Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002456

Physical Location & Seq

Genomic Coordinates Forward (+)

14154788 .. 14155588

Gene Structure 801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g11750.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGCCGTCTCCGACCTACTGGGCTAAAGTCGGACAAATCGGTGCCCCGTGGATAGCGGGCTTCTTCGACCAACGTCTTTATGACTGGATCACGGGTCTCAAAATGACAATTCCGTCATTCCGTTTGCAGCTCCTCCAAAATCCACACAAAACCCTAGCTGTATATGAACCTCTCTTCAAAAACCACACCGCCGCCGAAGAAGCCATGCCTCCCAAATTCGACCCCTCTCAGGTCGTCGATGTCTACGTCCGAGTCACCGGAGGCGAGGTCGGCGCCGCCAGTTCGCTCGCTCCCAAGATCGGTCCTTTGGGTCTCTCCCCCAAAAAGATCGGAGAAGACATCGCTAAGGAGACTGCCAAGGACTGGAAGGGCCTGAGAGTCACCGTCAAGCTCACCGTGCAGAATCGTCAGGCCAAGGTCTCCGTCGTCCCCTCCGCCGCAGCGCTCGTCATCAAGGCGTTGAAGGAGCCGGAGCGCGACAGGAAGAAGACTAAGAACATCAAGCACAGTGGGAACATTTCGTTGGACGACGTGATCGAGATTGCTAAGGTGATGAGGAACAGGTCCATGGCGAAGGAGTTGGCCGGGACCGTGAAGGAGATTCTGGGCACTTGCGTTTCGGTAGGGTGCACCGTAGATGGCAAGGACCCGAAGGATCTTCAGCAGGAGATTGCCGACGGTGATGTCGAAATTCCCTTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

235

Amino Acids

25.55

Weight (kDa)

