Rh3DG190100

ACT domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0004386
Physical Location & Seq
Reverse (-)
16941526 .. 16945295
3770 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG190100.1

Sequence Viewer

Length: 1170 bp
ATGGGTATTCTACACGACGATGTGGTAATCATTACAGAGCCAGAGAAAGAAGGCGACCCAAGTGTGATTACCATAAATTGCCCAGACAAAACCGGCTTGGGCTGTGACTTGTGTCGCATCATTCTCTTCTTTGGTCTTAGCATTGCCAGAGGAGATGTGTCAACGGATGGGAAGTGGTGCTTCTTAGTGTTTTGGGTGGTTGGGAACTCAGGAACAAGGTGGGATTTGTTGAAGAGGAGGTTAATGGAGACTTGTCCATCTTTTTCTTCAGCTTCTGGGATTTCCTTTTACCGCTATGAATTGCAGCCGCCAAAGCCTCCAGATGTGTTCCTTCTCAAGTTCTGTTGTTATGATCGGAGAGGGATTTTACATGATGTGACAGAGGTTCTATGTGAACTCGAGCTCACCATAAAGAAAGTCAAGGTATCCACCACCCCGGATGGGAAAGTGATGGACCTGTTTTTCGTCACAGACACTAGGGAACTTCTGCATACAAATAAGAGAAAGGATGAGGTATCTGACCACTTAAAAGCTGGTACGGGCAATGCCATGATAAGTTTTGATATTGAAATGGTTGGTCCAGAGATTACTGCATGTTCACAGTCATCTTCATTTCTCCCATCTGTTCTTATGGAGGACATGTTTCATTTGGAAATGCCTGATGAACTCCCAAGTGGAGTAGTCACCTCTAGCTGTGTTTCTGTGAATATGGACAATTCACTCAGTCCTGGCCACACACTGGTCCAAATCGTTTGCAAAGATCACAAAGGCCTCCTTTATGATATAATGAGAACTCTAAAGGATTATAATATTCAGATCTCTTATGGGCGCTTCTCTACAAAACAAAGAAGAAACTGTGAGATTGACTTGTTCATCGTGCAAGCTGATGGAAAGAAGATTGTTGATCCAAGCAAGCAGAATGCTTTGACATCTCGTTTGCAGATGGAACTACTTCGTCCTCTCAGAGTAGCTGTTGTTAGCAAAGGTCCTGATACAGAGCTCCTGGTTGCTAATCCGGTGGAATTATCTGGGAAAGGCCGGCCTCTTGTTTTCCATGATGTAACCCTTGCTCTCAAGATGCTGGACACTGGCATATTTTCAGTAATTACCCGATACATATTTTCTAGTGTTTGGTGTTTTTCATGTAGTCCCTTTCTATGCAAATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ACT

Protein Analysis

389

Amino Acids

43.62

Weight (kDa)

5.95

Isoelectric Point (pI)

