cut(s)	239, 818, 841
HgaI	GACGC	1 cut(s)	29
HhaI	GCGC	1 cut(s)	633
Hin1II	CATG	6 cut(s)	27, 176, 355, 399, 445, 860
Hin6I	GCGC	1 cut(s)	631
HinP1I	GCGC	1 cut(s)	631
HincII	GTYRAC	1 cut(s)	729
HindII	GTYRAC	1 cut(s)	729
HinfI	GANTC	2 cut(s)	500, 954
HpaII	CCGG	3 cut(s)	239, 818, 841
HphI	GGTGA	2 cut(s)	199, 478
Hpy166II	GTNNAC	3 cut(s)	197, 401, 729
Hpy188I	TCNGA	4 cut(s)	159, 322, 618, 767
Hpy188III	TCNNGA	5 cut(s)	122, 383, 791, 877, 935
Hpy8I	GTNNAC	3 cut(s)	197, 401, 729
HpyAV	CCTTC	4 cut(s)	143, 909, 962, 1001
HpyCH4III	ACNGT	2 cut(s)	405, 659
HpyCH4V	TGCA	4 cut(s)	292, 395, 558, 682
HpyF10VI	GCNNNNNNNGC	1 cut(s)	115
HpyF3I	CTNAG	4 cut(s)	53, 524, 764, 906
Hsp92II	CATG	6 cut(s)	27, 176, 355, 399, 445, 860
HspAI	GCGC	1 cut(s)	631
KroI	GCCGGC	1 cut(s)	840
KroNI	GCCGGC	1 cut(s)	842
Kzo9I	GATC	5 cut(s)	154, 562, 618, 706, 931
LmnI	GCTCC	2 cut(s)	106, 807
Lsp1109I	GCAGC	1 cut(s)	322
LweI	GCATC	1 cut(s)	870
MaeI	CTAG	2 cut(s)	279, 492
MaeIII	GTNAC	4 cut(s)	178, 268, 484, 862
MalI	GATC	5 cut(s)	156, 564, 620, 708, 933
MboI	GATC	5 cut(s)	154, 562, 618, 706, 931
MboII	GAAGA	6 cut(s)	113, 402, 663, 709, 1016, 1030
MflI	RGATCY	1 cut(s)	618
MhlI	GDGCHC	2 cut(s)	207, 804
MlsI	TGGCCA	1 cut(s)	534
MluCI	AATT	2 cut(s)	517, 824
MluNI	TGGCCA	1 cut(s)	534
MlyI	GAGTC	1 cut(s)	963
Mox20I	TGGCCA	1 cut(s)	534
MroNI	GCCGGC	1 cut(s)	840
MroXI	GAANNNNTTC	1 cut(s)	753
MscI	TGGCCA	1 cut(s)	534
MseI	TTAA	2 cut(s)	329, 927
Msp20I	TGGCCA	1 cut(s)	534
MspI	CCGG	3 cut(s)	239, 818, 841
MspR9I	CCNGG	4 cut(s)	79, 239, 531, 806
Mva1269I	GAATGC	1 cut(s)	727
MvaI	CCWGG	3 cut(s)	79, 531, 806
MwoI	GCNNNNNNNGC	1 cut(s)	115
NaeI	GCCGGC	1 cut(s)	842
NciI	CCSGG	1 cut(s)	239
NdeII	GATC	5 cut(s)	154, 562, 618, 706, 931
NgoMIV	GCCGGC	1 cut(s)	840
NlaIII	CATG	6 cut(s)	27, 176, 355, 399, 445, 860
NlaIV	GGNNCC	2 cut(s)	75, 108
NmuCI	GTSAC	3 cut(s)	178, 268, 484
NspI	RCATGY	3 cut(s)	27, 399, 445
PaeR7I	CTCGAG	1 cut(s)	200
PceI	AGGCCT	1 cut(s)	573
PciI	ACATGT	1 cut(s)	441
PctI	GAATGC	1 cut(s)	727
PdiI	GCCGGC	1 cut(s)	842
PdmI	GAANNNNTTC	1 cut(s)	753
PfeI	GAWTC	1 cut(s)	500
PflMI	CCANNNNNTGG	1 cut(s)	541
PkrI	GCNGC	1 cut(s)	337
PleI	GAGTC	1 cut(s)	962
PpsI	GAGTC	1 cut(s)	962
PpuMI	RGGWCCY	1 cut(s)	788
PscI	ACATGT	1 cut(s)	441
PsiI	TTATAA	1 cut(s)	609
Psp124BI	GAGCTC	2 cut(s)	207, 804
Psp5II	RGGWCCY	1 cut(s)	788
Psp6I	CCWGG	3 cut(s)	77, 529, 804
PspGI	CCWGG	3 cut(s)	77, 529, 804
PspN4I	GGNNCC	2 cut(s)	75, 108
PspPI	GGNCC	3 cut(s)	380, 544, 788
PspPPI	RGGWCCY	1 cut(s)	788
PspXI	VCTCGAGB	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	618
RigI	GGCCGGCC	1 cut(s)	844
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
SacI	GAGCTC	2 cut(s)	207, 804
SaqAI	TTAA	2 cut(s)	329, 927
SatI	GCNGC	1 cut(s)	336
Sau3AI	GATC	5 cut(s)	154, 562, 618, 706, 931
Sau96I	GGNCC	3 cut(s)	380, 544, 788
SchI	GAGTC	1 cut(s)	963
ScrFI	CCNGG	4 cut(s)	79, 239, 531, 806
SduI	GDGCHC	2 cut(s)	207, 804
SfaNI	GCATC	1 cut(s)	870
Sfr274I	CTCGAG	1 cut(s)	200
SinI	GGWCC	3 cut(s)	380, 544, 788
SlaI	CTCGAG	1 cut(s)	200
SmlI	CTYRAG	3 cut(s)	137, 200, 875
SmoI	CTYRAG	3 cut(s)	137, 200, 875
Sse9I	AATT	2 cut(s)	517, 824
SseBI	AGGCCT	1 cut(s)	573
SsiI	CCGC	1 cut(s)	742
SspI	AATATT	1 cut(s)	613
SspMI	CTAG	2 cut(s)	279, 492
SstI	GAGCTC	2 cut(s)	207, 804
StuI	AGGCCT	1 cut(s)	573
StyD4I	CCNGG	4 cut(s)	77, 237, 529, 804
StyI	CCWWGG	1 cut(s)	989
TaaI	ACNGT	2 cut(s)	405, 659
TaqI	TCGA	1 cut(s)	201
TasI	AATT	2 cut(s)	517, 824
TfiI	GAWTC	1 cut(s)	500
Tru1I	TTAA	2 cut(s)	329, 927
Tru9I	TTAA	2 cut(s)	329, 927
TscAI	CASTG	2 cut(s)	546, 895
TseFI	GTSAC	3 cut(s)	178, 268, 484
TseI	GCWGC	1 cut(s)	335
Tsp45I	GTSAC	3 cut(s)	178, 268, 484
TspDTI	ATGAA	5 cut(s)	402, 437, 480, 664, 981
TspGWI	ACGGA	1 cut(s)	48
TspRI	CASTG	2 cut(s)	546, 895
Van91I	CCANNNNNTGG	1 cut(s)	541
VpaK11BI	GGWCC	3 cut(s)	380, 544, 788
XceI	RCATGY	3 cut(s)	27, 399, 445
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XhoI	CTCGAG	1 cut(s)	200
XmnI	GAANNNNTTC	1 cut(s)	753
XspI	CTAG	2 cut(s)	279, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.