Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002456

Physical Location & Seq

Genomic Coordinates Reverse (-)

127779 .. 131941

Gene Structure 4163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G000070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCGCTAAAGTTGGATCCCTCGCAGGTCGTTGAAGTCTTCGTCCGCTTCACCGGTGGTGAAGTCGGCGCGGCGAGTACCCTGGCTCCCAAGATTGGTCCTCTCGGTCTCTCCCCAAAGAAGATCGCAGAAGACATCACGAAGGAGACAACCAAGGAATGGAAGGGTCTACGTGTCACTGCCAAGGTCACCGTGCAGAACCGTGAGGCCAAGATCTCGGTGGTTCCCTCCACCGCCGCCCTTGTCATCAAGGCCCTCAACCAGCCCGAGCACGACCGCAAGAAGGTCAAGAACGTCAAGCACAGCAGCAGCATCATCAGCCTGGCGGACGTGGAGAAGATAGCCACGATCTTGCAGGCGAGGTCTATGGCGAAAGGCCTGGAAGGCACGATGCGGGAGGTTCTCGGCACGTGCTTGTCCGTCGGCTGCTTGGTGAATGGAAGGTCCCCTCGTGATGTGCAGAAGGAGCTGACCGCCGTCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

161

Amino Acids

17.29

Weight (kDa)

9.73

Isoelectric Point (pI)