9.07

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37190 AT3G53430 AT5G60670
fragaria_vesca	FvH4_3g04190 FvH4_3g32230 FvH4_6g15870
malus_domestica	MD03G1118000.v1.1 MD04G1097900.v1.1 MD09G1186500.v1.1 MD11G1136300.v1.1 MD12G1118900.v1.1
prunus_persica	Prupe.6G101700_v2.0.a1 Prupe.6G236800_v2.0.a1
pyrus_communis	pycom02g15580 pycom04g09320 pycom11g11290 pycom12g11750
rosa_chinensis	RchiOBHm_Chr3g0469581 RchiOBHm_Chr5g0058851 RchiOBHm_Chr6g0252151 RchiOBHm_Chr6g0252181
rosa_laevigata	RLG00000024335 RLG00000035256
rosa_multiflora	Rmu_sc0002522.1_g000002 Rmu_sc0005457.1_g000011 Rmu_sc0005703.1_g000005 Rmu_sc0006483.1_g000005 Rmu_sc0039840.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021530 Rroxscaffold_6G00411750
rosa_rugosa	Rorug03G0102700 Rorug05G0319700
rosa_samantha	Rh3AG152000 Rh3BG175700 Rh3DG199800 Rh5AG384500 Rh5BG396300 Rh5CG420200
rosa_wichuraiana	Rw3G014330 Rw5G036220 Rw6G000070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	112, 683
AccB1I	GGYRCC	2 cut(s)	41, 272
AccB7I	CCANNNNNTGG	1 cut(s)	363
AccI	GTMKAC	1 cut(s)	243
AccII	CGCG	1 cut(s)	477
AciI	CCGC	6 cut(s)	56, 189, 192, 276, 435, 438
AclWI	GGATC	2 cut(s)	95, 663
AcoI	YGGCCR	1 cut(s)	582
AcsI	RAATTY	2 cut(s)	215, 690
AcuI	CTGAAG	1 cut(s)	644
AcyI	GRCGYC	1 cut(s)	273
AfeI	AGCGCT	1 cut(s)	444
AfiI	CCNNNNNNNGG	3 cut(s)	229, 299, 363
AgsI	TTSAA	2 cut(s)	178, 463
AjiI	CACGTC	1 cut(s)	532
AjuI	GAANNNNNNNTTGG	2 cut(s)	506, 538
AluBI	AGCT	3 cut(s)	130, 158, 391
AluI	AGCT	3 cut(s)	130, 158, 391
Alw21I	GWGCWC	1 cut(s)	632
Alw26I	GTCTC	5 cut(s)	12, 101, 317, 344, 424
Alw44I	GTGCAC	1 cut(s)	628
AlwI	GGATC	2 cut(s)	95, 663
Aor51HI	AGCGCT	1 cut(s)	444
AoxI	GGCC	3 cut(s)	370, 411, 582
ApaLI	GTGCAC	1 cut(s)	628
ApeKI	GCWGC	2 cut(s)	127, 440
ApoI	RAATTY	2 cut(s)	215, 690
AspLEI	GCGC	3 cut(s)	275, 445, 477
AspS9I	GGNCC	5 cut(s)	302, 370, 564, 588, 646
AsuC2I	CCSGG	1 cut(s)	586
AsuHPI	GGTGA	5 cut(s)	247, 373, 385, 562, 692
AvaII	GGWCC	4 cut(s)	302, 564, 588, 646
BaeGI	GKGCMC	3 cut(s)	46, 611, 632
BanI	GGYRCC	2 cut(s)	41, 272
BbsI	GAAGAC	2 cut(s)	342, 494
Bbv12I	GWGCWC	1 cut(s)	632
BbvI	GCAGC	2 cut(s)	139, 452
BccI	CCATC	1 cut(s)	632
BcnI	CCSGG	1 cut(s)	586
BcoDI	GTCTC	5 cut(s)	12, 101, 317, 344, 424
BfaI	CTAG	1 cut(s)	155
BfoI	RGCGCY	2 cut(s)	276, 446
BisI	GCNGC	5 cut(s)	128, 192, 276, 438, 441
BlsI	GCNGC	5 cut(s)	129, 193, 277, 439, 442
Bme1390I	CCNGG	1 cut(s)	586
Bme18I	GGWCC	4 cut(s)	302, 564, 588, 646
BmgBI	CACGTC	1 cut(s)	532
BmgT120I	GGNCC	5 cut(s)	302, 370, 564, 588, 646
