Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004386

Physical Location & Seq

Genomic Coordinates Reverse (-)

24097927 .. 24102185

Gene Structure 4259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G207000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGGCATTTTGCATGAGGATGTTGTGGTAATTAACCAGGCAAAGAAGGCTGGGGAACCCACTGTAATCACTGTCAATTGCCCTGACAAAACTGGATTGGGCTGTGATTTGTGCAGGGTTATATTGCTCTTTGGGCTAAGCATTTGCAGAGGAGATGTTTCAACAGATGGGAAATGGTGCTACCTAGTGTTTTGGGTGGTGGAAAAACCAAATACAAGGTGGAATTTGTTGACAAAGAGATTGTTGGAAGTGTGTCCATCGTATTTGTCGACTTCTGGAATATTCTATTATCACCCTGAAAACCAGCTGCCTAAGCCACCAGATGTTTTCCTTCTTGAATTCTGGTGCTCTTATGAACGGGAAGGCCTATTGCATGATGTCACTGAGGTTCTCTGTGAGCTGGAGCTCACAATACATAGAGTGAAGGTATCTACTACCCCAGATGGGAGAGTGATGGACCTTTTTTTTGTTACAGATACCAGAGAACTTCTTCATGCAAAAAGAAGACAAGACGAAACAATTCTTTGTCTGAAAGCTGTTTTAGGGGATGCCTTATTGAGTTGCAAAATTGAATTGGCTAGATCAGAGGTTACCGCTTGTTCACAGGGTTCTCCATGTCTTCCTTCTGCCATCACTGAAGAAATATTCAGTTTAGAGCTGCCCAATGGACGCCTAAGCAGATCTGTTGCCTCCAACCCCATTTCAGTAACAGTGGACAACAACCTTAGCCCATCTCACACACTCGTGCAAATCTTCTGTCAGGATCATAAAGGCCTTGTATATGATATCATGAGAACCCTAAAGGATTACAACATTCAGGTTTCTTATGGACGATTCTATGCAAGCCCAAAAGGAAATTGTGAGGTGGACTTGTTCATAATGCAAGCAGATGGCAAGAAGATTGTTGACCCCAACAAGCAAAATGCGTTATGTTCTCGTTTGAGAATGGAGCTTTTGCGTCCTCTTAGAGTGGCGGTGGTGAGCCGTGGCCCTGATACTGAGCTGGTGGTAGCTAACCCTGTTGAGTTGTCTGGCAGGGGTCGTCCTCTAGTCTTTTATGATATTACTCATGCCCTCAAAGTTCTGAAGACACACATCTTTTCGGTTAAGATAGGGAAACACATGATCCGAGATCGGGAGTGGGAGGTCTACAGAATCCTGCTGGATGAAGGAGTTGGTTATTCAGTGCCAAGGAACAAAATTGAGGAAGGTGTAAGAAATAAATTGATGGGTTGGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

414

Amino Acids

46.71

Weight (kDa)

6.8

Isoelectric Point (pI)

