Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004386

Physical Location & Seq

Genomic Coordinates Reverse (-)

53943111 .. 53947436

Gene Structure 4326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG306300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGGCATTTTGCATGAGGACATGGTGATAATTAGCCAGGCAGAGAAGGCTGGAGATCCTACTGTGATCACTGTGAATTGCCCTGACAAAACTGGGCTAGGCTGTGATCTGTGCAGGGTCATATTGCTCTTTGGGATAAGCATTTGCAGAGGAGATGTTTCGACGGATGGAAAGTGGTGCTACGTAGTGTTTTGGGTGGTGGGAAAACCGGAAACAAGTTGGAATTTGTTGACAAAGAGATTGTTAGAAGTGTGTCCCTCACATTTTACAACTTCTGGAATATACTATTACCGGCCGGAAAACCAGCAGCCTAAGCCATTAGATGTGTTCCTTTTGAAATTCTGGTGCTCTTATGAACAGGAAGGCCTATTGCATGATGTCACTAAGGTTCTTTGTGAGCTTGAGCTCACAATAGAGAGAGTGAAGGTGTCTACTACCCCAGATGGGAAAGTGATGGACCTTTTTTTTGTTACAGATACCAGAGAACTGCTGCATACAAAAAGAAGACAAGATGAAACAAGTAATCGCCTGAAAGCTGTCTTGGGGAATGTCTTGTTGGGTTGTGAAATTGAATTGGCTGAGTCAAAAGTTACCGCATGTTCACAGGGTTCTCCTTATCTTCCTTCTGTAATCACTGAAGAAATGTTAAGTTTAGAGCGGACCAATGGACGCCTAAAAAGACCTGTTGCCTCCATTCCCATTTCAATAACAGTGGACAATAAGCTCAGCCCCTCTCACACACTAGTTCAAATATTCTGTCCGGATCATAAAGGTCTAGTGTATGACATCATGAGAACACTAAAGGATTATGACATTCAGGTACATCTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

277

Amino Acids

31.3

Weight (kDa)

5.83

Isoelectric Point (pI)