38.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACR10_N PF24914 12 - 86 1.1e-38 ACT domain-containing protein ACR10, N-terminal
ACT PF01842 112 - 167 4.7e-06 ACT domain
ACT_ACR9_3rd PF24931 234 - 331 5.8e-50 ACR9-like, ACT-like domain
ACT_ACR9_C PF24926 332 - 374 5.2e-18 ACT domain-containing protein ACR9, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 807
AccB7I CCANNNNNTGG 1 cut(s) 739
AciI CCGC 2 cut(s) 292, 308
AclWI GGATC 1 cut(s) 899
AcoI YGGCCR 1 cut(s) 730
AcuI CTGAAG 1 cut(s) 252
AfaI GTAC 1 cut(s) 538
AfiI CCNNNNNNNGG 2 cut(s) 441, 739
AflIII ACRYGT 1 cut(s) 639
AgsI TTSAA 2 cut(s) 232, 569
AjnI CCWGG 2 cut(s) 727, 1002
AluBI AGCT 7 cut(s) 272, 403, 533, 693, 884, 971, 1000
AluI AGCT 7 cut(s) 272, 403, 533, 693, 884, 971, 1000
Alw21I GWGCWC 2 cut(s) 405, 1002
Alw26I GTCTC 1 cut(s) 242
AlwI GGATC 1 cut(s) 899
AlwNI CAGNNNCTG 1 cut(s) 275
Ama87I CYCGRG 1 cut(s) 398
AoxI GGCC 4 cut(s) 730, 769, 1036, 1040
ApeKI GCWGC 1 cut(s) 304
ArsI GACNNNNNNTTYG 4 cut(s) 446, 478, 919, 951
Asp700I GAANNNNTTC 1 cut(s) 951
AspLEI GCGC 1 cut(s) 831
AspS9I GGNCC 4 cut(s) 454, 578, 742, 986
AsuC2I CCSGG 1 cut(s) 437
AsuHPI GGTGA 2 cut(s) 397, 676
AvaI CYCGRG 1 cut(s) 398
AvaII GGWCC 4 cut(s) 454, 578, 742, 986
BalI TGGCCA 1 cut(s) 732
BanII GRGCYC 2 cut(s) 405, 1002
Bbv12I GWGCWC 2 cut(s) 405, 1002
BbvI GCAGC 1 cut(s) 316
BccI CCATC 7 cut(s) 161, 265, 434, 445, 628, 881, 937
BciT130I CCWGG 2 cut(s) 729, 1004
BciVI GTATCC 1 cut(s) 436
BcnI CCSGG 1 cut(s) 437
BcoDI GTCTC 1 cut(s) 242
BfaI CTAG 3 cut(s) 477, 690, 1125
BfoI RGCGCY 1 cut(s) 832
BfuI GTATCC 1 cut(s) 436
BglII AGATCT 1 cut(s) 816
BisI GCNGC 2 cut(s) 305, 308
BlsI GCNGC 2 cut(s) 306, 309
Bme1390I CCNGG 3 cut(s) 437, 729, 1004
Bme18I GGWCC 4 cut(s) 454, 578, 742, 986
BmeT110I CYCGRG 1 cut(s) 398
BmgT120I GGNCC 4 cut(s) 454, 578, 742, 986
BmrFI CCNGG 3 cut(s) 437, 729, 1004
BmsI GCATC 2 cut(s) 126, 1068
BoxI GACNNNNGTC 1 cut(s) 111
BpmI CTGGAG 1 cut(s) 303
BpuEI CTTGAG 2 cut(s) 320, 1058
BpuMI CCSGG 1 cut(s) 437
BsaJI CCNNGG 1 cut(s) 435
BsaWI WCCGGW 1 cut(s) 1015
BsaXI ACNNNNNCTCC 2 cut(s) 626, 656
Bsc4I CCNNNNNNNGG 2 cut(s) 441, 739
Bse118I RCCGGY 2 cut(s) 92, 1038
Bse1I ACTGG 2 cut(s) 744, 1093
Bse3DI GCAATG 2 cut(s) 141, 550
BseBI CCWGG 2 cut(s) 729, 1004
BseDI CCNNGG 1 cut(s) 435
BseGI GGATG 3 cut(s) 172, 445, 514
BseLI CCNNNNNNNGG 2 cut(s) 441, 739