39.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36840
fragaria_vesca	FvH4_6g16600 FvH4_6g16600 FvH4_7g18540
malus_domestica	MD01G1101800.v1.1 MD04G1090700.v1.1 MD12G1108700.v1.1
prunus_persica	Prupe.2G207000_v2.0.a1 Prupe.7G127300_v2.0.a1
pyrus_communis	pycom01g12840 pycom04g08590 pycom12g10900
rosa_chinensis	RchiOBHm_Chr1g0362321 RchiOBHm_Chr2g0171731 RchiOBHm_Chr3g0470541
rosa_laevigata	RLG00000024260 RLG00000027651
rosa_multiflora	Rmu_sc0002115.1_g000012 Rmu_sc0020251.1_g000001
rosa_roxburghii	Rroxscaffold_4G00294250 Rroxscaffold_6G00410740
rosa_rugosa	Rorug01G0297600 Rorug01G0297700 Rorug03G0109900
rosa_samantha	Rh1AG306300 Rh1DG300000 Rh3AG160000 Rh3BG184600 Rh3CG175100 Rh3DG190100
rosa_wichuraiana	Rw1G027190 Rw3G015140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	269, 1149
AciI	CCGC	2 cut(s)	594, 974
AclWI	GGATC	2 cut(s)	771, 1120
AcsI	RAATTY	2 cut(s)	223, 338
AcuI	CTGAAG	2 cut(s)	657, 1106
AcyI	GRCGYC	1 cut(s)	670
AfiI	CCNNNNNNNGG	2 cut(s)	444, 1135
AgsI	TTSAA	3 cut(s)	162, 338, 572
AjnI	CCWGG	1 cut(s)	36
AleI	CACNNNNGTG	1 cut(s)	743
AluBI	AGCT	8 cut(s)	307, 400, 406, 536, 658, 952, 1003, 1013
AluI	AGCT	8 cut(s)	307, 400, 406, 536, 658, 952, 1003, 1013
Alw21I	GWGCWC	2 cut(s)	350, 408
AlwI	GGATC	2 cut(s)	771, 1120
AoxI	GGCC	3 cut(s)	364, 772, 988
ApeKI	GCWGC	2 cut(s)	307, 658
ApoI	RAATTY	2 cut(s)	223, 338
ArsI	GACNNNNNNTTYG	4 cut(s)	449, 481, 742, 774
Asp700I	GAANNNNTTC	2 cut(s)	489, 519
AspS9I	GGNCC	2 cut(s)	457, 989
AsuHPI	GGTGA	2 cut(s)	284, 991
AvaII	GGWCC	1 cut(s)	457
BanII	GRGCYC	1 cut(s)	408
BauI	CACGAG	1 cut(s)	743
BbsI	GAAGAC	3 cut(s)	511, 611, 1094
Bbv12I	GWGCWC	2 cut(s)	350, 408
BbvI	GCAGC	2 cut(s)	294, 645
BccI	CCATC	8 cut(s)	161, 265, 437, 448, 638, 739, 884, 1222
BceAI	ACGGC	1 cut(s)	969
BciT130I	CCWGG	1 cut(s)	38
BfaI	CTAG	3 cut(s)	185, 579, 1049
BfmI	CTRYAG	1 cut(s)	1150
BglII	AGATCT	1 cut(s)	680
BisI	GCNGC	2 cut(s)	308, 659
BlpI	GCTNAGC	1 cut(s)	137
BlsI	GCNGC	2 cut(s)	309, 660
Bme1390I	CCNGG	1 cut(s)	38
Bme18I	GGWCC	1 cut(s)	457
BmgT120I	GGNCC	2 cut(s)	457, 989
BmiI	GGNNCC	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	38
BmsI	GCATC	1 cut(s)	538
BpiI	GAAGAC	3 cut(s)	511, 611, 1094
BpmI	CTGGAG	1 cut(s)	422
Bpu10I	CCTNAGC	3 cut(s)	312, 674, 725
Bpu1102I	GCTNAGC	1 cut(s)	137
BsaHI	GRCGYC	1 cut(s)	670
BsaJI	CCNNGG	2 cut(s)	985, 1190
Bsc4I	CCNNNNNNNGG	2 cut(s)	444, 1135
Bse1I	ACTGG	1 cut(s)	97
BseBI	CCWGG	1 cut(s)	38
BseDI	CCNNGG	2 cut(s)	985, 1190
BseGI	GGATG	3 cut(s)	25, 553, 1171
BseLI	CCNNNNNNNGG	2 cut(s)	444, 1135
BseMII	CTCAG	2 cut(s)	375, 990
BseNI	ACTGG	1 cut(s)	97
BseRI	GAGGAG	1 cut(s)	165
BseXI	GCAGC	2 cut(s)	294, 645
BseYI	CCCAGC	1 cut(s)	50
BsgI	GTGCAG	1 cut(s)	133
BshFI	GGCC	3 cut(s)	366, 774, 990
BsiHKAI	GWGCWC	2 cut(s)	350, 408
BslI	CCNNNNNNNGG	2 cut(s)	444, 1135
BsnI	GGCC	3 cut(s)	366, 774, 990
Bsp1286I	GDGCHC	2 cut(s)	350, 408
Bsp143I	GATC	5 cut(s)	581, 680, 763, 1125, 1132
Bsp1720I	GCTNAGC	1 cut(s)	137
