Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002456

Physical Location & Seq

Genomic Coordinates Reverse (-)

15619206 .. 15620156

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G37190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCCGCCAAAGTTGGATCCGAGTCAGATCGTTGACGTGTACGTCCGAGTAACCGGGGGAGAAGTCGGAGCAGCGAGTTCTCTAGCTCCCAAAATCGGTCCGCTAGGTCTCGCACCAAAGAAGATCGGAGAAGATATCGCGAAAGAAACCGCAAAGGAATGGAAAGGATTACGTGTAACCGTCAAGCTCACAGTGCAGAATCGTCAGGCGAAAGTGACGGTGGTTCCATCAGCAGCAGCACTCGTCATCAAGGCGTTGAAAGAGCCGGAGAGAGATAGGAAGAAGGTGAAGAACATTAAGCATAACGGGAACATCTCGTTTGATGATGTGACTGAGATTGCTAGGATCATGAGACCTAGATCTATTGCTAAGGAATTGAGTGGAACAGTGAGGGAGATTCTGGGAACTTGTGTGTCTGTTGGTTGTACTGTGGATGGGAAAGATCCTAAAGATATTCAACAGGAGATTCAAGATGGTGAAGTTGAGATTCCTGAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

166

Amino Acids

17.94

Weight (kDa)

9.05

Isoelectric Point (pI)

