Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002456

Physical Location & Seq

Genomic Coordinates Reverse (-)

9859898 .. 9860251

Gene Structure 354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g11290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGCCGCCAAAGTTCGATCCCTCACAGGTCGTCGACGTCTACGTCCGAGTCACCGGCGGTGAGGTAGGAGCCGCCAGTTCTCTCGCCCCGAAGATCGGCCCTCTCGGTCTCTCCCCAAAGAAGATCGGAGAAGACATCGCCAAGGAGACCGCCAAGGACTGGAAGGGCCTCCGTGTCACCGTCAAGCTCACCGTCCAGAACAGGCAGGCCAAGGTTTCGGTTGTGCCGTCTGCGGCGGCGCTTGTCATCAAGGCCTTGAAGGAGCCCGAGCGCGATCGATCAAGAAAACCAAGAACATCAAGCACAGCGGCAACATCTCACTGGATGACGTCATTGAGATCGCCAAGGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

118

Amino Acids

12.57

Weight (kDa)

10.48

Isoelectric Point (pI)

45.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L11_N	PF03946	13 - 70	3.7e-20	Ribosomal protein L11, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37190 AT3G53430 AT5G60670
fragaria_vesca	FvH4_3g04190 FvH4_3g32230 FvH4_6g15870
malus_domestica	MD03G1118000.v1.1 MD04G1097900.v1.1 MD09G1186500.v1.1 MD11G1136300.v1.1 MD12G1118900.v1.1
prunus_persica	Prupe.6G101700_v2.0.a1 Prupe.6G236800_v2.0.a1
pyrus_communis	pycom02g15580 pycom04g09320 pycom11g11290 pycom12g11750
rosa_chinensis	RchiOBHm_Chr3g0469581 RchiOBHm_Chr5g0058851 RchiOBHm_Chr6g0252151 RchiOBHm_Chr6g0252181
rosa_laevigata	RLG00000024335 RLG00000035256
rosa_multiflora	Rmu_sc0002522.1_g000002 Rmu_sc0005457.1_g000011 Rmu_sc0005703.1_g000005 Rmu_sc0006483.1_g000005 Rmu_sc0039840.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021530 Rroxscaffold_6G00411750
rosa_rugosa	Rorug03G0102700 Rorug05G0319700
rosa_samantha	Rh3AG152000 Rh3BG175700 Rh3DG199800 Rh5AG384500 Rh5BG396300 Rh5CG420200
rosa_wichuraiana	Rw3G014330 Rw5G036220 Rw6G000070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	41
AatII	GACGTC	2 cut(s)	39, 332
AccB7I	CCANNNNNTGG	1 cut(s)	159
AccI	GTMKAC	2 cut(s)	33, 39
AccII	CGCG	1 cut(s)	273
AciI	CCGC	7 cut(s)	5, 57, 72, 150, 233, 236, 308
AclWI	GGATC	1 cut(s)	11
AcyI	GRCGYC	2 cut(s)	36, 329
AfiI	CCNNNNNNNGG	2 cut(s)	95, 159
AgsI	TTSAA	1 cut(s)	259
AluBI	AGCT	1 cut(s)	187
AluI	AGCT	1 cut(s)	187
Alw26I	GTCTC	2 cut(s)	113, 140
AlwI	GGATC	1 cut(s)	11
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	4 cut(s)	97, 166, 207, 252
AspLEI	GCGC	2 cut(s)	241, 273
AspS9I	GGNCC	2 cut(s)	98, 166
AsuHPI	GGTGA	4 cut(s)	43, 71, 169, 181
AvaI	CYCGRG	1 cut(s)	266
BanII	GRGCYC	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	138
BceAI	ACGGC	1 cut(s)	211
BcoDI	GTCTC	2 cut(s)	113, 140
BfoI	RGCGCY	1 cut(s)	242
BisI	GCNGC	5 cut(s)	5, 72, 234, 237, 309
BlsI	GCNGC	5 cut(s)	6, 73, 235, 238, 310
BmeT110I	CYCGRG	1 cut(s)	266
BmgT120I	GGNCC	2 cut(s)	98, 166
BmiI	GGNNCC	2 cut(s)	70, 264
BpiI	GAAGAC	1 cut(s)	138
Bsa29I	ATCGAT	1 cut(s)	277
BsaHI	GRCGYC	2 cut(s)	36, 329