33.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACR10_N	PF24914	11 - 86	5.7e-39	ACT domain-containing protein ACR10, N-terminal
ACT_ACR9_3rd	PF24931	235 - 274	2.3e-18	ACR9-like, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36840
fragaria_vesca	FvH4_6g16600 FvH4_6g16600 FvH4_7g18540
malus_domestica	MD01G1101800.v1.1 MD04G1090700.v1.1 MD12G1108700.v1.1
prunus_persica	Prupe.2G207000_v2.0.a1 Prupe.7G127300_v2.0.a1
pyrus_communis	pycom01g12840 pycom04g08590 pycom12g10900
rosa_chinensis	RchiOBHm_Chr1g0362321 RchiOBHm_Chr2g0171731 RchiOBHm_Chr3g0470541
rosa_laevigata	RLG00000024260 RLG00000027651
rosa_multiflora	Rmu_sc0002115.1_g000012 Rmu_sc0020251.1_g000001
rosa_roxburghii	Rroxscaffold_4G00294250 Rroxscaffold_6G00410740
rosa_rugosa	Rorug01G0297600 Rorug01G0297700 Rorug03G0109900
rosa_samantha	Rh1AG306300 Rh1DG300000 Rh3AG160000 Rh3BG184600 Rh3CG175100 Rh3DG190100
rosa_wichuraiana	Rw1G027190 Rw3G015140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	658
AccI	GTMKAC	1 cut(s)	431
AccIII	TCCGGA	1 cut(s)	760
AciI	CCGC	2 cut(s)	594, 658
AclWI	GGATC	2 cut(s)	50, 771
AcoI	YGGCCR	1 cut(s)	293
AcsI	RAATTY	2 cut(s)	223, 338
AcuI	CTGAAG	1 cut(s)	657
AcyI	GRCGYC	1 cut(s)	670
AfaI	GTAC	1 cut(s)	822
AfiI	CCNNNNNNNGG	1 cut(s)	444
AgsI	TTSAA	4 cut(s)	337, 572, 705, 749
AhlI	ACTAGT	1 cut(s)	742
AjnI	CCWGG	1 cut(s)	36
AjuI	GAANNNNNNNTTGG	4 cut(s)	524, 539, 556, 571
AluBI	AGCT	4 cut(s)	400, 406, 536, 724
AluI	AGCT	4 cut(s)	400, 406, 536, 724
Alw21I	GWGCWC	2 cut(s)	350, 408
AlwI	GGATC	2 cut(s)	50, 771
Aor13HI	TCCGGA	1 cut(s)	760
AoxI	GGCC	2 cut(s)	293, 364
ApeKI	GCWGC	2 cut(s)	307, 490
ApoI	RAATTY	2 cut(s)	223, 338
ArsI	GACNNNNNNTTYG	4 cut(s)	449, 481, 742, 774
AspS9I	GGNCC	2 cut(s)	457, 660
AsuHPI	GGTGA	1 cut(s)	37
AvaII	GGWCC	2 cut(s)	457, 660
BanII	GRGCYC	1 cut(s)	408
BbsI	GAAGAC	1 cut(s)	511
Bbv12I	GWGCWC	2 cut(s)	350, 408
BbvI	GCAGC	2 cut(s)	319, 477
BccI	CCATC	3 cut(s)	161, 437, 448
BciT130I	CCWGG	1 cut(s)	38
BclI	TGATCA	1 cut(s)	66
BcuI	ACTAGT	1 cut(s)	742
BfaI	CTAG	3 cut(s)	98, 743, 776
BisI	GCNGC	2 cut(s)	308, 491
BlpI	GCTNAGC	1 cut(s)	725
BlsI	GCNGC	2 cut(s)	309, 492
Bme1390I	CCNGG	1 cut(s)	38
Bme18I	GGWCC	2 cut(s)	457, 660
BmgT120I	GGNCC	2 cut(s)	457, 660
BmrFI	CCNGG	1 cut(s)	38
BmrI	ACTGGG	1 cut(s)	102
BmuI	ACTGGG	1 cut(s)	102
BpiI	GAAGAC	1 cut(s)	511
BpmI	CTGGAG	1 cut(s)	72
Bpu10I	CCTNAGC	1 cut(s)	312
Bpu1102I	GCTNAGC	1 cut(s)	725
BpuEI	CTTGAG	1 cut(s)	422
BsaAI	YACGTR	1 cut(s)	184
BsaHI	GRCGYC	1 cut(s)	670
BsaWI	WCCGGW	2 cut(s)	208, 760
Bsc4I	CCNNNNNNNGG	1 cut(s)	444
Bse118I	RCCGGY	1 cut(s)	291
Bse1I	ACTGG	1 cut(s)	97
BseAI	TCCGGA	1 cut(s)	760
BseBI	CCWGG	1 cut(s)	38
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	1 cut(s)	444
BseMII	CTCAG	2 cut(s)	570, 739
BseNI	ACTGG	1 cut(s)	97
BseRI	GAGGAG	1 cut(s)	165
BseX3I	CGGCCG	1 cut(s)	293
BseXI	GCAGC	2 cut(s)	319, 477
BsgI	GTGCAG	1 cut(s)	133
Bsh1285I	CGRYCG	1 cut(s)	296