BseMI GCAATG 2 cut(s) 141, 550
BseMII CTCAG 3 cut(s) 222, 736, 976
BseNI ACTGG 2 cut(s) 744, 1093
BseRI GAGGAG 2 cut(s) 165, 250
BseXI GCAGC 1 cut(s) 316
BshFI GGCC 4 cut(s) 732, 771, 1038, 1042
BsiHKAI GWGCWC 2 cut(s) 405, 1002
BsiHKCI CYCGRG 1 cut(s) 398
BsiSI CCGG 4 cut(s) 93, 437, 1016, 1039
BslFI GGGAC 1 cut(s) 1134
BslI CCNNNNNNNGG 2 cut(s) 441, 739
BsmAI GTCTC 1 cut(s) 242
BsmFI GGGAC 1 cut(s) 1134
BsmI GAATGC 1 cut(s) 925
BsnI GGCC 4 cut(s) 732, 771, 1038, 1042
BsoBI CYCGRG 1 cut(s) 398
Bsp1286I GDGCHC 2 cut(s) 405, 1002
Bsp143I GATC 4 cut(s) 352, 760, 816, 904
BspACI CCGC 2 cut(s) 292, 308
BspANI GGCC 4 cut(s) 732, 771, 1038, 1042
BspCNI CTCAG 3 cut(s) 221, 735, 975
BspPI GGATC 1 cut(s) 899
BsrDI GCAATG 2 cut(s) 141, 550
BsrFI RCCGGY 2 cut(s) 92, 1038
BsrI ACTGG 2 cut(s) 744, 1093
BssAI RCCGGY 2 cut(s) 92, 1038
BssECI CCNNGG 1 cut(s) 435
BssMI GATC 4 cut(s) 352, 760, 816, 904
Bst2UI CCWGG 2 cut(s) 729, 1004
Bst4CI ACNGT 2 cut(s) 603, 857
Bst6I CTCTTC 2 cut(s) 131, 227
BstC8I GCNNGC 3 cut(s) 882, 914, 1040
BstDEI CTNAG 5 cut(s) 137, 184, 208, 722, 962
BstF5I GGATG 3 cut(s) 172, 445, 514
BstH2I RGCGCY 1 cut(s) 832
BstHHI GCGC 1 cut(s) 831
BstKTI GATC 4 cut(s) 355, 763, 819, 907
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 4 cut(s) 352, 760, 816, 904
BstMWI GCNNNNNNNGC 1 cut(s) 313
BstNI CCWGG 2 cut(s) 729, 1004
BstNSI RCATGY 2 cut(s) 597, 643
BstPAI GACNNNNGTC 1 cut(s) 111
BstSCI CCNGG 3 cut(s) 435, 727, 1002
BstV1I GCAGC 1 cut(s) 316
BstX2I RGATCY 1 cut(s) 816
BstYI RGATCY 1 cut(s) 816
BsuI GTATCC 1 cut(s) 436
BsuRI GGCC 4 cut(s) 732, 771, 1038, 1042
BtsCI GGATG 3 cut(s) 172, 445, 514
BtsIMutI CAGTG 2 cut(s) 737, 1086
Cac8I GCNNGC 3 cut(s) 882, 914, 1040
CaiI CAGNNNCTG 1 cut(s) 275
CfoI GCGC 1 cut(s) 831
Cfr10I RCCGGY 2 cut(s) 92, 1038
Cfr13I GGNCC 4 cut(s) 454, 578, 742, 986
Csp6I GTAC 1 cut(s) 537
CviAII CATG 6 cut(s) 371, 550, 594, 640, 1055, 1143
CviQI GTAC 1 cut(s) 537
DdeI CTNAG 5 cut(s) 137, 184, 208, 722, 962
DpnI GATC 4 cut(s) 354, 762, 818, 906
DpnII GATC 4 cut(s) 352, 760, 816, 904
EaeI YGGCCR 1 cut(s) 730
Eam1104I CTCTTC 2 cut(s) 131, 227
EarI CTCTTC 2 cut(s) 131, 227
Ecl136II GAGCTC 2 cut(s) 403, 1000
Eco147I AGGCCT 1 cut(s) 771
Eco24I GRGCYC 2 cut(s) 405, 1002
Eco47I GGWCC 4 cut(s) 454, 578, 742, 986
Eco53kI GAGCTC 2 cut(s) 403, 1000
Eco57I CTGAAG 1 cut(s) 252