33.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L11_N	PF03946	13 - 70	6.5e-19	Ribosomal protein L11, N-terminal domain
Ribosomal_L11	PF00298	75 - 144	1.7e-19	Ribosomal protein L11, RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37190 AT3G53430 AT5G60670
fragaria_vesca	FvH4_3g04190 FvH4_3g32230 FvH4_6g15870
malus_domestica	MD03G1118000.v1.1 MD04G1097900.v1.1 MD09G1186500.v1.1 MD11G1136300.v1.1 MD12G1118900.v1.1
prunus_persica	Prupe.6G101700_v2.0.a1 Prupe.6G236800_v2.0.a1
pyrus_communis	pycom02g15580 pycom04g09320 pycom11g11290 pycom12g11750
rosa_chinensis	RchiOBHm_Chr3g0469581 RchiOBHm_Chr5g0058851 RchiOBHm_Chr6g0252151 RchiOBHm_Chr6g0252181
rosa_laevigata	RLG00000024335 RLG00000035256
rosa_multiflora	Rmu_sc0002522.1_g000002 Rmu_sc0005457.1_g000011 Rmu_sc0005703.1_g000005 Rmu_sc0006483.1_g000005 Rmu_sc0039840.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021530 Rroxscaffold_6G00411750
rosa_rugosa	Rorug03G0102700 Rorug05G0319700
rosa_samantha	Rh3AG152000 Rh3BG175700 Rh3DG199800 Rh5AG384500 Rh5BG396300 Rh5CG420200
rosa_wichuraiana	Rw3G014330 Rw5G036220 Rw6G000070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	41
AccII	CGCG	1 cut(s)	140
AciI	CCGC	3 cut(s)	5, 101, 150
AclWI	GGATC	4 cut(s)	11, 24, 353, 437
AfaI	GTAC	2 cut(s)	41, 427
AfiI	CCNNNNNNNGG	1 cut(s)	95
AflIII	ACRYGT	2 cut(s)	36, 172
AgsI	TTSAA	3 cut(s)	259, 458, 470
AjiI	CACGTC	1 cut(s)	37
AluBI	AGCT	2 cut(s)	86, 187
AluI	AGCT	2 cut(s)	86, 187
Alw26I	GTCTC	2 cut(s)	113, 346
AlwI	GGATC	4 cut(s)	11, 24, 353, 437
ApeKI	GCWGC	3 cut(s)	71, 233, 236
AspS9I	GGNCC	1 cut(s)	98
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	298, 488
AvaII	GGWCC	1 cut(s)	98
BamHI	GGATCC	1 cut(s)	16
BbvI	GCAGC	3 cut(s)	83, 245, 248
BccI	CCATC	3 cut(s)	235, 428, 467
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	2 cut(s)	113, 346
BfaI	CTAG	4 cut(s)	83, 104, 342, 357
BglII	AGATCT	1 cut(s)	359
BisI	GCNGC	4 cut(s)	5, 72, 234, 237
BlsI	GCNGC	4 cut(s)	6, 73, 235, 238
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	1 cut(s)	98
BmgBI	CACGTC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	2 cut(s)	18, 225
BmrFI	CCNGG	1 cut(s)	55
Bpu10I	CCTNAGC	1 cut(s)	369
BpuMI	CCSGG	1 cut(s)	55
BsaAI	YACGTR	1 cut(s)	173
BsaI	GGTCTC	2 cut(s)	113, 346
BsaJI	CCNNGG	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	1 cut(s)	439
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMII	CTCAG	2 cut(s)	324, 483
BseXI	GCAGC	3 cut(s)	83, 245, 248
BsgI	GTGCAG	1 cut(s)	215
Bsh1236I	CGCG	1 cut(s)	140
BsiSI	CCGG	2 cut(s)	54, 266
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	2 cut(s)	113, 346
Bso31I	GGTCTC	2 cut(s)	113, 346
Bsp143I	GATC	6 cut(s)	16, 27, 123, 345, 359, 442
Bsp68I	TCGCGA	1 cut(s)	140
BspACI	CCGC	3 cut(s)	5, 101, 150
BspCNI	CTCAG	2 cut(s)	325, 484
BspFNI	CGCG	1 cut(s)	140
BspHI	TCATGA	1 cut(s)	348
BspLI	GGNNCC	2 cut(s)	18, 225
BspPI	GGATC	4 cut(s)	11, 24, 353, 437
BspTNI	GGTCTC	2 cut(s)	113, 346
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	6 cut(s)	16, 27, 123, 345, 359, 442
Bst4CI	ACNGT	5 cut(s)	181, 193, 220, 388, 430
BstBAI	YACGTR	1 cut(s)	173
BstDEI	CTNAG	3 cut(s)	333, 369, 492
BstF5I	GGATG	1 cut(s)	439
BstFNI	CGCG	1 cut(s)	140
BstKTI	GATC	6 cut(s)	19, 30, 126, 348, 362, 445
BstMAI	GTCTC	2 cut(s)	113, 346
BstMBI	GATC	6 cut(s)	16, 27, 123, 345, 359, 442
BstMWI	GCNNNNNNNGC	1 cut(s)	193
BstSCI	CCNGG	1 cut(s)	53
BstUI	CGCG	1 cut(s)	140
BstV1I	GCAGC	3 cut(s)	83, 245, 248
BstX2I	RGATCY	3 cut(s)	16, 359, 442
BstYI	RGATCY	3 cut(s)	16, 359, 442
BtrI	CACGTC	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	439
BtsIMutI	CAGTG	2 cut(s)	198, 393
BtuMI	TCGCGA	1 cut(s)	140
CciI	TCATGA	1 cut(s)	348