BsaI	GGTCTC	2 cut(s)	113, 140
BsaJI	CCNNGG	4 cut(s)	141, 153, 210, 344
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 159
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	3 cut(s)	75, 164, 326
BseCI	ATCGAT	1 cut(s)	277
BseDI	CCNNGG	4 cut(s)	141, 153, 210, 344
BseGI	GGATG	1 cut(s)	330
BseLI	CCNNNNNNNGG	2 cut(s)	95, 159
BseNI	ACTGG	3 cut(s)	75, 164, 326
Bsh1236I	CGCG	1 cut(s)	273
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	4 cut(s)	99, 168, 209, 254
BshVI	ATCGAT	1 cut(s)	277
BsiEI	CGRYCG	1 cut(s)	277
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	1 cut(s)	54
BslI	CCNNNNNNNGG	2 cut(s)	95, 159
BsmAI	GTCTC	2 cut(s)	113, 140
BsnI	GGCC	4 cut(s)	99, 168, 209, 254
Bso31I	GGTCTC	2 cut(s)	113, 140
BsoBI	CYCGRG	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp143I	GATC	6 cut(s)	16, 93, 123, 274, 278, 338
BspACI	CCGC	7 cut(s)	5, 57, 72, 150, 233, 236, 308
BspANI	GGCC	4 cut(s)	99, 168, 209, 254
BspDI	ATCGAT	1 cut(s)	277
BspFNI	CGCG	1 cut(s)	273
BspHI	TCATGA	1 cut(s)	350
BspLI	GGNNCC	2 cut(s)	70, 264
BspPI	GGATC	1 cut(s)	11
BspTNI	GGTCTC	2 cut(s)	113, 140
BsrFI	RCCGGY	1 cut(s)	53
BsrI	ACTGG	3 cut(s)	75, 164, 326
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	4 cut(s)	141, 153, 210, 344
BssMI	GATC	6 cut(s)	16, 93, 123, 274, 278, 338
BssNI	GRCGYC	2 cut(s)	36, 329
BssT1I	CCWWGG	4 cut(s)	141, 153, 210, 344
Bst4CI	ACNGT	2 cut(s)	181, 193
BstACI	GRCGYC	2 cut(s)	36, 329
BstC8I	GCNNGC	1 cut(s)	207
BstF5I	GGATG	1 cut(s)	330
BstFNI	CGCG	1 cut(s)	273
BstH2I	RGCGCY	1 cut(s)	242
BstHHI	GCGC	2 cut(s)	241, 273
BstKTI	GATC	6 cut(s)	19, 96, 126, 277, 281, 341
BstMAI	GTCTC	2 cut(s)	113, 140
BstMBI	GATC	6 cut(s)	16, 93, 123, 274, 278, 338
BstMCI	CGRYCG	1 cut(s)	277
BstUI	CGCG	1 cut(s)	273
BstV2I	GAAGAC	1 cut(s)	138
Bsu15I	ATCGAT	1 cut(s)	277
BsuRI	GGCC	4 cut(s)	99, 168, 209, 254
BsuTUI	ATCGAT	1 cut(s)	277
BtgZI	GCGATG	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	330
BtsIMutI	CAGTG	1 cut(s)	319
Cac8I	GCNNGC	1 cut(s)	207
CciI	TCATGA	1 cut(s)	350
CfoI	GCGC	2 cut(s)	241, 273
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	2 cut(s)	98, 166
ClaI	ATCGAT	1 cut(s)	277
CviAII	CATG	1 cut(s)	351
CviJI	RGCY	7 cut(s)	71, 99, 168, 187, 209, 254, 265
CviKI_1	RGCY	7 cut(s)	71, 99, 168, 187, 209, 254, 265
DpnI	GATC	6 cut(s)	18, 95, 125, 276, 280, 340
DpnII	GATC	6 cut(s)	16, 93, 123, 274, 278, 338
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
Eco130I	CCWWGG	4 cut(s)	141, 153, 210, 344
Eco147I	AGGCCT	1 cut(s)	254
Eco24I	GRGCYC	1 cut(s)	267
Eco31I	GGTCTC	2 cut(s)	113, 140
Eco88I	CYCGRG	1 cut(s)	266
EcoO109I	RGGNCCY	1 cut(s)	166
EcoT14I	CCWWGG	4 cut(s)	141, 153, 210, 344
EcoT38I	GRGCYC	1 cut(s)	267
ErhI	CCWWGG	4 cut(s)	141, 153, 210, 344
FaeI	CATG	1 cut(s)	354
FaiI	YATR	1 cut(s)	352
FatI	CATG	1 cut(s)	350
FblI	GTMKAC	2 cut(s)	33, 39