BshFI	GGCC	2 cut(s)	295, 366
BsiEI	CGRYCG	1 cut(s)	296
BsiHKAI	GWGCWC	2 cut(s)	350, 408
BsiSI	CCGG	4 cut(s)	209, 292, 296, 761
BslFI	GGGAC	1 cut(s)	240
BslI	CCNNNNNNNGG	1 cut(s)	444
BsmFI	GGGAC	1 cut(s)	240
BsnI	GGCC	2 cut(s)	295, 366
Bsp1286I	GDGCHC	2 cut(s)	350, 408
Bsp13I	TCCGGA	1 cut(s)	760
Bsp143I	GATC	4 cut(s)	55, 66, 106, 763
Bsp1720I	GCTNAGC	1 cut(s)	725
BspACI	CCGC	2 cut(s)	594, 658
BspANI	GGCC	2 cut(s)	295, 366
BspCNI	CTCAG	2 cut(s)	571, 738
BspEI	TCCGGA	1 cut(s)	760
BspHI	TCATGA	1 cut(s)	789
BspPI	GGATC	2 cut(s)	50, 771
BsrBI	CCGCTC	1 cut(s)	658
BsrFI	RCCGGY	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	97
BssAI	RCCGGY	1 cut(s)	291
BssMI	GATC	4 cut(s)	55, 66, 106, 763
BssNI	GRCGYC	1 cut(s)	670
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	3 cut(s)	64, 73, 712
BstACI	GRCGYC	1 cut(s)	670
BstBAI	YACGTR	1 cut(s)	184
BstDEI	CTNAG	4 cut(s)	312, 384, 579, 725
BstF5I	GGATG	1 cut(s)	172
BstKTI	GATC	4 cut(s)	58, 69, 109, 766
BstMBI	GATC	4 cut(s)	55, 66, 106, 763
BstMCI	CGRYCG	1 cut(s)	296
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 313
BstNI	CCWGG	1 cut(s)	38
BstNSI	RCATGY	1 cut(s)	600
BstSCI	CCNGG	1 cut(s)	36
BstSNI	TACGTA	1 cut(s)	184
BstV1I	GCAGC	2 cut(s)	319, 477
BstV2I	GAAGAC	1 cut(s)	511
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BstZI	CGGCCG	1 cut(s)	293
BsuRI	GGCC	2 cut(s)	295, 366
BtsCI	GGATG	1 cut(s)	172
BtsIMutI	CAGTG	3 cut(s)	69, 633, 717
CciI	TCATGA	1 cut(s)	789
Cfr10I	RCCGGY	1 cut(s)	291
Cfr13I	GGNCC	2 cut(s)	457, 660
CseI	GACGC	1 cut(s)	678
Csp6I	GTAC	1 cut(s)	821
CspCI	CAANNNNNGTGG	2 cut(s)	693, 728
CviAII	CATG	5 cut(s)	14, 22, 374, 597, 790
CviQI	GTAC	1 cut(s)	821
DdeI	CTNAG	4 cut(s)	312, 384, 579, 725
DpnI	GATC	4 cut(s)	57, 68, 108, 765
DpnII	GATC	4 cut(s)	55, 66, 106, 763
EaeI	YGGCCR	1 cut(s)	293
EagI	CGGCCG	1 cut(s)	293
Ecl136II	GAGCTC	1 cut(s)	406
EclXI	CGGCCG	1 cut(s)	293
Eco105I	TACGTA	1 cut(s)	184
Eco147I	AGGCCT	1 cut(s)	366
Eco24I	GRGCYC	1 cut(s)	408
Eco47I	GGWCC	2 cut(s)	457, 660
Eco52I	CGGCCG	1 cut(s)	293
Eco53kI	GAGCTC	1 cut(s)	406
Eco57I	CTGAAG	1 cut(s)	657
EcoICRI	GAGCTC	1 cut(s)	406
EcoRII	CCWGG	1 cut(s)	36
EcoT38I	GRGCYC	1 cut(s)	408
FaeI	CATG	5 cut(s)	17, 25, 377, 600, 793
FaqI	GGGAC	1 cut(s)	240
FatI	CATG	5 cut(s)	13, 21, 373, 596, 789
FbaI	TGATCA	1 cut(s)	66
FblI	GTMKAC	1 cut(s)	431
Fnu4HI	GCNGC	2 cut(s)	308, 491
FokI	GGATG	1 cut(s)	179
FriOI	GRGCYC	1 cut(s)	408
Fsp4HI	GCNGC	2 cut(s)	308, 491
FspBI	CTAG	3 cut(s)	98, 743, 776
GluI	GCNGC	2 cut(s)	308, 491
GsuI	CTGGAG	1 cut(s)	72
HaeIII	GGCC	2 cut(s)	295, 366
HapII	CCGG	4 cut(s)	209, 292, 296, 761
HgaI	GACGC	1 cut(s)	678
Hin1I	GRCGYC	1 cut(s)	670
Hin1II	CATG	5 cut(s)	17, 25, 377, 600, 793
HincII	GTYRAC	1 cut(s)	231
HindII	GTYRAC	1 cut(s)	231
HinfI	GANTC	1 cut(s)	581
HpaII	CCGG	4 cut(s)	209, 292, 296, 761
HphI	GGTGA	1 cut(s)	37
Hpy166II	GTNNAC	4 cut(s)	231, 432, 602, 715
Hpy188III	TCNNGA	3 cut(s)	276, 761, 790