25.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L11_N	PF03946	15 - 70	1.3e-16	Ribosomal protein L11, N-terminal domain
Ribosomal_L11	PF00298	75 - 145	4.8e-14	Ribosomal protein L11, RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37190 AT3G53430 AT5G60670
fragaria_vesca	FvH4_3g04190 FvH4_3g32230 FvH4_6g15870
malus_domestica	MD03G1118000.v1.1 MD04G1097900.v1.1 MD09G1186500.v1.1 MD11G1136300.v1.1 MD12G1118900.v1.1
prunus_persica	Prupe.6G101700_v2.0.a1 Prupe.6G236800_v2.0.a1
pyrus_communis	pycom02g15580 pycom04g09320 pycom11g11290 pycom12g11750
rosa_chinensis	RchiOBHm_Chr3g0469581 RchiOBHm_Chr5g0058851 RchiOBHm_Chr6g0252151 RchiOBHm_Chr6g0252181
rosa_laevigata	RLG00000024335 RLG00000035256
rosa_multiflora	Rmu_sc0002522.1_g000002 Rmu_sc0005457.1_g000011 Rmu_sc0005703.1_g000005 Rmu_sc0006483.1_g000005 Rmu_sc0039840.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021530 Rroxscaffold_6G00411750
rosa_rugosa	Rorug03G0102700 Rorug05G0319700
rosa_samantha	Rh3AG152000 Rh3BG175700 Rh3DG199800 Rh5AG384500 Rh5BG396300 Rh5CG420200
rosa_wichuraiana	Rw3G014330 Rw5G036220 Rw6G000070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	16
AccB7I	CCANNNNNTGG	1 cut(s)	159
AccI	GTMKAC	2 cut(s)	169, 480
AccII	CGCG	1 cut(s)	71
AciI	CCGC	8 cut(s)	46, 71, 234, 237, 277, 326, 394, 474
AclWI	GGATC	2 cut(s)	11, 24
AcvI	CACGTG	1 cut(s)	411
AfaI	GTAC	1 cut(s)	79
AfiI	CCNNNNNNNGG	3 cut(s)	95, 159, 283
AflIII	ACRYGT	1 cut(s)	172
AgeI	ACCGGT	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	35
AjiI	CACGTC	1 cut(s)	331
AjnI	CCWGG	3 cut(s)	81, 321, 378
AluBI	AGCT	1 cut(s)	469
AluI	AGCT	1 cut(s)	469
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	2 cut(s)	113, 140
AlwI	GGATC	2 cut(s)	11, 24
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	3 cut(s)	207, 252, 376
ApeKI	GCWGC	3 cut(s)	306, 309, 426
AsiGI	ACCGGT	1 cut(s)	53
AspLEI	GCGC	2 cut(s)	7, 71
AspS9I	GGNCC	3 cut(s)	98, 253, 444
AsuHPI	GGTGA	4 cut(s)	43, 71, 181, 445
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	2 cut(s)	98, 444
BamHI	GGATCC	1 cut(s)	16
BauI	CACGAG	1 cut(s)	450
BbrPI	CACGTG	1 cut(s)	411
BbsI	GAAGAC	2 cut(s)	31, 138
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	3 cut(s)	318, 321, 413
BceAI	ACGGC	1 cut(s)	461
BciT130I	CCWGG	3 cut(s)	83, 323, 380
BcoDI	GTCTC	2 cut(s)	113, 140
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	16
BglI	GCCNNNNNGGC	1 cut(s)	384
BglII	AGATCT	1 cut(s)	213
BisI	GCNGC	5 cut(s)	72, 237, 307, 310, 427
BlsI	GCNGC	5 cut(s)	73, 238, 308, 311, 428
Bme1390I	CCNGG	3 cut(s)	83, 323, 380
Bme18I	GGWCC	2 cut(s)	98, 444
BmeT110I	CYCGRG	1 cut(s)	266
BmgBI	CACGTC	1 cut(s)	331
BmgT120I	GGNCC	3 cut(s)	98, 253, 444
BmiI	GGNNCC	4 cut(s)	18, 87, 225, 446
BmrFI	CCNGG	3 cut(s)	83, 323, 380
BmsI	GCATC	2 cut(s)	321, 381
BoxI	GACNNNNGTC	1 cut(s)	476
BpiI	GAAGAC	2 cut(s)	31, 138
BsaAI	YACGTR	2 cut(s)	173, 411
BsaI	GGTCTC	1 cut(s)	113
BsaJI	CCNNGG	3 cut(s)	81, 153, 183
BsaWI	WCCGGW	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	70, 100
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 159, 283