Eco88I CYCGRG 1 cut(s) 398
EcoICRI GAGCTC 2 cut(s) 403, 1000
EcoO109I RGGNCCY 1 cut(s) 986
EcoRII CCWGG 2 cut(s) 727, 1002
EcoT38I GRGCYC 2 cut(s) 405, 1002
FaeI CATG 6 cut(s) 374, 553, 597, 643, 1058, 1146
FalI AAGNNNNNCTT 4 cut(s) 164, 196, 759, 791
FaqI GGGAC 1 cut(s) 1134
FatI CATG 6 cut(s) 370, 549, 593, 639, 1054, 1142
Fnu4HI GCNGC 2 cut(s) 305, 308
FokI GGATG 3 cut(s) 179, 452, 521
FriOI GRGCYC 2 cut(s) 405, 1002
FseI GGCCGGCC 1 cut(s) 1042
Fsp4HI GCNGC 2 cut(s) 305, 308
FspBI CTAG 3 cut(s) 477, 690, 1125
GlaI GCGC 1 cut(s) 830
GluI GCNGC 2 cut(s) 305, 308
GsuI CTGGAG 1 cut(s) 303
HaeII RGCGCY 1 cut(s) 832
HaeIII GGCC 4 cut(s) 732, 771, 1038, 1042
HapII CCGG 4 cut(s) 93, 437, 1016, 1039
HhaI GCGC 1 cut(s) 831
Hin1II CATG 6 cut(s) 374, 553, 597, 643, 1058, 1146
Hin6I GCGC 1 cut(s) 829
HinP1I GCGC 1 cut(s) 829
HincII GTYRAC 1 cut(s) 162
HindII GTYRAC 1 cut(s) 162
HpaII CCGG 4 cut(s) 93, 437, 1016, 1039
HphI GGTGA 2 cut(s) 397, 676
Hpy166II GTNNAC 3 cut(s) 162, 395, 599
Hpy188I TCNGA 4 cut(s) 357, 520, 816, 965
Hpy188III TCNNGA 5 cut(s) 210, 320, 581, 989, 1075
Hpy8I GTNNAC 3 cut(s) 162, 395, 599
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 2 cut(s) 44, 341
HpyCH4III ACNGT 2 cut(s) 603, 857
HpyCH4V TGCA 7 cut(s) 304, 490, 593, 756, 880, 940, 1161
HpyF10VI GCNNNNNNNGC 1 cut(s) 313
HpyF3I CTNAG 5 cut(s) 137, 184, 208, 722, 962
Hsp92II CATG 6 cut(s) 374, 553, 597, 643, 1058, 1146
HspAI GCGC 1 cut(s) 829
KroI GCCGGC 1 cut(s) 1038
KroNI GCCGGC 1 cut(s) 1040
Kzo9I GATC 4 cut(s) 352, 760, 816, 904
LmnI GCTCC 1 cut(s) 1005
Lsp1109I GCAGC 1 cut(s) 316
LweI GCATC 2 cut(s) 126, 1068
MaeI CTAG 3 cut(s) 477, 690, 1125
MaeIII GTNAC 5 cut(s) 104, 376, 466, 682, 1060
MalI GATC 4 cut(s) 354, 762, 818, 906
MboI GATC 4 cut(s) 352, 760, 816, 904
MboII GAAGA 6 cut(s) 118, 244, 258, 600, 861, 907
MflI RGATCY 1 cut(s) 816
MhlI GDGCHC 2 cut(s) 405, 1002
MlsI TGGCCA 1 cut(s) 732
MluCI AATT 5 cut(s) 76, 299, 715, 1022, 1104
MluNI TGGCCA 1 cut(s) 732
Mox20I TGGCCA 1 cut(s) 732
MroNI GCCGGC 1 cut(s) 1038
MroXI GAANNNNTTC 1 cut(s) 951
MscI TGGCCA 1 cut(s) 732
MseI TTAA 2 cut(s) 242, 527
MslI CAYNNNNRTG 1 cut(s) 18
Msp20I TGGCCA 1 cut(s) 732
MspI CCGG 4 cut(s) 93, 437, 1016, 1039
MspR9I CCNGG 3 cut(s) 437, 729, 1004
Mva1269I GAATGC 1 cut(s) 925
MvaI CCWGG 2 cut(s) 729, 1004
MwoI GCNNNNNNNGC 1 cut(s) 313
NaeI GCCGGC 1 cut(s) 1040