BmiI	GGNNCC	5 cut(s)	43, 274, 468, 589, 648
BmrFI	CCNGG	1 cut(s)	586
BmrI	ACTGGG	1 cut(s)	28
BmuI	ACTGGG	1 cut(s)	28
BoxI	GACNNNNGTC	1 cut(s)	72
BpiI	GAAGAC	2 cut(s)	342, 494
Bpu10I	CCTNAGC	2 cut(s)	345, 546
BpuMI	CCSGG	1 cut(s)	586
BsaHI	GRCGYC	1 cut(s)	273
BsaI	GGTCTC	3 cut(s)	101, 317, 424
BsaJI	CCNNGG	5 cut(s)	47, 357, 414, 567, 696
BsaWI	WCCGGW	1 cut(s)	257
BsaXI	ACNNNNNCTCC	2 cut(s)	252, 282
Bsc4I	CCNNNNNNNGG	3 cut(s)	229, 299, 363
Bse1I	ACTGG	4 cut(s)	23, 89, 279, 368
BseDI	CCNNGG	5 cut(s)	47, 357, 414, 567, 696
BseLI	CCNNNNNNNGG	3 cut(s)	229, 299, 363
BseMII	CTCAG	2 cut(s)	242, 365
BseNI	ACTGG	4 cut(s)	23, 89, 279, 368
BseRI	GAGGAG	1 cut(s)	122
BseSI	GKGCMC	3 cut(s)	46, 611, 632
BseXI	GCAGC	2 cut(s)	139, 452
BsgI	GTGCAG	1 cut(s)	419
Bsh1236I	CGCG	1 cut(s)	477
BshFI	GGCC	3 cut(s)	372, 413, 584
BshNI	GGYRCC	2 cut(s)	41, 272
BsiHKAI	GWGCWC	1 cut(s)	632
BsiSI	CCGG	3 cut(s)	258, 470, 585
BslFI	GGGAC	2 cut(s)	413, 601
BslI	CCNNNNNNNGG	3 cut(s)	229, 299, 363
BsmAI	GTCTC	5 cut(s)	12, 101, 317, 344, 424
BsmBI	CGTCTC	1 cut(s)	12
BsmFI	GGGAC	2 cut(s)	413, 601
BsnI	GGCC	3 cut(s)	372, 413, 584
Bso31I	GGTCTC	3 cut(s)	101, 317, 424
Bsp1286I	GDGCHC	3 cut(s)	46, 611, 632
Bsp143I	GATC	5 cut(s)	87, 297, 327, 534, 655
Bsp19I	CCATGG	1 cut(s)	567
BspACI	CCGC	6 cut(s)	56, 189, 192, 276, 435, 438
BspANI	GGCC	3 cut(s)	372, 413, 584
BspCNI	CTCAG	2 cut(s)	241, 366
BspFNI	CGCG	1 cut(s)	477
BspLI	GGNNCC	5 cut(s)	43, 274, 468, 589, 648
BspPI	GGATC	2 cut(s)	95, 663
BspT107I	GGYRCC	2 cut(s)	41, 272
BspTNI	GGTCTC	3 cut(s)	101, 317, 424
BsrI	ACTGG	4 cut(s)	23, 89, 279, 368
BssECI	CCNNGG	5 cut(s)	47, 357, 414, 567, 696
BssMI	GATC	5 cut(s)	87, 297, 327, 534, 655
BssNI	GRCGYC	1 cut(s)	273
BssT1I	CCWWGG	4 cut(s)	357, 414, 567, 696
Bst4CI	ACNGT	6 cut(s)	385, 397, 509, 592, 634, 680
Bst6I	CTCTTC	1 cut(s)	179
BstACI	GRCGYC	1 cut(s)	273
BstC8I	GCNNGC	2 cut(s)	58, 288
BstDEI	CTNAG	5 cut(s)	228, 345, 374, 492, 546
BstDSI	CCRYGG	2 cut(s)	47, 567
BstFNI	CGCG	1 cut(s)	477
BstH2I	RGCGCY	2 cut(s)	276, 446
BstHHI	GCGC	3 cut(s)	275, 445, 477
BstKTI	GATC	5 cut(s)	90, 300, 330, 537, 658
BstMAI	GTCTC	5 cut(s)	12, 101, 317, 344, 424
BstMBI	GATC	5 cut(s)	87, 297, 327, 534, 655
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 270, 397
BstPAI	GACNNNNGTC	1 cut(s)	72
BstSCI	CCNGG	1 cut(s)	584
BstSLI	GKGCMC	3 cut(s)	46, 611, 632
BstUI	CGCG	1 cut(s)	477
BstV1I	GCAGC	2 cut(s)	139, 452
BstV2I	GAAGAC	2 cut(s)	342, 494
BstX2I	RGATCY	1 cut(s)	655
