RchiOBHm_Chr2g0171731

ACT domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0004386
Physical Location & Seq
Forward (+)
85304668 .. 85306707
2040 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53911

Sequence Viewer

Length: 696 bp
ATGGGCATTTTGCATGAGGACATGGTGGTAATTAGCCAGGCAGAGAAGGCTGGAGATCCTACTGTGATCACTGTGAATTGCCCTGACAAAACTGGGCTAGGCTGTGATCTGTGCAGGGTTATATTGCTCTTTGGGATAAGCATTTGCAGAGGAGATGTTTCGACGGATGGAAAGTGGTGCTACGTAGTGTTTTGGGTGGTGGGAAAACCGGAAACAAGGTGGAATTTGTTGACAAAGAGATTGTTAGAAGTGTGTCCCTCACATTTTACAACTTCTGGAATATACTATTACCGGCCGGAAAACCAGCAGCCTAAGCCATTAGATGTTTTCCTTTTGAAATTCTGGTGCTCTTATGAACAGGAAGGCCTATTGCATGATGTCACTAAGGTTCTTTGTGAGCTTGAGCTCACAATAGAGAGAGTGAAGGTGTCTACTACCCCAGATGGGAAAGTGATGGACCTTTTTTTTGTTACAGATACCAGAGAACTGCTGCATACAAAAAGAAGACAAGATGAAACAATTAATTGCCTGAAAGCTGTCCTGGGGAATGTCTTGTTGGGTTGTGAAATTGAATTGGCTGAGTCAAAAGTTACCGCATGTTCACAGGGTTCTCCTTATCTTCCTTGTGTTGGTACTTCTTGGAGACTTAGTTCAAAGTTTGTGGTTATGTTTTGGTTGGACAGGATCAGTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

231

Amino Acids

26.14

Weight (kDa)

5.85

Isoelectric Point (pI)