Bse118I	RCCGGY	1 cut(s)	53
BseBI	CCWGG	3 cut(s)	83, 323, 380
BseDI	CCNNGG	3 cut(s)	81, 153, 183
BseLI	CCNNNNNNNGG	3 cut(s)	95, 159, 283
BseXI	GCAGC	3 cut(s)	318, 321, 413
BsgI	GTGCAG	2 cut(s)	215, 479
Bsh1236I	CGCG	1 cut(s)	71
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	3 cut(s)	209, 254, 378
BshTI	ACCGGT	1 cut(s)	53
BsiEI	CGRYCG	1 cut(s)	277
BsiHKAI	GWGCWC	1 cut(s)	273
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	430
BslI	CCNNNNNNNGG	3 cut(s)	95, 159, 283
BsmAI	GTCTC	2 cut(s)	113, 140
BsmFI	GGGAC	1 cut(s)	430
BsnI	GGCC	3 cut(s)	209, 254, 378
Bso31I	GGTCTC	1 cut(s)	113
BsoBI	CYCGRG	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	4 cut(s)	16, 123, 213, 348
BspACI	CCGC	8 cut(s)	46, 71, 234, 237, 277, 326, 394, 474
BspANI	GGCC	3 cut(s)	209, 254, 378
BspFNI	CGCG	1 cut(s)	71
BspLI	GGNNCC	4 cut(s)	18, 87, 225, 446
BspMI	ACCTGC	1 cut(s)	16
BspPI	GGATC	2 cut(s)	11, 24
BspTNI	GGTCTC	1 cut(s)	113
BsrFI	RCCGGY	1 cut(s)	53
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	3 cut(s)	81, 153, 183
BssMI	GATC	4 cut(s)	16, 123, 213, 348
BssSI	CACGAG	1 cut(s)	450
BssT1I	CCWWGG	2 cut(s)	153, 183
Bst2BI	CACGAG	1 cut(s)	450
Bst2UI	CCWGG	3 cut(s)	83, 323, 380
Bst4CI	ACNGT	2 cut(s)	193, 203
BstBAI	YACGTR	2 cut(s)	173, 411
BstC8I	GCNNGC	1 cut(s)	357
BstEII	GGTNACC	1 cut(s)	187
BstFNI	CGCG	1 cut(s)	71
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 71
BstKTI	GATC	4 cut(s)	19, 126, 216, 351
BstMAI	GTCTC	2 cut(s)	113, 140
BstMBI	GATC	4 cut(s)	16, 123, 213, 348
BstMCI	CGRYCG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	3 cut(s)	318, 384, 466
BstNI	CCWGG	3 cut(s)	83, 323, 380
BstPAI	GACNNNNGTC	1 cut(s)	476
BstPI	GGTNACC	1 cut(s)	187
BstSCI	CCNGG	3 cut(s)	81, 321, 378
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	3 cut(s)	318, 321, 413
BstV2I	GAAGAC	2 cut(s)	31, 138
BstX2I	RGATCY	2 cut(s)	16, 213
BstYI	RGATCY	2 cut(s)	16, 213
BsuRI	GGCC	3 cut(s)	209, 254, 378
BtrI	CACGTC	1 cut(s)	331
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	177
BveI	ACCTGC	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	357
CfoI	GCGC	2 cut(s)	7, 71
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	3 cut(s)	98, 253, 444
Csp6I	GTAC	1 cut(s)	78
CspAI	ACCGGT	1 cut(s)	53
CviJI	RGCY	9 cut(s)	86, 209, 254, 265, 321, 344, 378, 426, 469
CviKI_1	RGCY	9 cut(s)	86, 209, 254, 265, 321, 344, 378, 426, 469
CviQI	GTAC	1 cut(s)	78
DpnI	GATC	4 cut(s)	18, 125, 215, 350
DpnII	GATC	4 cut(s)	16, 123, 213, 348
EciI	GGCGGA	1 cut(s)	341
Eco130I	CCWWGG	2 cut(s)	153, 183
Eco147I	AGGCCT	1 cut(s)	378
Eco31I	GGTCTC	1 cut(s)	113
Eco47I	GGWCC	2 cut(s)	98, 444
Eco72I	CACGTG	1 cut(s)	411
Eco88I	CYCGRG	1 cut(s)	266
Eco91I	GGTNACC	1 cut(s)	187
EcoO109I	RGGNCCY	2 cut(s)	253, 444
EcoO65I	GGTNACC	1 cut(s)	187
EcoRII	CCWGG	3 cut(s)	81, 321, 378
EcoT14I	CCWWGG	2 cut(s)	153, 183
ErhI	CCWWGG	2 cut(s)	153, 183
FaiI	YATR	1 cut(s)	368
FaqI	GGGAC	1 cut(s)	430
FauI	CCCGC	1 cut(s)	387
FblI	GTMKAC	2 cut(s)	169, 480
Fnu4HI	GCNGC	5 cut(s)	72, 237, 307, 310, 427
Fsp4HI	GCNGC	5 cut(s)	72, 237, 307, 310, 427