BstYI	RGATCY	1 cut(s)	655
BsuRI	GGCC	3 cut(s)	372, 413, 584
BtgI	CCRYGG	2 cut(s)	47, 567
BtgZI	GCGATG	1 cut(s)	325
BtrI	CACGTC	1 cut(s)	532
BtsIMutI	CAGTG	1 cut(s)	514
Cac8I	GCNNGC	2 cut(s)	58, 288
CfoI	GCGC	3 cut(s)	275, 445, 477
Cfr13I	GGNCC	5 cut(s)	302, 370, 564, 588, 646
CspCI	CAANNNNNGTGG	2 cut(s)	490, 525
CviAII	CATG	2 cut(s)	205, 568
DdeI	CTNAG	5 cut(s)	228, 345, 374, 492, 546
DinI	GGCGCC	1 cut(s)	274
DpnI	GATC	5 cut(s)	89, 299, 329, 536, 657
DpnII	GATC	5 cut(s)	87, 297, 327, 534, 655
DrdI	GACNNNNNNGTC	2 cut(s)	112, 683
DseDI	GACNNNNNNGTC	2 cut(s)	112, 683
EaeI	YGGCCR	1 cut(s)	582
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
EciI	GGCGGA	1 cut(s)	424
Eco130I	CCWWGG	4 cut(s)	357, 414, 567, 696
Eco31I	GGTCTC	3 cut(s)	101, 317, 424
Eco47I	GGWCC	4 cut(s)	302, 564, 588, 646
Eco47III	AGCGCT	1 cut(s)	444
Eco57I	CTGAAG	1 cut(s)	644
EcoO109I	RGGNCCY	2 cut(s)	370, 646
EcoT14I	CCWWGG	4 cut(s)	357, 414, 567, 696
EgeI	GGCGCC	1 cut(s)	274
EheI	GGCGCC	1 cut(s)	274
ErhI	CCWWGG	4 cut(s)	357, 414, 567, 696
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	2 cut(s)	208, 571
FaiI	YATR	5 cut(s)	81, 163, 165, 206, 569
FaqI	GGGAC	2 cut(s)	413, 601
FatI	CATG	2 cut(s)	204, 567
FauI	CCCGC	1 cut(s)	49
FblI	GTMKAC	1 cut(s)	243
Fnu4HI	GCNGC	5 cut(s)	128, 192, 276, 438, 441
Fsp4HI	GCNGC	5 cut(s)	128, 192, 276, 438, 441
FspBI	CTAG	1 cut(s)	155
GlaI	GCGC	3 cut(s)	274, 444, 476
GluI	GCNGC	5 cut(s)	128, 192, 276, 438, 441
HaeII	RGCGCY	2 cut(s)	276, 446
HaeIII	GGCC	3 cut(s)	372, 413, 584
HapII	CCGG	3 cut(s)	258, 470, 585
HhaI	GCGC	3 cut(s)	275, 445, 477
Hin1I	GRCGYC	1 cut(s)	273
Hin1II	CATG	2 cut(s)	208, 571
Hin6I	GCGC	3 cut(s)	273, 443, 475
HinP1I	GCGC	3 cut(s)	273, 443, 475
HinfI	GANTC	4 cut(s)	252, 378, 403, 601
HpaII	CCGG	3 cut(s)	258, 470, 585
HphI	GGTGA	5 cut(s)	247, 373, 385, 562, 692
Hpy166II	GTNNAC	2 cut(s)	244, 630
Hpy188I	TCNGA	4 cut(s)	12, 32, 251, 332
Hpy188III	TCNNGA	1 cut(s)	538
Hpy8I	GTNNAC	2 cut(s)	244, 630
Hpy99I	CGWCG	4 cut(s)	239, 428, 533, 680
HpyAV	CCTTC	5 cut(s)	361, 457, 568, 589, 646
HpyCH4III	ACNGT	6 cut(s)	385, 397, 509, 592, 634, 680
HpyCH4IV	ACGT	3 cut(s)	73, 246, 531
HpyCH4V	TGCA	3 cut(s)	127, 400, 630
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 270, 397
HpyF3I	CTNAG	5 cut(s)	228, 345, 374, 492, 546
HpySE526I	ACGT	3 cut(s)	73, 246, 531
Hsp92I	GRCGYC	1 cut(s)	273
Hsp92II	CATG	2 cut(s)	208, 571
HspAI	GCGC	3 cut(s)	273, 443, 475
KasI	GGCGCC	1 cut(s)	272
Kzo9I	GATC	5 cut(s)	87, 297, 327, 534, 655