NciI CCSGG 1 cut(s) 437
NdeII GATC 4 cut(s) 352, 760, 816, 904
NgoMIV GCCGGC 1 cut(s) 1038
NlaIII CATG 6 cut(s) 374, 553, 597, 643, 1058, 1146
NmuCI GTSAC 4 cut(s) 104, 376, 466, 682
NspI RCATGY 2 cut(s) 597, 643
PaeR7I CTCGAG 1 cut(s) 398
PceI AGGCCT 1 cut(s) 771
PciI ACATGT 1 cut(s) 639
PctI GAATGC 1 cut(s) 925
PdiI GCCGGC 1 cut(s) 1040
PdmI GAANNNNTTC 1 cut(s) 951
PflMI CCANNNNNTGG 1 cut(s) 739
PkrI GCNGC 2 cut(s) 306, 309
PpuMI RGGWCCY 1 cut(s) 986
PscI ACATGT 1 cut(s) 639
PshAI GACNNNNGTC 1 cut(s) 111
PsiI TTATAA 1 cut(s) 807
Psp124BI GAGCTC 2 cut(s) 405, 1002
Psp5II RGGWCCY 1 cut(s) 986
Psp6I CCWGG 2 cut(s) 727, 1002
PspGI CCWGG 2 cut(s) 727, 1002
PspPI GGNCC 4 cut(s) 454, 578, 742, 986
PspPPI RGGWCCY 1 cut(s) 986
PspXI VCTCGAGB 1 cut(s) 398
PstNI CAGNNNCTG 1 cut(s) 275
PsuI RGATCY 1 cut(s) 816
RigI GGCCGGCC 1 cut(s) 1042
RsaI GTAC 1 cut(s) 538
RsaNI GTAC 1 cut(s) 537
RseI CAYNNNNRTG 1 cut(s) 18
SacI GAGCTC 2 cut(s) 405, 1002
SaqAI TTAA 2 cut(s) 242, 527
SatI GCNGC 2 cut(s) 305, 308
Sau3AI GATC 4 cut(s) 352, 760, 816, 904
Sau96I GGNCC 4 cut(s) 454, 578, 742, 986
ScrFI CCNGG 3 cut(s) 437, 729, 1004
SduI GDGCHC 2 cut(s) 405, 1002
SfaNI GCATC 2 cut(s) 126, 1068
Sfr274I CTCGAG 1 cut(s) 398
SinI GGWCC 4 cut(s) 454, 578, 742, 986
SlaI CTCGAG 1 cut(s) 398
SmiMI CAYNNNNRTG 1 cut(s) 18
SmlI CTYRAG 3 cut(s) 335, 398, 1073
SmoI CTYRAG 3 cut(s) 335, 398, 1073
Sse9I AATT 5 cut(s) 76, 299, 715, 1022, 1104
SseBI AGGCCT 1 cut(s) 771
SsiI CCGC 2 cut(s) 292, 308
SspI AATATT 1 cut(s) 811
SspMI CTAG 3 cut(s) 477, 690, 1125
SstI GAGCTC 2 cut(s) 405, 1002
StuI AGGCCT 1 cut(s) 771
StyD4I CCNGG 3 cut(s) 435, 727, 1002
TaaI ACNGT 2 cut(s) 603, 857
TaqI TCGA 1 cut(s) 399
TasI AATT 5 cut(s) 76, 299, 715, 1022, 1104
TauI GCSGC 1 cut(s) 310
Tru1I TTAA 2 cut(s) 242, 527
Tru9I TTAA 2 cut(s) 242, 527
TscAI CASTG 2 cut(s) 744, 1093
TseFI GTSAC 4 cut(s) 104, 376, 466, 682
TseI GCWGC 1 cut(s) 304
Tsp45I GTSAC 4 cut(s) 104, 376, 466, 682
TspDTI ATGAA 6 cut(s) 312, 600, 635, 678, 862, 1131
TspGWI ACGGA 1 cut(s) 179
TspRI CASTG 2 cut(s) 744, 1093
Van91I CCANNNNNTGG 1 cut(s) 739
VpaK11BI GGWCC 4 cut(s) 454, 578, 742, 986
XceI RCATGY 2 cut(s) 597, 643
XcmI CCANNNNNNNNNTGG 1 cut(s) 530
XhoI CTCGAG 1 cut(s) 398
XmnI GAANNNNTTC 1 cut(s) 951
XspI CTAG 3 cut(s) 477, 690, 1125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.