BspACI	CCGC	2 cut(s)	594, 974
BspANI	GGCC	3 cut(s)	366, 774, 990
BspCNI	CTCAG	2 cut(s)	376, 991
BspHI	TCATGA	1 cut(s)	789
BspLI	GGNNCC	1 cut(s)	57
BspPI	GGATC	2 cut(s)	771, 1120
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	2 cut(s)	985, 1190
BssMI	GATC	5 cut(s)	581, 680, 763, 1125, 1132
BssNI	GRCGYC	1 cut(s)	670
BssSI	CACGAG	1 cut(s)	743
BssT1I	CCWWGG	1 cut(s)	1190
Bst2BI	CACGAG	1 cut(s)	743
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	3 cut(s)	64, 73, 712
BstACI	GRCGYC	1 cut(s)	670
BstC8I	GCNNGC	2 cut(s)	844, 885
BstDEI	CTNAG	7 cut(s)	137, 312, 384, 674, 725, 965, 999
BstDSI	CCRYGG	1 cut(s)	985
BstEII	GGTNACC	1 cut(s)	589
BstF5I	GGATG	3 cut(s)	25, 553, 1171
BstKTI	GATC	5 cut(s)	584, 683, 766, 1128, 1135
BstMBI	GATC	5 cut(s)	581, 680, 763, 1125, 1132
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 133, 313
BstNI	CCWGG	1 cut(s)	38
BstPI	GGTNACC	1 cut(s)	589
BstSCI	CCNGG	1 cut(s)	36
BstSFI	CTRYAG	1 cut(s)	1150
BstV1I	GCAGC	2 cut(s)	294, 645
BstV2I	GAAGAC	3 cut(s)	511, 611, 1094
BstX2I	RGATCY	1 cut(s)	680
BstYI	RGATCY	1 cut(s)	680
BsuRI	GGCC	3 cut(s)	366, 774, 990
BtgI	CCRYGG	1 cut(s)	985
BtsCI	GGATG	3 cut(s)	25, 553, 1171
BtsIMutI	CAGTG	6 cut(s)	60, 69, 381, 633, 717, 1191
Cac8I	GCNNGC	2 cut(s)	844, 885
CciI	TCATGA	1 cut(s)	789
Cfr13I	GGNCC	2 cut(s)	457, 989
CseI	GACGC	2 cut(s)	678, 947
CviAII	CATG	7 cut(s)	14, 374, 494, 615, 790, 1070, 1123
DdeI	CTNAG	7 cut(s)	137, 312, 384, 674, 725, 965, 999
DpnI	GATC	5 cut(s)	583, 682, 765, 1127, 1134
DpnII	GATC	5 cut(s)	581, 680, 763, 1125, 1132
Ecl136II	GAGCTC	1 cut(s)	406
Eco130I	CCWWGG	1 cut(s)	1190
Eco147I	AGGCCT	2 cut(s)	366, 774
Eco24I	GRGCYC	1 cut(s)	408
Eco32I	GATATC	1 cut(s)	787
Eco47I	GGWCC	1 cut(s)	457
Eco53kI	GAGCTC	1 cut(s)	406
Eco57I	CTGAAG	2 cut(s)	657, 1106
Eco91I	GGTNACC	1 cut(s)	589
EcoICRI	GAGCTC	1 cut(s)	406
EcoO65I	GGTNACC	1 cut(s)	589
EcoRI	GAATTC	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	36
EcoRV	GATATC	1 cut(s)	787
EcoT14I	CCWWGG	1 cut(s)	1190
EcoT38I	GRGCYC	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	1190
FaeI	CATG	7 cut(s)	17, 377, 497, 618, 793, 1073, 1126
FatI	CATG	7 cut(s)	13, 373, 493, 614, 789, 1069, 1122
FblI	GTMKAC	2 cut(s)	269, 1149
Fnu4HI	GCNGC	2 cut(s)	308, 659
FokI	GGATG	3 cut(s)	32, 560, 1178
FriOI	GRGCYC	1 cut(s)	408
Fsp4HI	GCNGC	2 cut(s)	308, 659
FspBI	CTAG	3 cut(s)	185, 579, 1049
GluI	GCNGC	2 cut(s)	308, 659
GsaI	CCCAGC	1 cut(s)	54
GsuI	CTGGAG	1 cut(s)	422
HaeIII	GGCC	3 cut(s)	366, 774, 990
HgaI	GACGC	2 cut(s)	678, 947
Hin1I	GRCGYC	1 cut(s)	670
Hin1II	CATG	7 cut(s)	17, 377, 497, 618, 793, 1073, 1126
HincII	GTYRAC	3 cut(s)	231, 270, 907
HindII	GTYRAC	3 cut(s)	231, 270, 907
HinfI	GANTC	2 cut(s)	834, 1155
HphI	GGTGA	2 cut(s)	284, 991
Hpy166II	GTNNAC	7 cut(s)	231, 270, 602, 715, 868, 907, 1150
Hpy188I	TCNGA	4 cut(s)	531, 586, 1086, 1130
Hpy188III	TCNNGA	5 cut(s)	276, 335, 761, 790, 1136
Hpy8I	GTNNAC	7 cut(s)	231, 270, 602, 715, 868, 907, 1150