LmnI	GCTCC	4 cut(s)	135, 295, 466, 472
Lsp1109I	GCAGC	2 cut(s)	139, 452
MaeI	CTAG	1 cut(s)	155
MaeII	ACGT	3 cut(s)	73, 246, 531
MaeIII	GTNAC	2 cut(s)	253, 379
MalI	GATC	5 cut(s)	89, 299, 329, 536, 657
MboI	GATC	5 cut(s)	87, 297, 327, 534, 655
MboII	GAAGA	7 cut(s)	55, 166, 209, 347, 496, 499, 650
MflI	RGATCY	1 cut(s)	655
MhlI	GDGCHC	3 cut(s)	46, 611, 632
MluCI	AATT	3 cut(s)	108, 215, 690
Mly113I	GGCGCC	1 cut(s)	273
MlyI	GAGTC	2 cut(s)	261, 387
MmeI	TCCRAC	3 cut(s)	10, 35, 504
MnlI	CCTC	8 cut(s)	143, 180, 219, 235, 254, 259, 442, 549
MspI	CCGG	3 cut(s)	258, 470, 585
MspR9I	CCNGG	1 cut(s)	586
MvnI	CGCG	1 cut(s)	477
MwoI	GCNNNNNNNGC	3 cut(s)	200, 270, 397
NarI	GGCGCC	1 cut(s)	273
NciI	CCSGG	1 cut(s)	586
NcoI	CCATGG	1 cut(s)	567
NdeII	GATC	5 cut(s)	87, 297, 327, 534, 655
NlaIII	CATG	2 cut(s)	208, 571
NlaIV	GGNNCC	5 cut(s)	43, 274, 468, 589, 648
NmuCI	GTSAC	2 cut(s)	253, 379
PcsI	WCGNNNNNNNCGW	3 cut(s)	243, 534, 684
PfeI	GAWTC	2 cut(s)	403, 601
PflMI	CCANNNNNTGG	1 cut(s)	363
PkrI	GCNGC	5 cut(s)	129, 193, 277, 439, 442
PleI	GAGTC	2 cut(s)	260, 386
PluTI	GGCGCC	1 cut(s)	276
PpsI	GAGTC	2 cut(s)	260, 386
PpuMI	RGGWCCY	1 cut(s)	646
PshAI	GACNNNNGTC	1 cut(s)	72
Psp5II	RGGWCCY	1 cut(s)	646
PspN4I	GGNNCC	5 cut(s)	43, 274, 468, 589, 648
PspPI	GGNCC	5 cut(s)	302, 370, 564, 588, 646
PspPPI	RGGWCCY	1 cut(s)	646
PsuI	RGATCY	1 cut(s)	655
SatI	GCNGC	5 cut(s)	128, 192, 276, 438, 441
Sau3AI	GATC	5 cut(s)	87, 297, 327, 534, 655
Sau96I	GGNCC	5 cut(s)	302, 370, 564, 588, 646
SchI	GAGTC	2 cut(s)	261, 387
ScrFI	CCNGG	1 cut(s)	586
SduI	GDGCHC	3 cut(s)	46, 611, 632
SfoI	GGCGCC	1 cut(s)	274
SinI	GGWCC	4 cut(s)	302, 564, 588, 646
Sse9I	AATT	3 cut(s)	108, 215, 690
SsiI	CCGC	6 cut(s)	56, 189, 192, 276, 435, 438
SspDI	GGCGCC	1 cut(s)	272
SspMI	CTAG	1 cut(s)	155
StyD4I	CCNGG	1 cut(s)	584
StyI	CCWWGG	4 cut(s)	357, 414, 567, 696
TaaI	ACNGT	6 cut(s)	385, 397, 509, 592, 634, 680
TaiI	ACGT	3 cut(s)	76, 249, 534
TaqI	TCGA	5 cut(s)	66, 219, 237, 537, 687
TaqII	GACCGA	1 cut(s)	290
TasI	AATT	3 cut(s)	108, 215, 690
TauI	GCSGC	3 cut(s)	194, 278, 440
TfiI	GAWTC	2 cut(s)	403, 601
TscAI	CASTG	1 cut(s)	514
TseFI	GTSAC	2 cut(s)	253, 379
TseI	GCWGC	2 cut(s)	127, 440
Tsp45I	GTSAC	2 cut(s)	253, 379
TspDTI	ATGAA	1 cut(s)	180
TspGWI	ACGGA	3 cut(s)	102, 110, 412
TspRI	CASTG	1 cut(s)	514
Van91I	CCANNNNNTGG	1 cut(s)	363
VneI	GTGCAC	1 cut(s)	628
VpaK11BI	GGWCC	4 cut(s)	302, 564, 588, 646
XapI	RAATTY	2 cut(s)	215, 690
XmiI	GTMKAC	1 cut(s)	243
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.