33.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACR10_N PF24914 11 - 86 2.1e-39 ACT domain-containing protein ACR10, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 431
AciI CCGC 1 cut(s) 594
AclWI GGATC 2 cut(s) 50, 692
AcoI YGGCCR 1 cut(s) 293
AcsI RAATTY 2 cut(s) 223, 338
AfaI GTAC 1 cut(s) 634
AfiI CCNNNNNNNGG 2 cut(s) 444, 629
AgsI TTSAA 3 cut(s) 337, 572, 654
AjnI CCWGG 2 cut(s) 36, 540
AjuI GAANNNNNNNTTGG 2 cut(s) 539, 571
AloI GAACNNNNNNTCC 2 cut(s) 634, 666
AluBI AGCT 4 cut(s) 400, 406, 536, 693
AluI AGCT 4 cut(s) 400, 406, 536, 693
Alw21I GWGCWC 2 cut(s) 350, 408
Alw26I GTCTC 1 cut(s) 637
AlwI GGATC 2 cut(s) 50, 692
AoxI GGCC 2 cut(s) 293, 364
ApeKI GCWGC 2 cut(s) 307, 490
ApoI RAATTY 2 cut(s) 223, 338
ArsI GACNNNNNNTTYG 2 cut(s) 449, 481
AseI ATTAAT 1 cut(s) 522
AspS9I GGNCC 1 cut(s) 457
AvaII GGWCC 1 cut(s) 457
BanII GRGCYC 1 cut(s) 408
BbsI GAAGAC 1 cut(s) 511
Bbv12I GWGCWC 2 cut(s) 350, 408
BbvI GCAGC 2 cut(s) 319, 477
BccI CCATC 3 cut(s) 161, 437, 448
BciT130I CCWGG 2 cut(s) 38, 542
BclI TGATCA 1 cut(s) 66
BcoDI GTCTC 1 cut(s) 637
BfaI CTAG 2 cut(s) 98, 694
BisI GCNGC 2 cut(s) 308, 491
BlsI GCNGC 2 cut(s) 309, 492
Bme1390I CCNGG 2 cut(s) 38, 542
Bme18I GGWCC 1 cut(s) 457
BmgT120I GGNCC 1 cut(s) 457
BmrFI CCNGG 2 cut(s) 38, 542
BmrI ACTGGG 1 cut(s) 102
BmuI ACTGGG 1 cut(s) 102
BpiI GAAGAC 1 cut(s) 511
BpmI CTGGAG 1 cut(s) 72
Bpu10I CCTNAGC 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 422
BsaAI YACGTR 1 cut(s) 184
BsaJI CCNNGG 1 cut(s) 541
BsaWI WCCGGW 1 cut(s) 208
BsaXI ACNNNNNCTCC 2 cut(s) 634, 664
Bsc4I CCNNNNNNNGG 2 cut(s) 444, 629
Bse118I RCCGGY 1 cut(s) 291
Bse1I ACTGG 1 cut(s) 97
BseBI CCWGG 2 cut(s) 38, 542
BseDI CCNNGG 1 cut(s) 541
BseGI GGATG 1 cut(s) 172
BseLI CCNNNNNNNGG 2 cut(s) 444, 629
BseMII CTCAG 1 cut(s) 570
BseNI ACTGG 1 cut(s) 97
BseRI GAGGAG 1 cut(s) 165
BseX3I CGGCCG 1 cut(s) 293
BseXI GCAGC 2 cut(s) 319, 477
BsgI GTGCAG 1 cut(s) 133
Bsh1285I CGRYCG 1 cut(s) 296
BshFI GGCC 2 cut(s) 295, 366
BsiEI CGRYCG 1 cut(s) 296
BsiHKAI GWGCWC 2 cut(s) 350, 408
BsiSI CCGG 3 cut(s) 209, 292, 296
BslFI GGGAC 1 cut(s) 240
BslI CCNNNNNNNGG 2 cut(s) 444, 629
BsmAI GTCTC 1 cut(s) 637
BsmFI GGGAC 1 cut(s) 240
BsnI GGCC 2 cut(s) 295, 366
Bsp1286I GDGCHC 2 cut(s) 350, 408
Bsp143I GATC 4 cut(s) 55, 66, 106, 684
BspACI CCGC 1 cut(s) 594
BspANI GGCC 2 cut(s) 295, 366
BspCNI CTCAG 1 cut(s) 571
BspPI GGATC 2 cut(s) 50, 692
BsrFI RCCGGY 1 cut(s) 291
BsrI ACTGG 1 cut(s) 97
BssAI RCCGGY 1 cut(s) 291
BssECI CCNNGG 1 cut(s) 541
BssMI GATC 4 cut(s) 55, 66, 106, 684
Bst2UI CCWGG 2 cut(s) 38, 542
Bst4CI ACNGT 2 cut(s) 64, 73
BstBAI YACGTR 1 cut(s) 184
BstDEI CTNAG 4 cut(s) 312, 384, 579, 647
BstF5I GGATG 1 cut(s) 172
BstKTI GATC 4 cut(s) 58, 69, 109, 687
BstMAI GTCTC 1 cut(s) 637
BstMBI GATC 4 cut(s) 55, 66, 106, 684
BstMCI CGRYCG 1 cut(s) 296
BstMWI GCNNNNNNNGC 2 cut(s) 47, 313
BstNI CCWGG 2 cut(s) 38, 542
BstNSI RCATGY 1 cut(s) 600
BstSCI CCNGG 2 cut(s) 36, 540
BstSNI TACGTA 1 cut(s) 184
BstV1I GCAGC 2 cut(s) 319, 477
BstV2I GAAGAC 1 cut(s) 511
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BstZI CGGCCG 1 cut(s) 293
BsuRI GGCC 2 cut(s) 295, 366
BtsCI GGATG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 69
Cfr10I RCCGGY 1 cut(s) 291
Cfr13I GGNCC 1 cut(s) 457
Csp6I GTAC 1 cut(s) 633
CspCI CAANNNNNGTGG 2 cut(s) 642, 677
CviAII CATG 4 cut(s) 14, 22, 374, 597
CviQI GTAC 1 cut(s) 633
DdeI CTNAG 4 cut(s) 312, 384, 579, 647
DpnI GATC 4 cut(s) 57, 68, 108, 686
DpnII GATC 4 cut(s) 55, 66, 106, 684
EaeI YGGCCR 1 cut(s) 293
EagI CGGCCG 1 cut(s) 293
Ecl136II GAGCTC 1 cut(s) 406
EclXI CGGCCG 1 cut(s) 293
