Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002456

Physical Location & Seq

Genomic Coordinates Reverse (-)

9909786 .. 9911848

Gene Structure 2063 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g15870.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCCTCCCAAGTTCGACCCTTCCCAGGTCGTCGAGGTCTACGTCCGCGTCACCGGAGGCGAGGTCGGCGCCGCCAGTTCCCTCGCTCCCAAGATCGGTCCTCTCGGTCTCTCCCCCAAGAAGATCGGAGAAGACATCGCCAAGGAGACCGCCAAGGACTGGAAGGGCCTCCGCGTCACCGTCAAGCTCACCGTCCAGAACCGTCAGGCCAAGGTCTCCGTCGTCCCTTCCGCCGCTGCTCTGGTCATCAAGGCCCTCAAGGAGCCCGAGCGCGACCGGAAGAAGACAAAGAACATCAAGCACACCGGCAACATCAGCCTTGATGATGTGATCGAGATCGCGAAGATCATGAAGAACAGGTCTATGGCGAAGGACCTGAGCGGCACTGTGAAGGAGATCCTCGGGACTTGTGTTTCGGTTGGGTGTACTGTGGATGGGAAGGACCCCAAGGACTTGCAGCAGGAGATCACCGACGGAGACGTTGAGGTTCCTCTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

167

Amino Acids

17.8

Weight (kDa)

9.0

Isoelectric Point (pI)