HpyAV	CCTTC	7 cut(s)	40, 341, 356, 418, 633, 1163, 1202
HpyCH4III	ACNGT	3 cut(s)	64, 73, 712
HpyCH4V	TGCA	9 cut(s)	13, 114, 147, 373, 497, 564, 748, 842, 883
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 133, 313
HpyF3I	CTNAG	7 cut(s)	137, 312, 384, 674, 725, 965, 999
Hsp92I	GRCGYC	1 cut(s)	670
Hsp92II	CATG	7 cut(s)	17, 377, 497, 618, 793, 1073, 1126
Kzo9I	GATC	5 cut(s)	581, 680, 763, 1125, 1132
LmnI	GCTCC	2 cut(s)	403, 949
Lsp1109I	GCAGC	2 cut(s)	294, 645
LweI	GCATC	1 cut(s)	538
MaeI	CTAG	3 cut(s)	185, 579, 1049
MaeIII	GTNAC	4 cut(s)	379, 469, 589, 706
MalI	GATC	5 cut(s)	583, 682, 765, 1127, 1134
MboI	GATC	5 cut(s)	581, 680, 763, 1125, 1132
MboII	GAAGA	7 cut(s)	482, 516, 611, 650, 745, 910, 1099
MfeI	CAATTG	1 cut(s)	76
MflI	RGATCY	1 cut(s)	680
MhlI	GDGCHC	2 cut(s)	350, 408
MmeI	TCCRAC	2 cut(s)	225, 717
MroXI	GAANNNNTTC	2 cut(s)	489, 519
MseI	TTAA	2 cut(s)	33, 1107
MslI	CAYNNNNRTG	2 cut(s)	18, 743
MspA1I	CMGCKG	1 cut(s)	307
MspR9I	CCNGG	1 cut(s)	38
MunI	CAATTG	1 cut(s)	76
MvaI	CCWGG	1 cut(s)	38
MwoI	GCNNNNNNNGC	3 cut(s)	47, 133, 313
NdeII	GATC	5 cut(s)	581, 680, 763, 1125, 1132
NlaIII	CATG	7 cut(s)	17, 377, 497, 618, 793, 1073, 1126
NlaIV	GGNNCC	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	379
OliI	CACNNNNGTG	1 cut(s)	743
PagI	TCATGA	1 cut(s)	789
PceI	AGGCCT	2 cut(s)	366, 774
PcsI	WCGNNNNNNNCGW	1 cut(s)	266
PdmI	GAANNNNTTC	2 cut(s)	489, 519
PfeI	GAWTC	2 cut(s)	834, 1155
PkrI	GCNGC	2 cut(s)	309, 660
Psp124BI	GAGCTC	1 cut(s)	408
Psp6I	CCWGG	1 cut(s)	36
PspEI	GGTNACC	1 cut(s)	589
PspFI	CCCAGC	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	57
PspPI	GGNCC	2 cut(s)	457, 989
PsuI	RGATCY	1 cut(s)	680
PvuII	CAGCTG	1 cut(s)	307
RseI	CAYNNNNRTG	2 cut(s)	18, 743
SacI	GAGCTC	1 cut(s)	408
SalI	GTCGAC	1 cut(s)	268
SaqAI	TTAA	2 cut(s)	33, 1107
SatI	GCNGC	2 cut(s)	308, 659
Sau3AI	GATC	5 cut(s)	581, 680, 763, 1125, 1132
Sau96I	GGNCC	2 cut(s)	457, 989
ScrFI	CCNGG	1 cut(s)	38
SduI	GDGCHC	2 cut(s)	350, 408
SfaNI	GCATC	1 cut(s)	538
SfcI	CTRYAG	1 cut(s)	1150
SinI	GGWCC	1 cut(s)	457
SmiMI	CAYNNNNRTG	2 cut(s)	18, 743
SseBI	AGGCCT	2 cut(s)	366, 774
SsiI	CCGC	2 cut(s)	594, 974
SspI	AATATT	2 cut(s)	282, 645
SspMI	CTAG	3 cut(s)	185, 579, 1049
SstI	GAGCTC	1 cut(s)	408
StuI	AGGCCT	2 cut(s)	366, 774
StyD4I	CCNGG	1 cut(s)	36
StyI	CCWWGG	1 cut(s)	1190
TaaI	ACNGT	3 cut(s)	64, 73, 712
TaqI	TCGA	1 cut(s)	269
TfiI	GAWTC	2 cut(s)	834, 1155
Tru1I	TTAA	2 cut(s)	33, 1107
Tru9I	TTAA	2 cut(s)	33, 1107
TscAI	CASTG	6 cut(s)	67, 76, 388, 640, 717, 1191
TseFI	GTSAC	1 cut(s)	379
TseI	GCWGC	2 cut(s)	307, 658
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	4 cut(s)	369, 482, 865, 1182
TspRI	CASTG	6 cut(s)	67, 76, 388, 640, 717, 1191
VpaK11BI	GGWCC	1 cut(s)	457
XapI	RAATTY	2 cut(s)	223, 338
XcmI	CCANNNNNNNNNTGG	1 cut(s)	216
XmiI	GTMKAC	2 cut(s)	269, 1149
XmnI	GAANNNNTTC	2 cut(s)	489, 519
XspI	CTAG	3 cut(s)	185, 579, 1049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.