Cfr13I	GGNCC	1 cut(s)	98
CpoI	CGGWCCG	1 cut(s)	98
Csp6I	GTAC	2 cut(s)	40, 426
CspI	CGGWCCG	1 cut(s)	98
CviAII	CATG	1 cut(s)	349
CviJI	RGCY	3 cut(s)	86, 187, 265
CviKI_1	RGCY	3 cut(s)	86, 187, 265
CviQI	GTAC	2 cut(s)	40, 426
DdeI	CTNAG	3 cut(s)	333, 369, 492
DpnI	GATC	6 cut(s)	18, 29, 125, 347, 361, 444
DpnII	GATC	6 cut(s)	16, 27, 123, 345, 359, 442
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
Eco31I	GGTCTC	2 cut(s)	113, 346
Eco32I	GATATC	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	98
EcoRV	GATATC	1 cut(s)	136
FaeI	CATG	1 cut(s)	352
FaiI	YATR	2 cut(s)	303, 350
FatI	CATG	1 cut(s)	348
Fnu4HI	GCNGC	4 cut(s)	5, 72, 234, 237
FokI	GGATG	1 cut(s)	446
Fsp4HI	GCNGC	4 cut(s)	5, 72, 234, 237
FspBI	CTAG	4 cut(s)	83, 104, 342, 357
GluI	GCNGC	4 cut(s)	5, 72, 234, 237
HapII	CCGG	2 cut(s)	54, 266
Hin1II	CATG	1 cut(s)	352
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HinfI	GANTC	5 cut(s)	22, 199, 397, 466, 487
HpaII	CCGG	2 cut(s)	54, 266
HphI	GGTGA	2 cut(s)	298, 488
Hpy166II	GTNNAC	2 cut(s)	34, 40
Hpy188I	TCNGA	5 cut(s)	21, 27, 47, 68, 128
Hpy188III	TCNNGA	4 cut(s)	139, 349, 470, 491
Hpy8I	GTNNAC	2 cut(s)	34, 40
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	5 cut(s)	181, 193, 220, 388, 430
HpyCH4IV	ACGT	3 cut(s)	36, 42, 172
HpyCH4V	TGCA	1 cut(s)	196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	193
HpyF3I	CTNAG	3 cut(s)	333, 369, 492
HpySE526I	ACGT	3 cut(s)	36, 42, 172
Hsp92II	CATG	1 cut(s)	352
Kzo9I	GATC	6 cut(s)	16, 27, 123, 345, 359, 442
LmnI	GCTCC	2 cut(s)	68, 91
LpnPI	CCDG	5 cut(s)	67, 191, 279, 386, 446
Lsp1109I	GCAGC	3 cut(s)	83, 245, 248
MaeI	CTAG	4 cut(s)	83, 104, 342, 357
MaeII	ACGT	3 cut(s)	36, 42, 172
MaeIII	GTNAC	4 cut(s)	49, 175, 214, 328
MalI	GATC	6 cut(s)	18, 29, 125, 347, 361, 444
MboI	GATC	6 cut(s)	16, 27, 123, 345, 359, 442
MboII	GAAGA	4 cut(s)	133, 143, 292, 301
MflI	RGATCY	3 cut(s)	16, 359, 442
MluCI	AATT	1 cut(s)	374
MlyI	GAGTC	1 cut(s)	31
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	1 cut(s)	384
MseI	TTAA	1 cut(s)	297
MspI	CCGG	2 cut(s)	54, 266
MspR9I	CCNGG	1 cut(s)	55
MvnI	CGCG	1 cut(s)	140
MwoI	GCNNNNNNNGC	1 cut(s)	193
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	6 cut(s)	16, 27, 123, 345, 359, 442
NlaIII	CATG	1 cut(s)	352
NlaIV	GGNNCC	2 cut(s)	18, 225
NmuCI	GTSAC	2 cut(s)	214, 328
NruI	TCGCGA	1 cut(s)	140
PagI	TCATGA	1 cut(s)	348
PfeI	GAWTC	4 cut(s)	199, 397, 466, 487
PkrI	GCNGC	4 cut(s)	6, 73, 235, 238
PleI	GAGTC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	30
Ppu21I	YACGTR	1 cut(s)	173
PspN4I	GGNNCC	2 cut(s)	18, 225
PspPI	GGNCC	1 cut(s)	98
PsuI	RGATCY	3 cut(s)	16, 359, 442
RruI	TCGCGA	1 cut(s)	140
RsaI	GTAC	2 cut(s)	41, 427
RsaNI	GTAC	2 cut(s)	40, 426
Rsr2I	CGGWCCG	1 cut(s)	98
RsrII	CGGWCCG	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	4 cut(s)	5, 72, 234, 237
Sau3AI	GATC	6 cut(s)	16, 27, 123, 345, 359, 442
Sau96I	GGNCC	1 cut(s)	98
SchI	GAGTC	1 cut(s)	31
ScrFI	CCNGG	1 cut(s)	55
SetI	ASST	8 cut(s)	39, 45, 88, 109, 175, 189, 288, 358
SinI	GGWCC	1 cut(s)	98
Sse9I	AATT	1 cut(s)	374
SsiI	CCGC	3 cut(s)	5, 101, 150
SspMI	CTAG	4 cut(s)	83, 104, 342, 357
StyD4I	CCNGG	1 cut(s)	53
TaaI	ACNGT	5 cut(s)	181, 193, 220, 388, 430
TaiI	ACGT	3 cut(s)	39, 45, 175
TaqII	GACCGA	1 cut(s)	86
TasI	AATT	1 cut(s)	374
TatI	WGTACW	1 cut(s)	425
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	4 cut(s)	199, 397, 466, 487
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	2 cut(s)	198, 393
TseFI	GTSAC	2 cut(s)	214, 328
TseI	GCWGC	3 cut(s)	71, 233, 236
Tsp45I	GTSAC	2 cut(s)	214, 328
TspRI	CASTG	2 cut(s)	198, 393
VpaK11BI	GGWCC	1 cut(s)	98
XspI	CTAG	4 cut(s)	83, 104, 342, 357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.