39.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L11_N	PF03946	13 - 70	8.4e-20	Ribosomal protein L11, N-terminal domain
Ribosomal_L11	PF00298	75 - 144	4.3e-21	Ribosomal protein L11, RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37190 AT3G53430 AT5G60670
fragaria_vesca	FvH4_3g04190 FvH4_3g32230 FvH4_6g15870
malus_domestica	MD03G1118000.v1.1 MD04G1097900.v1.1 MD09G1186500.v1.1 MD11G1136300.v1.1 MD12G1118900.v1.1
prunus_persica	Prupe.6G101700_v2.0.a1 Prupe.6G236800_v2.0.a1
pyrus_communis	pycom02g15580 pycom04g09320 pycom11g11290 pycom12g11750
rosa_chinensis	RchiOBHm_Chr3g0469581 RchiOBHm_Chr5g0058851 RchiOBHm_Chr6g0252151 RchiOBHm_Chr6g0252181
rosa_laevigata	RLG00000024335 RLG00000035256
rosa_multiflora	Rmu_sc0002522.1_g000002 Rmu_sc0005457.1_g000011 Rmu_sc0005703.1_g000005 Rmu_sc0006483.1_g000005 Rmu_sc0039840.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021530 Rroxscaffold_6G00411750
rosa_rugosa	Rorug03G0102700 Rorug05G0319700
rosa_samantha	Rh3AG152000 Rh3BG175700 Rh3DG199800 Rh5AG384500 Rh5BG396300 Rh5CG420200
rosa_wichuraiana	Rw3G014330 Rw5G036220 Rw6G000070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	68
AccB7I	CCANNNNNTGG	1 cut(s)	159
AccBSI	CCGCTC	1 cut(s)	381
AccI	GTMKAC	1 cut(s)	39
AccII	CGCG	4 cut(s)	48, 174, 273, 341
AciI	CCGC	7 cut(s)	46, 72, 150, 172, 231, 234, 381
AclWI	GGATC	1 cut(s)	391
AcyI	GRCGYC	1 cut(s)	69
AfaI	GTAC	1 cut(s)	427
AfiI	CCNNNNNNNGG	3 cut(s)	25, 95, 159
AjnI	CCWGG	1 cut(s)	24
AluBI	AGCT	1 cut(s)	187
AluI	AGCT	1 cut(s)	187
Alw26I	GTCTC	4 cut(s)	113, 140, 220, 471
AlwI	GGATC	1 cut(s)	391
Ama87I	CYCGRG	2 cut(s)	266, 401
AoxI	GGCC	3 cut(s)	166, 207, 252
ApeKI	GCWGC	2 cut(s)	236, 457
ArsI	GACNNNNNNTTYG	2 cut(s)	397, 429
AspLEI	GCGC	2 cut(s)	71, 273
AspS9I	GGNCC	5 cut(s)	98, 166, 253, 373, 442
AsuHPI	GGTGA	4 cut(s)	43, 169, 181, 460
AvaI	CYCGRG	2 cut(s)	266, 401
AvaII	GGWCC	3 cut(s)	98, 373, 442
BanI	GGYRCC	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	267
BbsI	GAAGAC	2 cut(s)	138, 290
BbvI	GCAGC	2 cut(s)	223, 469
BccI	CCATC	1 cut(s)	428
BciT130I	CCWGG	1 cut(s)	26
BcoDI	GTCTC	4 cut(s)	113, 140, 220, 471
BfoI	RGCGCY	1 cut(s)	72
BisI	GCNGC	5 cut(s)	72, 234, 237, 382, 458
BlsI	GCNGC	5 cut(s)	73, 235, 238, 383, 459
Bme1390I	CCNGG	1 cut(s)	26
Bme18I	GGWCC	3 cut(s)	98, 373, 442
BmeT110I	CYCGRG	2 cut(s)	266, 401
BmgT120I	GGNCC	5 cut(s)	98, 166, 253, 373, 442
BmiI	GGNNCC	4 cut(s)	70, 264, 444, 489
BmrFI	CCNGG	1 cut(s)	26
BpiI	GAAGAC	2 cut(s)	138, 290
Bpu10I	CCTNAGC	1 cut(s)	377
BpuEI	CTTGAG	1 cut(s)	242
BsaBI	GATNNNNATC	1 cut(s)	335
BsaHI	GRCGYC	1 cut(s)	69
BsaI	GGTCTC	3 cut(s)	113, 140, 220
BsaJI	CCNNGG	6 cut(s)	24, 141, 153, 210, 400, 447
BsaWI	WCCGGW	2 cut(s)	53, 276
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 95, 159
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	2 cut(s)	75, 164
Bse8I	GATNNNNATC	1 cut(s)	335
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	6 cut(s)	24, 141, 153, 210, 400, 447
BseGI	GGATG	1 cut(s)	439
BseJI	GATNNNNATC	1 cut(s)	335
BseLI	CCNNNNNNNGG	3 cut(s)	25, 95, 159
BseMII	CTCAG	1 cut(s)	368
BseNI	ACTGG	2 cut(s)	75, 164
BseXI	GCAGC	2 cut(s)	223, 469
Bsh1236I	CGCG	4 cut(s)	48, 174, 273, 341
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	3 cut(s)	168, 209, 254