GlaI	GCGC	2 cut(s)	6, 70
GluI	GCNGC	5 cut(s)	72, 237, 307, 310, 427
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	3 cut(s)	209, 254, 378
HapII	CCGG	1 cut(s)	54
HhaI	GCGC	2 cut(s)	7, 71
Hin6I	GCGC	2 cut(s)	5, 69
HinP1I	GCGC	2 cut(s)	5, 69
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	4 cut(s)	43, 71, 181, 445
Hpy166II	GTNNAC	2 cut(s)	170, 481
Hpy188III	TCNNGA	3 cut(s)	139, 289, 452
Hpy8I	GTNNAC	2 cut(s)	170, 481
Hpy99I	CGWCG	1 cut(s)	425
HpyAV	CCTTC	6 cut(s)	136, 157, 277, 377, 435, 457
HpyCH4III	ACNGT	2 cut(s)	193, 203
HpyCH4IV	ACGT	4 cut(s)	172, 294, 330, 410
HpyCH4V	TGCA	3 cut(s)	196, 355, 460
HpyF10VI	GCNNNNNNNGC	3 cut(s)	318, 384, 466
HpySE526I	ACGT	4 cut(s)	172, 294, 330, 410
HspAI	GCGC	2 cut(s)	5, 69
Kzo9I	GATC	4 cut(s)	16, 123, 213, 348
LmnI	GCTCC	2 cut(s)	91, 466
Lsp1109I	GCAGC	3 cut(s)	318, 321, 413
LweI	GCATC	2 cut(s)	321, 381
MaeII	ACGT	4 cut(s)	172, 294, 330, 410
MaeIII	GTNAC	2 cut(s)	175, 187
MalI	GATC	4 cut(s)	18, 125, 215, 350
MboI	GATC	4 cut(s)	16, 123, 213, 348
MboII	GAAGA	4 cut(s)	31, 133, 143, 349
MflI	RGATCY	2 cut(s)	16, 213
MhlI	GDGCHC	1 cut(s)	273
MnlI	CCTC	8 cut(s)	31, 111, 199, 238, 266, 354, 391, 459
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	3 cut(s)	83, 323, 380
MvaI	CCWGG	3 cut(s)	83, 323, 380
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	3 cut(s)	318, 384, 466
NdeII	GATC	4 cut(s)	16, 123, 213, 348
NlaIV	GGNNCC	4 cut(s)	18, 87, 225, 446
NmeAIII	GCCGAG	1 cut(s)	384
NmuCI	GTSAC	2 cut(s)	175, 187
PceI	AGGCCT	1 cut(s)	378
PflMI	CCANNNNNTGG	1 cut(s)	159
PinAI	ACCGGT	1 cut(s)	53
PkrI	GCNGC	5 cut(s)	73, 238, 308, 311, 428
PmaCI	CACGTG	1 cut(s)	411
PmlI	CACGTG	1 cut(s)	411
Ppu21I	YACGTR	2 cut(s)	173, 411
PpuMI	RGGWCCY	1 cut(s)	444
PshAI	GACNNNNGTC	1 cut(s)	476
Psp5II	RGGWCCY	1 cut(s)	444
Psp6I	CCWGG	3 cut(s)	81, 321, 378
PspCI	CACGTG	1 cut(s)	411
PspEI	GGTNACC	1 cut(s)	187
PspGI	CCWGG	3 cut(s)	81, 321, 378
PspN4I	GGNNCC	4 cut(s)	18, 87, 225, 446
PspPI	GGNCC	3 cut(s)	98, 253, 444
PspPPI	RGGWCCY	1 cut(s)	444
PsuI	RGATCY	2 cut(s)	16, 213
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
SatI	GCNGC	5 cut(s)	72, 237, 307, 310, 427
Sau3AI	GATC	4 cut(s)	16, 123, 213, 348
Sau96I	GGNCC	3 cut(s)	98, 253, 444
ScrFI	CCNGG	3 cut(s)	83, 323, 380
SduI	GDGCHC	1 cut(s)	273
SfaNI	GCATC	2 cut(s)	321, 381
SgrAI	CRCCGGYG	1 cut(s)	53
SinI	GGWCC	2 cut(s)	98, 444
SseBI	AGGCCT	1 cut(s)	378
SsiI	CCGC	8 cut(s)	46, 71, 234, 237, 277, 326, 394, 474
StuI	AGGCCT	1 cut(s)	378
StyD4I	CCNGG	3 cut(s)	81, 321, 378
StyI	CCWWGG	2 cut(s)	153, 183
TaaI	ACNGT	2 cut(s)	193, 203
TaiI	ACGT	4 cut(s)	175, 297, 333, 413
TaqII	GACCGA	1 cut(s)	95
TauI	GCSGC	2 cut(s)	74, 239
TscAI	CASTG	1 cut(s)	184
TseFI	GTSAC	2 cut(s)	175, 187
TseI	GCWGC	3 cut(s)	306, 309, 426
Tsp45I	GTSAC	2 cut(s)	175, 187
TspGWI	ACGGA	1 cut(s)	409
TspRI	CASTG	1 cut(s)	184
Van91I	CCANNNNNTGG	1 cut(s)	159
VpaK11BI	GGWCC	2 cut(s)	98, 444
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XmiI	GTMKAC	2 cut(s)	169, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.