Eco105I TACGTA 1 cut(s) 184
Eco147I AGGCCT 1 cut(s) 366
Eco24I GRGCYC 1 cut(s) 408
Eco47I GGWCC 1 cut(s) 457
Eco52I CGGCCG 1 cut(s) 293
Eco53kI GAGCTC 1 cut(s) 406
EcoICRI GAGCTC 1 cut(s) 406
EcoRII CCWGG 2 cut(s) 36, 540
EcoT38I GRGCYC 1 cut(s) 408
FaeI CATG 4 cut(s) 17, 25, 377, 600
FaiI YATR 9 cut(s) 15, 23, 122, 283, 354, 375, 495, 598, 668
FaqI GGGAC 1 cut(s) 240
FatI CATG 4 cut(s) 13, 21, 373, 596
FbaI TGATCA 1 cut(s) 66
FblI GTMKAC 1 cut(s) 431
Fnu4HI GCNGC 2 cut(s) 308, 491
FokI GGATG 1 cut(s) 179
FriOI GRGCYC 1 cut(s) 408
Fsp4HI GCNGC 2 cut(s) 308, 491
FspBI CTAG 2 cut(s) 98, 694
GluI GCNGC 2 cut(s) 308, 491
GsuI CTGGAG 1 cut(s) 72
HaeIII GGCC 2 cut(s) 295, 366
HapII CCGG 3 cut(s) 209, 292, 296
Hin1II CATG 4 cut(s) 17, 25, 377, 600
HincII GTYRAC 1 cut(s) 231
HindII GTYRAC 1 cut(s) 231
HinfI GANTC 1 cut(s) 581
HpaII CCGG 3 cut(s) 209, 292, 296
Hpy166II GTNNAC 3 cut(s) 231, 432, 602
Hpy188III TCNNGA 1 cut(s) 276
Hpy8I GTNNAC 3 cut(s) 231, 432, 602
Hpy99I CGWCG 1 cut(s) 166
HpyAV CCTTC 3 cut(s) 40, 356, 418
HpyCH4III ACNGT 2 cut(s) 64, 73
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 5 cut(s) 13, 114, 147, 373, 493
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 313
HpyF3I CTNAG 4 cut(s) 312, 384, 579, 647
HpySE526I ACGT 1 cut(s) 183
Hsp92II CATG 4 cut(s) 17, 25, 377, 600
Ksp22I TGATCA 1 cut(s) 66
Kzo9I GATC 4 cut(s) 55, 66, 106, 684
Lsp1109I GCAGC 2 cut(s) 319, 477
MaeI CTAG 2 cut(s) 98, 694
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 3 cut(s) 379, 469, 589
MalI GATC 4 cut(s) 57, 68, 108, 686
MboI GATC 4 cut(s) 55, 66, 106, 684
MboII GAAGA 2 cut(s) 516, 611
MflI RGATCY 1 cut(s) 55
MhlI GDGCHC 2 cut(s) 350, 408
MluCI AATT 8 cut(s) 30, 76, 223, 338, 519, 523, 567, 572
MlyI GAGTC 1 cut(s) 590
MmeI TCCRAC 1 cut(s) 657
MnlI CCTC 3 cut(s) 10, 143, 268
MseI TTAA 1 cut(s) 522
MspI CCGG 3 cut(s) 209, 292, 296
MspR9I CCNGG 2 cut(s) 38, 542
MvaI CCWGG 2 cut(s) 38, 542
MwoI GCNNNNNNNGC 2 cut(s) 47, 313
NdeII GATC 4 cut(s) 55, 66, 106, 684
NlaIII CATG 4 cut(s) 17, 25, 377, 600
NmuCI GTSAC 1 cut(s) 379
NspI RCATGY 1 cut(s) 600
PceI AGGCCT 1 cut(s) 366
PkrI GCNGC 2 cut(s) 309, 492
PleI GAGTC 1 cut(s) 589
PpsI GAGTC 1 cut(s) 589
Ppu21I YACGTR 1 cut(s) 184
PshBI ATTAAT 1 cut(s) 522
Psp124BI GAGCTC 1 cut(s) 408
Psp6I CCWGG 2 cut(s) 36, 540
PspGI CCWGG 2 cut(s) 36, 540
PspPI GGNCC 1 cut(s) 457
PsuI RGATCY 1 cut(s) 55
RsaI GTAC 1 cut(s) 634
RsaNI GTAC 1 cut(s) 633
SacI GAGCTC 1 cut(s) 408
SaqAI TTAA 1 cut(s) 522
SatI GCNGC 2 cut(s) 308, 491
Sau3AI GATC 4 cut(s) 55, 66, 106, 684
Sau96I GGNCC 1 cut(s) 457
SchI GAGTC 1 cut(s) 590
ScrFI CCNGG 2 cut(s) 38, 542
SduI GDGCHC 2 cut(s) 350, 408
SetI ASST 9 cut(s) 186, 221, 390, 402, 408, 429, 462, 538, 695
SinI GGWCC 1 cut(s) 457
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
SnaBI TACGTA 1 cut(s) 184
Sse9I AATT 8 cut(s) 30, 76, 223, 338, 519, 523, 567, 572
SseBI AGGCCT 1 cut(s) 366
SsiI CCGC 1 cut(s) 594
SspMI CTAG 2 cut(s) 98, 694
SstI GAGCTC 1 cut(s) 408
StuI AGGCCT 1 cut(s) 366
StyD4I CCNGG 2 cut(s) 36, 540
TaaI ACNGT 2 cut(s) 64, 73
TaiI ACGT 1 cut(s) 186
TaqI TCGA 1 cut(s) 161
TasI AATT 8 cut(s) 30, 76, 223, 338, 519, 523, 567, 572
Tru1I TTAA 1 cut(s) 522
Tru9I TTAA 1 cut(s) 522
TscAI CASTG 1 cut(s) 76
TseFI GTSAC 1 cut(s) 379
TseI GCWGC 2 cut(s) 307, 490
Tsp45I GTSAC 1 cut(s) 379
TspDTI ATGAA 2 cut(s) 369, 528
TspGWI ACGGA 1 cut(s) 179
TspRI CASTG 1 cut(s) 76
VpaK11BI GGWCC 1 cut(s) 457
VspI ATTAAT 1 cut(s) 522
XapI RAATTY 2 cut(s) 223, 338
XceI RCATGY 1 cut(s) 600
XmiI GTMKAC 1 cut(s) 431
XspI CTAG 2 cut(s) 98, 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.