BshNI	GGYRCC	1 cut(s)	68
BsiEI	CGRYCG	1 cut(s)	277
BsiHKCI	CYCGRG	2 cut(s)	266, 401
BsiSI	CCGG	3 cut(s)	54, 277, 306
BslFI	GGGAC	2 cut(s)	209, 418
BslI	CCNNNNNNNGG	3 cut(s)	25, 95, 159
BsmAI	GTCTC	4 cut(s)	113, 140, 220, 471
BsmBI	CGTCTC	1 cut(s)	471
BsmFI	GGGAC	2 cut(s)	209, 418
BsnI	GGCC	3 cut(s)	168, 209, 254
Bso31I	GGTCTC	3 cut(s)	113, 140, 220
BsoBI	CYCGRG	2 cut(s)	266, 401
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp143I	GATC	7 cut(s)	93, 123, 330, 336, 345, 396, 465
Bsp68I	TCGCGA	1 cut(s)	341
BspACI	CCGC	7 cut(s)	46, 72, 150, 172, 231, 234, 381
BspANI	GGCC	3 cut(s)	168, 209, 254
BspCNI	CTCAG	1 cut(s)	369
BspFNI	CGCG	4 cut(s)	48, 174, 273, 341
BspHI	TCATGA	1 cut(s)	348
BspLI	GGNNCC	4 cut(s)	70, 264, 444, 489
BspPI	GGATC	1 cut(s)	391
BspT107I	GGYRCC	1 cut(s)	68
BspTNI	GGTCTC	3 cut(s)	113, 140, 220
BsrBI	CCGCTC	1 cut(s)	381
BsrFI	RCCGGY	1 cut(s)	305
BsrI	ACTGG	2 cut(s)	75, 164
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	6 cut(s)	24, 141, 153, 210, 400, 447
BssMI	GATC	7 cut(s)	93, 123, 330, 336, 345, 396, 465
BssNI	GRCGYC	1 cut(s)	69
BssT1I	CCWWGG	4 cut(s)	141, 153, 210, 447
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	5 cut(s)	181, 193, 203, 388, 430
BstACI	GRCGYC	1 cut(s)	69
BstDEI	CTNAG	1 cut(s)	377
BstF5I	GGATG	1 cut(s)	439
BstFNI	CGCG	4 cut(s)	48, 174, 273, 341
BstH2I	RGCGCY	1 cut(s)	72
BstHHI	GCGC	2 cut(s)	71, 273
BstKTI	GATC	7 cut(s)	96, 126, 333, 339, 348, 399, 468
BstMAI	GTCTC	4 cut(s)	113, 140, 220, 471
BstMBI	GATC	7 cut(s)	93, 123, 330, 336, 345, 396, 465
BstMCI	CGRYCG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 315
BstNI	CCWGG	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	24
BstUI	CGCG	4 cut(s)	48, 174, 273, 341
BstV1I	GCAGC	2 cut(s)	223, 469
BstV2I	GAAGAC	2 cut(s)	138, 290
BstX2I	RGATCY	1 cut(s)	396
BstYI	RGATCY	1 cut(s)	396
BsuRI	GGCC	3 cut(s)	168, 209, 254
BtgZI	GCGATG	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	439
BtsIMutI	CAGTG	1 cut(s)	384
BtuMI	TCGCGA	1 cut(s)	341
CciI	TCATGA	1 cut(s)	348
CfoI	GCGC	2 cut(s)	71, 273
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	5 cut(s)	98, 166, 253, 373, 442
CseI	GACGC	2 cut(s)	37, 163
Csp6I	GTAC	1 cut(s)	426
CviAII	CATG	1 cut(s)	349
CviJI	RGCY	6 cut(s)	168, 187, 209, 254, 265, 318
CviKI_1	RGCY	6 cut(s)	168, 187, 209, 254, 265, 318
CviQI	GTAC	1 cut(s)	426
DdeI	CTNAG	1 cut(s)	377
DinI	GGCGCC	1 cut(s)	70
DpnI	GATC	7 cut(s)	95, 125, 332, 338, 347, 398, 467
DpnII	GATC	7 cut(s)	93, 123, 330, 336, 345, 396, 465
EciI	GGCGGA	1 cut(s)	220
Eco130I	CCWWGG	4 cut(s)	141, 153, 210, 447
Eco24I	GRGCYC	1 cut(s)	267
Eco31I	GGTCTC	3 cut(s)	113, 140, 220
Eco47I	GGWCC	3 cut(s)	98, 373, 442
Eco88I	CYCGRG	2 cut(s)	266, 401
EcoO109I	RGGNCCY	4 cut(s)	166, 253, 373, 442
EcoRII	CCWGG	1 cut(s)	24
EcoT14I	CCWWGG	4 cut(s)	141, 153, 210, 447
EcoT38I	GRGCYC	1 cut(s)	267
EgeI	GGCGCC	1 cut(s)	70
EheI	GGCGCC	1 cut(s)	70
ErhI	CCWWGG	4 cut(s)	141, 153, 210, 447
Esp3I	CGTCTC	1 cut(s)	471
FaeI	CATG	1 cut(s)	352
FaiI	YATR	2 cut(s)	350, 365
FaqI	GGGAC	2 cut(s)	209, 418
FatI	CATG	1 cut(s)	348
FblI	GTMKAC	1 cut(s)	39
Fnu4HI	GCNGC	5 cut(s)	72, 234, 237, 382, 458
FokI	GGATG	1 cut(s)	446
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	5 cut(s)	72, 234, 237, 382, 458
GlaI	GCGC	2 cut(s)	70, 272