Fnu4HI	GCNGC	5 cut(s)	5, 72, 234, 237, 309
FokI	GGATG	1 cut(s)	337
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	5 cut(s)	5, 72, 234, 237, 309
GlaI	GCGC	2 cut(s)	240, 272
GluI	GCNGC	5 cut(s)	5, 72, 234, 237, 309
HaeII	RGCGCY	1 cut(s)	242
HaeIII	GGCC	4 cut(s)	99, 168, 209, 254
HapII	CCGG	1 cut(s)	54
HhaI	GCGC	2 cut(s)	241, 273
Hin1I	GRCGYC	2 cut(s)	36, 329
Hin1II	CATG	1 cut(s)	354
Hin6I	GCGC	2 cut(s)	239, 271
HinP1I	GCGC	2 cut(s)	239, 271
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HinfI	GANTC	1 cut(s)	48
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	4 cut(s)	43, 71, 169, 181
Hpy166II	GTNNAC	2 cut(s)	34, 40
Hpy188I	TCNGA	2 cut(s)	47, 128
Hpy188III	TCNNGA	3 cut(s)	196, 282, 351
Hpy8I	GTNNAC	2 cut(s)	34, 40
Hpy99I	CGWCG	2 cut(s)	35, 38
HpyAV	CCTTC	2 cut(s)	157, 253
HpyCH4III	ACNGT	2 cut(s)	181, 193
HpyCH4IV	ACGT	3 cut(s)	36, 42, 329
HpySE526I	ACGT	3 cut(s)	36, 42, 329
Hsp92I	GRCGYC	2 cut(s)	36, 329
Hsp92II	CATG	1 cut(s)	354
HspAI	GCGC	2 cut(s)	239, 271
Kzo9I	GATC	6 cut(s)	16, 93, 123, 274, 278, 338
LmnI	GCTCC	2 cut(s)	68, 262
LpnPI	CCDG	8 cut(s)	11, 67, 88, 145, 187, 191, 209, 307
MaeII	ACGT	3 cut(s)	36, 42, 329
MaeIII	GTNAC	2 cut(s)	49, 175
MalI	GATC	6 cut(s)	18, 95, 125, 276, 280, 340
MboI	GATC	6 cut(s)	16, 93, 123, 274, 278, 338
MboII	GAAGA	3 cut(s)	103, 133, 143
MhlI	GDGCHC	1 cut(s)	267
MlyI	GAGTC	1 cut(s)	57
MnlI	CCTC	4 cut(s)	31, 55, 111, 179
MspA1I	CMGCKG	1 cut(s)	308
MspI	CCGG	1 cut(s)	54
MvnI	CGCG	1 cut(s)	273
NdeII	GATC	6 cut(s)	16, 93, 123, 274, 278, 338
NlaIII	CATG	1 cut(s)	354
NlaIV	GGNNCC	2 cut(s)	70, 264
NmuCI	GTSAC	2 cut(s)	49, 175
PagI	TCATGA	1 cut(s)	350
PceI	AGGCCT	1 cut(s)	254
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 224
PflMI	CCANNNNNTGG	1 cut(s)	159
PkrI	GCNGC	5 cut(s)	6, 73, 235, 238, 310
Ple19I	CGATCG	1 cut(s)	277
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
PspN4I	GGNNCC	2 cut(s)	70, 264
PspPI	GGNCC	2 cut(s)	98, 166
PvuI	CGATCG	1 cut(s)	277
SalI	GTCGAC	1 cut(s)	32
SatI	GCNGC	5 cut(s)	5, 72, 234, 237, 309
Sau3AI	GATC	6 cut(s)	16, 93, 123, 274, 278, 338
Sau96I	GGNCC	2 cut(s)	98, 166
SchI	GAGTC	1 cut(s)	57
SduI	GDGCHC	1 cut(s)	267
SetI	ASST	8 cut(s)	30, 39, 45, 66, 189, 216, 332, 350
SgrAI	CRCCGGYG	1 cut(s)	53
SgrDI	CGTCGACG	1 cut(s)	32
SseBI	AGGCCT	1 cut(s)	254
SsiI	CCGC	7 cut(s)	5, 57, 72, 150, 233, 236, 308
StuI	AGGCCT	1 cut(s)	254
StyI	CCWWGG	4 cut(s)	141, 153, 210, 344
TaaI	ACNGT	2 cut(s)	181, 193
TaiI	ACGT	3 cut(s)	39, 45, 332
TaqI	TCGA	3 cut(s)	15, 33, 277
TaqII	GACCGA	1 cut(s)	95
TauI	GCSGC	5 cut(s)	7, 74, 236, 239, 311
TscAI	CASTG	1 cut(s)	326
TseFI	GTSAC	2 cut(s)	49, 175
Tsp45I	GTSAC	2 cut(s)	49, 175
TspGWI	ACGGA	1 cut(s)	161
TspRI	CASTG	1 cut(s)	326
Van91I	CCANNNNNTGG	1 cut(s)	159
XmiI	GTMKAC	2 cut(s)	33, 39
ZraI	GACGTC	2 cut(s)	37, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.