Hpy8I	GTNNAC	4 cut(s)	231, 432, 602, 715
Hpy99I	CGWCG	1 cut(s)	166
HpyAV	CCTTC	4 cut(s)	40, 356, 418, 633
HpyCH4III	ACNGT	3 cut(s)	64, 73, 712
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	5 cut(s)	13, 114, 147, 373, 493
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 313
HpyF3I	CTNAG	4 cut(s)	312, 384, 579, 725
HpySE526I	ACGT	1 cut(s)	183
Hsp92I	GRCGYC	1 cut(s)	670
Hsp92II	CATG	5 cut(s)	17, 25, 377, 600, 793
Kpn2I	TCCGGA	1 cut(s)	760
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	4 cut(s)	55, 66, 106, 763
Lsp1109I	GCAGC	2 cut(s)	319, 477
MaeI	CTAG	3 cut(s)	98, 743, 776
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	3 cut(s)	379, 469, 589
MalI	GATC	4 cut(s)	57, 68, 108, 765
MbiI	CCGCTC	1 cut(s)	658
MboI	GATC	4 cut(s)	55, 66, 106, 763
MboII	GAAGA	3 cut(s)	516, 611, 650
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	2 cut(s)	350, 408
MluCI	AATT	6 cut(s)	30, 76, 223, 338, 567, 572
MlyI	GAGTC	1 cut(s)	590
MmeI	TCCRAC	1 cut(s)	200
MnlI	CCTC	5 cut(s)	10, 143, 268, 700, 742
MroI	TCCGGA	1 cut(s)	760
MseI	TTAA	2 cut(s)	647, 832
MspI	CCGG	4 cut(s)	209, 292, 296, 761
MspR9I	CCNGG	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	38
MwoI	GCNNNNNNNGC	2 cut(s)	47, 313
NdeII	GATC	4 cut(s)	55, 66, 106, 763
NlaIII	CATG	5 cut(s)	17, 25, 377, 600, 793
NmuCI	GTSAC	1 cut(s)	379
NspI	RCATGY	1 cut(s)	600
PagI	TCATGA	1 cut(s)	789
PceI	AGGCCT	1 cut(s)	366
PkrI	GCNGC	2 cut(s)	309, 492
PleI	GAGTC	1 cut(s)	589
PpsI	GAGTC	1 cut(s)	589
Ppu21I	YACGTR	1 cut(s)	184
Psp124BI	GAGCTC	1 cut(s)	408
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PspPI	GGNCC	2 cut(s)	457, 660
PsuI	RGATCY	1 cut(s)	55
RsaI	GTAC	1 cut(s)	822
RsaNI	GTAC	1 cut(s)	821
SacI	GAGCTC	1 cut(s)	408
SaqAI	TTAA	2 cut(s)	647, 832
SatI	GCNGC	2 cut(s)	308, 491
Sau3AI	GATC	4 cut(s)	55, 66, 106, 763
Sau96I	GGNCC	2 cut(s)	457, 660
SchI	GAGTC	1 cut(s)	590
ScrFI	CCNGG	1 cut(s)	38
SduI	GDGCHC	2 cut(s)	350, 408
SinI	GGWCC	2 cut(s)	457, 660
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
SnaBI	TACGTA	1 cut(s)	184
SpeI	ACTAGT	1 cut(s)	742
Sse9I	AATT	6 cut(s)	30, 76, 223, 338, 567, 572
SseBI	AGGCCT	1 cut(s)	366
SsiI	CCGC	2 cut(s)	594, 658
SspI	AATATT	1 cut(s)	753
SspMI	CTAG	3 cut(s)	98, 743, 776
SstI	GAGCTC	1 cut(s)	408
StuI	AGGCCT	1 cut(s)	366
StyD4I	CCNGG	1 cut(s)	36
TaaI	ACNGT	3 cut(s)	64, 73, 712
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	1 cut(s)	161
TasI	AATT	6 cut(s)	30, 76, 223, 338, 567, 572
Tru1I	TTAA	2 cut(s)	647, 832
Tru9I	TTAA	2 cut(s)	647, 832
TscAI	CASTG	3 cut(s)	76, 640, 717
TseFI	GTSAC	1 cut(s)	379
TseI	GCWGC	2 cut(s)	307, 490
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	2 cut(s)	369, 528
TspGWI	ACGGA	1 cut(s)	179
TspRI	CASTG	3 cut(s)	76, 640, 717
VpaK11BI	GGWCC	2 cut(s)	457, 660
XapI	RAATTY	2 cut(s)	223, 338
XceI	RCATGY	1 cut(s)	600
XmiI	GTMKAC	1 cut(s)	431
XspI	CTAG	3 cut(s)	98, 743, 776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.