GluI	GCNGC	5 cut(s)	72, 234, 237, 382, 458
HaeII	RGCGCY	1 cut(s)	72
HaeIII	GGCC	3 cut(s)	168, 209, 254
HapII	CCGG	3 cut(s)	54, 277, 306
HgaI	GACGC	2 cut(s)	37, 163
HhaI	GCGC	2 cut(s)	71, 273
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	1 cut(s)	352
Hin6I	GCGC	2 cut(s)	69, 271
HinP1I	GCGC	2 cut(s)	69, 271
HpaII	CCGG	3 cut(s)	54, 277, 306
HphI	GGTGA	4 cut(s)	43, 169, 181, 460
Hpy166II	GTNNAC	2 cut(s)	40, 426
Hpy188I	TCNGA	1 cut(s)	128
Hpy188III	TCNNGA	6 cut(s)	196, 334, 340, 349, 403, 494
Hpy8I	GTNNAC	2 cut(s)	40, 426
Hpy99I	CGWCG	3 cut(s)	35, 224, 476
HpyAV	CCTTC	6 cut(s)	30, 157, 237, 364, 385, 433
HpyCH4III	ACNGT	5 cut(s)	181, 193, 203, 388, 430
HpyCH4IV	ACGT	2 cut(s)	42, 480
HpyCH4V	TGCA	1 cut(s)	457
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 315
HpyF3I	CTNAG	1 cut(s)	377
HpySE526I	ACGT	2 cut(s)	42, 480
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	1 cut(s)	352
HspAI	GCGC	2 cut(s)	69, 271
KasI	GGCGCC	1 cut(s)	68
Kzo9I	GATC	7 cut(s)	93, 123, 330, 336, 345, 396, 465
LmnI	GCTCC	2 cut(s)	91, 262
Lsp1109I	GCAGC	2 cut(s)	223, 469
MaeII	ACGT	2 cut(s)	42, 480
MaeIII	GTNAC	2 cut(s)	49, 175
MalI	GATC	7 cut(s)	95, 125, 332, 338, 347, 398, 467
MbiI	CCGCTC	1 cut(s)	381
MboI	GATC	7 cut(s)	93, 123, 330, 336, 345, 396, 465
MboII	GAAGA	6 cut(s)	133, 143, 292, 295, 355, 364
MflI	RGATCY	1 cut(s)	396
MhlI	GDGCHC	1 cut(s)	267
Mly113I	GGCGCC	1 cut(s)	69
MspA1I	CMGCKG	1 cut(s)	236
MspI	CCGG	3 cut(s)	54, 277, 306
MspR9I	CCNGG	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	26
MvnI	CGCG	4 cut(s)	48, 174, 273, 341
MwoI	GCNNNNNNNGC	2 cut(s)	66, 315
NarI	GGCGCC	1 cut(s)	69
NdeII	GATC	7 cut(s)	93, 123, 330, 336, 345, 396, 465
NlaIII	CATG	1 cut(s)	352
NlaIV	GGNNCC	4 cut(s)	70, 264, 444, 489
NmuCI	GTSAC	2 cut(s)	49, 175
NruI	TCGCGA	1 cut(s)	341
PagI	TCATGA	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PflMI	CCANNNNNTGG	1 cut(s)	159
PkrI	GCNGC	5 cut(s)	73, 235, 238, 383, 459
PluTI	GGCGCC	1 cut(s)	72
PpuMI	RGGWCCY	2 cut(s)	373, 442
Psp5II	RGGWCCY	2 cut(s)	373, 442
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	4 cut(s)	70, 264, 444, 489
PspPI	GGNCC	5 cut(s)	98, 166, 253, 373, 442
PspPPI	RGGWCCY	2 cut(s)	373, 442
PsuI	RGATCY	1 cut(s)	396
RruI	TCGCGA	1 cut(s)	341
RsaI	GTAC	1 cut(s)	427
RsaNI	GTAC	1 cut(s)	426
SatI	GCNGC	5 cut(s)	72, 234, 237, 382, 458
Sau3AI	GATC	7 cut(s)	93, 123, 330, 336, 345, 396, 465
Sau96I	GGNCC	5 cut(s)	98, 166, 253, 373, 442
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	267
SfoI	GGCGCC	1 cut(s)	70
SinI	GGWCC	3 cut(s)	98, 373, 442
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
SsiI	CCGC	7 cut(s)	46, 72, 150, 172, 231, 234, 381
SspDI	GGCGCC	1 cut(s)	68
StyD4I	CCNGG	1 cut(s)	24
StyI	CCWWGG	4 cut(s)	141, 153, 210, 447
TaaI	ACNGT	5 cut(s)	181, 193, 203, 388, 430
TaiI	ACGT	2 cut(s)	45, 483
TaqI	TCGA	3 cut(s)	15, 33, 333
TaqII	GACCGA	2 cut(s)	86, 95
TatI	WGTACW	1 cut(s)	425
TauI	GCSGC	3 cut(s)	74, 236, 384
TscAI	CASTG	1 cut(s)	391
TseFI	GTSAC	2 cut(s)	49, 175
TseI	GCWGC	2 cut(s)	236, 457
Tsp45I	GTSAC	2 cut(s)	49, 175
TspDTI	ATGAA	1 cut(s)	365
TspGWI	ACGGA	2 cut(s)	208, 489
TspRI	CASTG	1 cut(s)	391
Van91I	CCANNNNNTGG	1 cut(s)	159
VpaK11BI	GGWCC	3 cut(s)	98, 373, 442
XmiI	GTMKAC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.